RNA–Protein interactions for RNA: ENST00000566547.1

GGA2-206, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 2, humanhuman

TSL 2

Gene GGA2, Length 603 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA2-206ENST00000566547 NISCHQ9Y2I1 1504 aa55.73■■■■■ 6.51
GGA2-206ENST00000566547 CCDC180Q9P1Z9 1646 aa49.91■■■■■ 5.58
GGA2-206ENST00000566547 ABCC9O60706 1549 aa49.9■■■■■ 5.58
GGA2-206ENST00000566547 RB1CC1Q8TDY2 1594 aa47.45■■■■■ 5.19
GGA2-206ENST00000566547 NACADO15069 1562 aa47.13■■■■■ 5.14
GGA2-206ENST00000566547 DCAF8L2P0C7V8 631 aa47.09■■■■■ 5.13
GGA2-206ENST00000566547 DNAJC5BQ9UF47 199 aa46.7■■■■■ 5.07
GGA2-206ENST00000566547 PABPN1Q86U42 306 aaKnown RBP eCLIP46.51■■■■■ 5.04
GGA2-206ENST00000566547 UNC13AQ9UPW8 1703 aa46.51■■■■■ 5.04
GGA2-206ENST00000566547 MYO15BQ96JP2 1530 aa46.46■■■■■ 5.03
GGA2-206ENST00000566547 ZCCHC6Q5VYS8 1495 aaKnown RBP46.22■■■■■ 4.99
GGA2-206ENST00000566547 BICRAQ9NZM4 1560 aa46.13■■■■■ 4.98
GGA2-206ENST00000566547 DCAF1Q9Y4B6 1507 aa45.95■■■■■ 4.95
GGA2-206ENST00000566547 SCRIBQ14160 1630 aa45.63■■■■■ 4.89
GGA2-206ENST00000566547 SHROOM4Q9ULL8 1493 aa45.34■■■■■ 4.85
GGA2-206ENST00000566547 CC2D2AQ9P2K1 1620 aa45.04■■■■■ 4.8
GGA2-206ENST00000566547 EIF4G1Q04637 1599 aaKnown RBP44.97■■■■■ 4.79
GGA2-206ENST00000566547 CECR2Q9BXF3 1484 aa44.87■■■■■ 4.77
GGA2-206ENST00000566547 NCAPD3P42695 1498 aa43.51■■■■■ 4.56
GGA2-206ENST00000566547 SMARCA4P51532 1647 aa43.48■■■■■ 4.55
GGA2-206ENST00000566547 ATAD2BQ9ULI0 1458 aa43.45■■■■■ 4.55
GGA2-206ENST00000566547 SMARCA2P51531 1590 aa43.29■■■■■ 4.52
GGA2-206ENST00000566547 BAZ1AQ9NRL2 1556 aaPredicted RBP43.23■■■■■ 4.51
GGA2-206ENST00000566547 HMGXB3Q12766 1538 aa43.21■■■■■ 4.51
GGA2-206ENST00000566547 BAZ1BQ9UIG0 1483 aaKnown RBP43.05■■■■■ 4.48
GGA2-206ENST00000566547 ERCC6Q03468 1493 aa43.02■■■■■ 4.48
GGA2-206ENST00000566547 MROH2BQ7Z745 1585 aa43■■■■■ 4.47
GGA2-206ENST00000566547 PEG3Q9GZU2 1588 aa42.97■■■■■ 4.47
GGA2-206ENST00000566547 NESP48681 1621 aa42.93■■■■■ 4.46
GGA2-206ENST00000566547 CUX2O14529 1486 aa42.81■■■■■ 4.44
GGA2-206ENST00000566547 DNAJC5Q9H3Z4 198 aa42.67■■■■■ 4.42
GGA2-206ENST00000566547 WIZO95785 1651 aa42.53■■■■■ 4.4
GGA2-206ENST00000566547 LAMC3Q9Y6N6 1575 aa42.52■■■■■ 4.4
GGA2-206ENST00000566547 THOC2Q8NI27 1593 aaKnown RBP42.4■■■■■ 4.38
GGA2-206ENST00000566547 KIF21AQ7Z4S6 1674 aa42.38■■■■■ 4.37
GGA2-206ENST00000566547 PDS5BQ9NTI5 1447 aa42.26■■■■■ 4.36
GGA2-206ENST00000566547 CADPSQ9ULU8 1353 aa42.22■■■■■ 4.35
GGA2-206ENST00000566547 RSF1Q96T23 1441 aaPredicted RBP42.13■■■■■ 4.34
GGA2-206ENST00000566547 MRC2Q9UBG0 1479 aa41.93■■■■■ 4.3
GGA2-206ENST00000566547 TOP2AP11388 1531 aaKnown RBP41.92■■■■■ 4.3
GGA2-206ENST00000566547 WDR62O43379 1518 aa41.81■■■■■ 4.28
GGA2-206ENST00000566547 CEP164Q9UPV0 1460 aa41.79■■■■■ 4.28
GGA2-206ENST00000566547 FANCD2Q9BXW9 1451 aa41.78■■■■■ 4.28
GGA2-206ENST00000566547 CFTRP13569 1480 aa41.77■■■■■ 4.28
GGA2-206ENST00000566547 CCDC88BA6NC98 1476 aa41.48■■■■■ 4.23
GGA2-206ENST00000566547 URB2Q14146 1524 aaKnown RBP41.46■■■■■ 4.23
GGA2-206ENST00000566547 PRDM2Q13029 1718 aa41.41■■■■■ 4.22
GGA2-206ENST00000566547 TOPBP1Q92547 1522 aa41.01■■■■■ 4.16
GGA2-206ENST00000566547 TRIM41Q8WV44 630 aa40.98■■■■■ 4.15
GGA2-206ENST00000566547 ZNF608Q9ULD9 1512 aaPredicted RBP40.95■■■■■ 4.15
GGA2-206ENST00000566547 IFT140Q96RY7 1462 aa40.93■■■■■ 4.14
GGA2-206ENST00000566547 OSCARQ8IYS5 282 aa40.92■■■■■ 4.14
GGA2-206ENST00000566547 DNMBPQ6XZF7 1577 aa40.86■■■■■ 4.13
GGA2-206ENST00000566547 ABCC8Q09428 1581 aa40.82■■■■■ 4.13
GGA2-206ENST00000566547 EIF4G3O43432 1585 aaKnown RBP40.71■■■■■ 4.11
GGA2-206ENST00000566547 TARBP1Q13395 1621 aaKnown RBP40.65■■■■■ 4.1
GGA2-206ENST00000566547 POLA1P09884 1462 aaPredicted RBP40.61■■■■■ 4.09
GGA2-206ENST00000566547 AQRO60306 1485 aaKnown RBP eCLIP40.59■■■■■ 4.092e-11■■□□□ 12.6
GGA2-206ENST00000566547 RAD54L2Q9Y4B4 1467 aa40.51■■■■■ 4.08
GGA2-206ENST00000566547 SUPT5HO00267 1087 aaKnown RBP40.47■■■■■ 4.07
GGA2-206ENST00000566547 RIMBP3CA6NJZ7 1639 aa40.45■■■■■ 4.07
GGA2-206ENST00000566547 RIMBP3BA6NNM3 1639 aa40.45■■■■■ 4.07
GGA2-206ENST00000566547 RIMBP3Q9UFD9 1639 aa40.45■■■■■ 4.07
GGA2-206ENST00000566547 CHD1O14646 1710 aa40.42■■■■■ 4.06
GGA2-206ENST00000566547 SOGA1O94964 1423 aa40.41■■■■■ 4.06
GGA2-206ENST00000566547 CUX1P39880 1505 aa40.39■■■■■ 4.06
GGA2-206ENST00000566547 FGD5Q6ZNL6 1462 aa40.39■■■■■ 4.06
GGA2-206ENST00000566547 TDRD9Q8NDG6 1382 aaKnown RBP40.36■■■■■ 4.05
GGA2-206ENST00000566547 FBLN2P98095 1184 aa40.31■■■■■ 4.04
GGA2-206ENST00000566547 ARHGEF11O15085 1522 aa40.31■■■■■ 4.04
GGA2-206ENST00000566547 SNAPC4Q5SXM2 1469 aa40.16■■■■■ 4.02
GGA2-206ENST00000566547 WDR97A6NE52 1622 aa40.13■■■■■ 4.01
GGA2-206ENST00000566547 CYB5RLQ6IPT4 315 aa40.03■■■■■ 4
GGA2-206ENST00000566547 GRIN2BQ13224 1484 aa40.02■■■■■ 4
GGA2-206ENST00000566547 MAGI1Q96QZ7 1491 aaPredicted RBP39.98■■■■□ 3.99
GGA2-206ENST00000566547 CHMP7Q8WUX9 453 aaPredicted RBP39.97■■■■□ 3.99
GGA2-206ENST00000566547 PBRM1Q86U86 1689 aa39.95■■■■□ 3.99
GGA2-206ENST00000566547 ARAP1Q96P48 1450 aa39.94■■■■□ 3.98
GGA2-206ENST00000566547 GAPVD1Q14C86 1478 aa39.93■■■■□ 3.98
GGA2-206ENST00000566547 CLASP1Q7Z460 1538 aa39.89■■■■□ 3.98
GGA2-206ENST00000566547 ABCA10Q8WWZ4 1543 aa39.88■■■■□ 3.97
GGA2-206ENST00000566547 SYNJ2O15056 1496 aa39.87■■■■□ 3.97
GGA2-206ENST00000566547 SYNJ1O43426 1573 aa39.85■■■■□ 3.97
GGA2-206ENST00000566547 ABCA5Q8WWZ7 1642 aa39.85■■■■□ 3.97
GGA2-206ENST00000566547 BIVM-ERCC5R4GMW8 1640 aa39.76■■■■□ 3.95
GGA2-206ENST00000566547 WRNQ14191 1432 aaPredicted RBP eCLIP39.74■■■■□ 3.951e-7■■■■■ 66.8
GGA2-206ENST00000566547 TOP2BQ02880 1626 aa39.74■■■■□ 3.95
GGA2-206ENST00000566547 ADAMTS12P58397 1594 aa39.55■■■■□ 3.92
GGA2-206ENST00000566547 TRHP20396 242 aaPredicted RBP39.54■■■■□ 3.92
GGA2-206ENST00000566547 GRIN2AQ12879 1464 aa39.53■■■■□ 3.92
GGA2-206ENST00000566547 CEP170Q5SW79 1584 aa39.42■■■■□ 3.9
GGA2-206ENST00000566547 FHAD1B1AJZ9 1412 aa39.4■■■■□ 3.9
GGA2-206ENST00000566547 ERCC6L2Q5T890 1561 aa39.38■■■■□ 3.89
GGA2-206ENST00000566547 ERICH3Q5RHP9 1530 aa39.37■■■■□ 3.89
GGA2-206ENST00000566547 NUP160Q12769 1436 aa39.36■■■■□ 3.89
GGA2-206ENST00000566547 SHROOM2Q13796 1616 aa39.19■■■■□ 3.86
GGA2-206ENST00000566547 PRG4Q92954 1404 aaPredicted RBP39.02■■■■□ 3.84
GGA2-206ENST00000566547 RUSC2Q8N2Y8 1516 aa38.99■■■■□ 3.83
GGA2-206ENST00000566547 JPH4Q96JJ6 628 aa38.98■■■■□ 3.83
GGA2-206ENST00000566547 IGF1RP08069 1367 aa38.95■■■■□ 3.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms