RNA–Protein interactions for RNA: ENST00000568799.1

GGA2-212, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 2, humanhuman

TSL 5

Gene GGA2, Length 1,403 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA2-212ENST00000568799 NISCHQ9Y2I1 1504 aa51.74■■■■■ 5.87
GGA2-212ENST00000568799 CCDC180Q9P1Z9 1646 aa46.17■■■■■ 4.98
GGA2-212ENST00000568799 ABCC9O60706 1549 aa45.66■■■■■ 4.9
GGA2-212ENST00000568799 RB1CC1Q8TDY2 1594 aa43.73■■■■■ 4.59
GGA2-212ENST00000568799 DCAF8L2P0C7V8 631 aa43.58■■■■■ 4.57
GGA2-212ENST00000568799 NACADO15069 1562 aa43.56■■■■■ 4.56
GGA2-212ENST00000568799 MYO15BQ96JP2 1530 aa43.13■■■■■ 4.5
GGA2-212ENST00000568799 ZCCHC6Q5VYS8 1495 aaKnown RBP43■■■■■ 4.47
GGA2-212ENST00000568799 DCAF1Q9Y4B6 1507 aa42.78■■■■■ 4.44
GGA2-212ENST00000568799 PABPN1Q86U42 306 aaKnown RBP eCLIP42.63■■■■■ 4.41
GGA2-212ENST00000568799 UNC13AQ9UPW8 1703 aa42.59■■■■■ 4.41
GGA2-212ENST00000568799 BICRAQ9NZM4 1560 aa42.31■■■■■ 4.36
GGA2-212ENST00000568799 DNAJC5BQ9UF47 199 aa42.23■■■■■ 4.35
GGA2-212ENST00000568799 SCRIBQ14160 1630 aa42.13■■■■■ 4.33
GGA2-212ENST00000568799 SHROOM4Q9ULL8 1493 aa41.95■■■■■ 4.31
GGA2-212ENST00000568799 EIF4G1Q04637 1599 aaKnown RBP41.31■■■■■ 4.2
GGA2-212ENST00000568799 CC2D2AQ9P2K1 1620 aa41.24■■■■■ 4.19
GGA2-212ENST00000568799 CECR2Q9BXF3 1484 aa41.1■■■■■ 4.17
GGA2-212ENST00000568799 SMARCA4P51532 1647 aa40.23■■■■■ 4.03
GGA2-212ENST00000568799 NCAPD3P42695 1498 aa40.19■■■■■ 4.03
GGA2-212ENST00000568799 BAZ1AQ9NRL2 1556 aaPredicted RBP40.17■■■■■ 4.02
GGA2-212ENST00000568799 ATAD2BQ9ULI0 1458 aa40.15■■■■■ 4.02
GGA2-212ENST00000568799 SMARCA2P51531 1590 aa40.11■■■■■ 4.01
GGA2-212ENST00000568799 HMGXB3Q12766 1538 aa39.95■■■■□ 3.99
GGA2-212ENST00000568799 BAZ1BQ9UIG0 1483 aaKnown RBP39.85■■■■□ 3.97
GGA2-212ENST00000568799 MROH2BQ7Z745 1585 aa39.84■■■■□ 3.97
GGA2-212ENST00000568799 PEG3Q9GZU2 1588 aa39.82■■■■□ 3.97
GGA2-212ENST00000568799 ERCC6Q03468 1493 aa39.48■■■■□ 3.91
GGA2-212ENST00000568799 WIZO95785 1651 aa39.39■■■■□ 3.9
GGA2-212ENST00000568799 NESP48681 1621 aa39.34■■■■□ 3.89
GGA2-212ENST00000568799 RSF1Q96T23 1441 aaPredicted RBP39.26■■■■□ 3.88
GGA2-212ENST00000568799 LAMC3Q9Y6N6 1575 aa39.21■■■■□ 3.87
GGA2-212ENST00000568799 CUX2O14529 1486 aa39.15■■■■□ 3.86
GGA2-212ENST00000568799 CADPSQ9ULU8 1353 aa39.04■■■■□ 3.84
GGA2-212ENST00000568799 PDS5BQ9NTI5 1447 aa39.04■■■■□ 3.84
GGA2-212ENST00000568799 TOP2AP11388 1531 aaKnown RBP38.99■■■■□ 3.83
GGA2-212ENST00000568799 KIF21AQ7Z4S6 1674 aa38.83■■■■□ 3.81
GGA2-212ENST00000568799 THOC2Q8NI27 1593 aaKnown RBP38.81■■■■□ 3.8
GGA2-212ENST00000568799 CFTRP13569 1480 aa38.68■■■■□ 3.78
GGA2-212ENST00000568799 MRC2Q9UBG0 1479 aa38.61■■■■□ 3.77
GGA2-212ENST00000568799 CEP164Q9UPV0 1460 aa38.59■■■■□ 3.77
GGA2-212ENST00000568799 FANCD2Q9BXW9 1451 aa38.59■■■■□ 3.77
GGA2-212ENST00000568799 CCDC88BA6NC98 1476 aa38.52■■■■□ 3.76
GGA2-212ENST00000568799 WDR62O43379 1518 aa38.47■■■■□ 3.75
GGA2-212ENST00000568799 DNAJC5Q9H3Z4 198 aa38.46■■■■□ 3.75
GGA2-212ENST00000568799 PRDM2Q13029 1718 aa38.28■■■■□ 3.72
GGA2-212ENST00000568799 URB2Q14146 1524 aaKnown RBP38.17■■■■□ 3.7
GGA2-212ENST00000568799 SUPT5HO00267 1087 aaKnown RBP38.05■■■■□ 3.68
GGA2-212ENST00000568799 ABCC8Q09428 1581 aa37.92■■■■□ 3.66
GGA2-212ENST00000568799 TOPBP1Q92547 1522 aa37.89■■■■□ 3.66
GGA2-212ENST00000568799 DNMBPQ6XZF7 1577 aa37.81■■■■□ 3.64
GGA2-212ENST00000568799 IFT140Q96RY7 1462 aa37.8■■■■□ 3.64
GGA2-212ENST00000568799 ZNF608Q9ULD9 1512 aaPredicted RBP37.61■■■■□ 3.61
GGA2-212ENST00000568799 POLA1P09884 1462 aaPredicted RBP37.54■■■■□ 3.6
GGA2-212ENST00000568799 OSCARQ8IYS5 282 aa37.51■■■■□ 3.59
GGA2-212ENST00000568799 TARBP1Q13395 1621 aaKnown RBP37.46■■■■□ 3.59
GGA2-212ENST00000568799 EIF4G3O43432 1585 aaKnown RBP37.45■■■■□ 3.59
GGA2-212ENST00000568799 SOGA1O94964 1423 aa37.43■■■■□ 3.58
GGA2-212ENST00000568799 CUX1P39880 1505 aa37.41■■■■□ 3.58
GGA2-212ENST00000568799 FGD5Q6ZNL6 1462 aa37.39■■■■□ 3.58
GGA2-212ENST00000568799 RAD54L2Q9Y4B4 1467 aa37.39■■■■□ 3.58
GGA2-212ENST00000568799 AQRO60306 1485 aaKnown RBP eCLIP37.38■■■■□ 3.573e-8■■■■□ 24
GGA2-212ENST00000568799 TDRD9Q8NDG6 1382 aaKnown RBP37.26■■■■□ 3.56
GGA2-212ENST00000568799 WDR97A6NE52 1622 aa37.2■■■■□ 3.55
GGA2-212ENST00000568799 FBLN2P98095 1184 aa37.14■■■■□ 3.54
GGA2-212ENST00000568799 WRNQ14191 1432 aaPredicted RBP eCLIP37.09■■■■□ 3.531e-7■■■■■ 66.8
GGA2-212ENST00000568799 TRIM41Q8WV44 630 aa37.09■■■■□ 3.53
GGA2-212ENST00000568799 GRIN2BQ13224 1484 aa37.04■■■■□ 3.52
GGA2-212ENST00000568799 SNAPC4Q5SXM2 1469 aa37.03■■■■□ 3.52
GGA2-212ENST00000568799 CHD1O14646 1710 aa37.02■■■■□ 3.52
GGA2-212ENST00000568799 ABCA10Q8WWZ4 1543 aa37.01■■■■□ 3.51
GGA2-212ENST00000568799 TOP2BQ02880 1626 aa36.99■■■■□ 3.51
GGA2-212ENST00000568799 GAPVD1Q14C86 1478 aa36.98■■■■□ 3.51
GGA2-212ENST00000568799 MAGI1Q96QZ7 1491 aaPredicted RBP36.98■■■■□ 3.51
GGA2-212ENST00000568799 BIVM-ERCC5R4GMW8 1640 aa36.96■■■■□ 3.51
GGA2-212ENST00000568799 CHMP7Q8WUX9 453 aaPredicted RBP36.95■■■■□ 3.51
GGA2-212ENST00000568799 SYNJ1O43426 1573 aa36.94■■■■□ 3.5
GGA2-212ENST00000568799 ABCA5Q8WWZ7 1642 aa36.86■■■■□ 3.49
GGA2-212ENST00000568799 PBRM1Q86U86 1689 aa36.85■■■■□ 3.49
GGA2-212ENST00000568799 SYNJ2O15056 1496 aa36.85■■■■□ 3.49
GGA2-212ENST00000568799 RIMBP3CA6NJZ7 1639 aa36.84■■■■□ 3.49
GGA2-212ENST00000568799 RIMBP3BA6NNM3 1639 aa36.84■■■■□ 3.49
GGA2-212ENST00000568799 RIMBP3Q9UFD9 1639 aa36.84■■■■□ 3.49
GGA2-212ENST00000568799 ARHGEF11O15085 1522 aa36.83■■■■□ 3.49
GGA2-212ENST00000568799 CLASP1Q7Z460 1538 aa36.63■■■■□ 3.45
GGA2-212ENST00000568799 CYB5RLQ6IPT4 315 aa36.59■■■■□ 3.45
GGA2-212ENST00000568799 ERICH3Q5RHP9 1530 aa36.57■■■■□ 3.44
GGA2-212ENST00000568799 ADAMTS12P58397 1594 aa36.56■■■■□ 3.44
GGA2-212ENST00000568799 FHAD1B1AJZ9 1412 aa36.55■■■■□ 3.44
GGA2-212ENST00000568799 GRIN2AQ12879 1464 aa36.54■■■■□ 3.44
GGA2-212ENST00000568799 ARAP1Q96P48 1450 aa36.47■■■■□ 3.43
GGA2-212ENST00000568799 KIF27Q86VH2 1401 aa36.38■■■■□ 3.41
GGA2-212ENST00000568799 NUP160Q12769 1436 aa36.37■■■■□ 3.41
GGA2-212ENST00000568799 CEP170Q5SW79 1584 aa36.33■■■■□ 3.41
GGA2-212ENST00000568799 IGF1RP08069 1367 aa36.22■■■■□ 3.39
GGA2-212ENST00000568799 CUL7Q14999 1698 aa36.14■■■■□ 3.38
GGA2-212ENST00000568799 SHROOM2Q13796 1616 aa36.1■■■■□ 3.37
GGA2-212ENST00000568799 ERCC6L2Q5T890 1561 aa36.06■■■■□ 3.36
GGA2-212ENST00000568799 TRHP20396 242 aaPredicted RBP36.06■■■■□ 3.36
GGA2-212ENST00000568799 JPH4Q96JJ6 628 aa36.06■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms