Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.012e-6■■■■□ 19.7
SMNDC1O75940 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.972e-6■■■■□ 19.7
SMNDC1O75940 NEU4-217ENST00000618597 3013 ntTSL 219.19■□□□□ 0.662e-6■■■■□ 19.7
SMNDC1O75940 NEU4-214ENST00000476542 536 ntTSL 219.01■□□□□ 0.632e-6■■■■□ 19.7
SMNDC1O75940 NEU4-206ENST00000415936 860 ntTSL 316.14■□□□□ 0.172e-6■■■■□ 19.7
SMNDC1O75940 NEU4-208ENST00000423583 753 ntTSL 515.77■□□□□ 0.122e-6■■■■□ 19.7
SMNDC1O75940 MICALL2-208ENST00000472100 5248 ntTSL 218.35■□□□□ 0.539e-7■■■■□ 19.7
SMNDC1O75940 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.429e-7■■■■□ 19.7
SMNDC1O75940 SEPT9-219ENST00000588575 559 ntTSL 418.31■□□□□ 0.522e-6■■■■□ 19.7
SMNDC1O75940 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.132e-6■■■■□ 19.7
SMNDC1O75940 SEPT9-201ENST00000329047 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.372e-6■■■■□ 19.7
SMNDC1O75940 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.951e-6■■■■□ 19.6
SMNDC1O75940 CENPX-203ENST00000577379 861 ntTSL 520.37■□□□□ 0.851e-6■■■■□ 19.6
SMNDC1O75940 CENPX-211ENST00000585091 739 ntTSL 317.95■□□□□ 0.461e-6■■■■□ 19.6
SMNDC1O75940 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.86■□□□□ 0.291e-6■■■■□ 19.6
SMNDC1O75940 CENPX-209ENST00000584514 882 ntTSL 216.85■□□□□ 0.291e-6■■■■□ 19.6
SMNDC1O75940 CENPX-205ENST00000580090 752 ntTSL 216.73■□□□□ 0.271e-6■■■■□ 19.6
SMNDC1O75940 CENPX-207ENST00000583767 894 ntTSL 316.62■□□□□ 0.251e-6■■■■□ 19.6
SMNDC1O75940 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.33■□□□□ 0.21e-6■■■■□ 19.6
SMNDC1O75940 CENPX-204ENST00000579520 702 ntTSL 315.3■□□□□ 0.041e-6■■■■□ 19.6
SMNDC1O75940 CENPX-210ENST00000584600 730 ntTSL 214.55□□□□□ -0.081e-6■■■■□ 19.6
SMNDC1O75940 CENPX-208ENST00000584347 799 ntTSL 2 BASIC12.9□□□□□ -0.341e-6■■■■□ 19.6
SMNDC1O75940 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.63■■□□□ 1.859e-7■■■■□ 19.6
SMNDC1O75940 CTBP1-214ENST00000514495 564 ntTSL 224.94■■□□□ 1.589e-7■■■■□ 19.6
SMNDC1O75940 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.379e-7■■■■□ 19.6
SMNDC1O75940 CTBP1-217ENST00000515399 985 ntTSL 317.61■□□□□ 0.419e-7■■■■□ 19.6
SMNDC1O75940 CTBP1-208ENST00000506180 843 ntTSL 516.53■□□□□ 0.249e-7■■■■□ 19.6
SMNDC1O75940 CTBP1-213ENST00000514210 856 ntTSL 213.37□□□□□ -0.279e-7■■■■□ 19.6
SMNDC1O75940 CTBP1-212ENST00000513420 704 ntTSL 313.32□□□□□ -0.289e-7■■■■□ 19.6
SMNDC1O75940 EEF1D-237ENST00000531281 813 ntTSL 215.4■□□□□ 0.064e-7■■■■□ 19.6
SMNDC1O75940 EEF1D-239ENST00000531670 926 ntTSL 313.94□□□□□ -0.184e-7■■■■□ 19.6
SMNDC1O75940 ACTB-213ENST00000493945 1236 ntTSL 513.24□□□□□ -0.296e-14■■■■□ 19.6
SMNDC1O75940 SNHG16-201ENST00000448136 3607 ntTSL 1 (best) BASIC10.97□□□□□ -0.653e-16■■■■□ 19.6
SMNDC1O75940 SNHG16-208ENST00000591956 556 ntTSL 210.1□□□□□ -0.793e-16■■■■□ 19.6
SMNDC1O75940 SNHG16-204ENST00000586942 568 ntTSL 4 BASIC8.91□□□□□ -0.983e-16■■■■□ 19.6
SMNDC1O75940 SNHG16-207ENST00000590435 1947 ntTSL 5 BASIC8.61□□□□□ -1.033e-16■■■■□ 19.6
SMNDC1O75940 SNHG16-202ENST00000493536 2424 ntTSL 1 (best)8.14□□□□□ -1.113e-16■■■■□ 19.6
SMNDC1O75940 SNHG16-206ENST00000587838 884 ntTSL 34.74□□□□□ -1.653e-16■■■■□ 19.6
SMNDC1O75940 TMEM74B-203ENST00000481747 582 ntTSL 225.2■■□□□ 1.622e-6■■■■□ 19.6
SMNDC1O75940 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.859e-7■■■■□ 19.6
SMNDC1O75940 BRD9-212ENST00000495265 2843 ntTSL 219.09■□□□□ 0.659e-7■■■■□ 19.6
SMNDC1O75940 BRD9-208ENST00000489816 3170 ntTSL 1 (best)16.01■□□□□ 0.159e-7■■■■□ 19.6
SMNDC1O75940 BRD9-201ENST00000466684 1417 ntTSL 214.73□□□□□ -0.059e-7■■■■□ 19.6
SMNDC1O75940 BRD9-213ENST00000495794 4865 ntTSL 214.13□□□□□ -0.159e-7■■■■□ 19.6
SMNDC1O75940 BRD9-204ENST00000483173 2120 ntTSL 2 BASIC12.88□□□□□ -0.359e-7■■■■□ 19.6
SMNDC1O75940 BRD9-209ENST00000490814 3477 ntTSL 1 (best)11.08□□□□□ -0.649e-7■■■■□ 19.6
SMNDC1O75940 BRD9-211ENST00000494422 449 ntTSL 35.65□□□□□ -1.59e-7■■■■□ 19.6
SMNDC1O75940 CPSF1-204ENST00000529288 588 ntTSL 211.79□□□□□ -0.525e-8■■■■□ 19.5
SMNDC1O75940 EIF4A2-217ENST00000475409 802 ntTSL 26.85□□□□□ -1.311e-323■■■■□ 19.5
SMNDC1O75940 CNOT6-205ENST00000507016 382 ntTSL 321.12■□□□□ 0.978e-8■■■■□ 19.5
SMNDC1O75940 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.748e-8■■■■□ 19.5
SMNDC1O75940 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.488e-8■■■■□ 19.5
SMNDC1O75940 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.38e-8■■■■□ 19.5
SMNDC1O75940 CNOT6-203ENST00000502447 552 ntTSL 315.92■□□□□ 0.148e-8■■■■□ 19.5
SMNDC1O75940 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.16■□□□□ 0.984e-8■■■■□ 19.5
SMNDC1O75940 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.964e-8■■■■□ 19.5
SMNDC1O75940 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.584e-8■■■■□ 19.5
SMNDC1O75940 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.334e-8■■■■□ 19.5
SMNDC1O75940 TRMT2A-218ENST00000492988 854 ntTSL 515.05■□□□□ -04e-8■■■■□ 19.5
SMNDC1O75940 TRMT2A-220ENST00000494820 1098 ntTSL 514.01□□□□□ -0.174e-8■■■■□ 19.5
SMNDC1O75940 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.331e-6■■■■□ 19.5
SMNDC1O75940 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.321e-6■■■■□ 19.5
SMNDC1O75940 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.311e-6■■■■□ 19.5
SMNDC1O75940 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.261e-6■■■■□ 19.5
SMNDC1O75940 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.221e-6■■■■□ 19.5
SMNDC1O75940 TSC2-206ENST00000439117 5073 ntTSL 1 (best)15.41■□□□□ 0.061e-6■■■■□ 19.5
SMNDC1O75940 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.051e-6■■■■□ 19.5
SMNDC1O75940 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.98■■□□□ 1.436e-7■■■■□ 19.5
SMNDC1O75940 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.216e-7■■■■□ 19.5
SMNDC1O75940 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.44■■□□□ 1.186e-7■■■■□ 19.5
SMNDC1O75940 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.096e-7■■■■□ 19.5
SMNDC1O75940 DAZAP1-204ENST00000586579 619 ntTSL 320.35■□□□□ 0.855e-7■■■■□ 19.5
SMNDC1O75940 DAZAP1-210ENST00000592453 1021 ntTSL 513.75□□□□□ -0.215e-7■■■■□ 19.5
SMNDC1O75940 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.784e-9■■■■□ 19.5
SMNDC1O75940 LAMP1-203ENST00000472564 5242 ntTSL 217.6■□□□□ 0.414e-9■■■■□ 19.5
SMNDC1O75940 LAMP1-202ENST00000471046 424 ntTSL 311.58□□□□□ -0.564e-9■■■■□ 19.5
SMNDC1O75940 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.366e-7■■■■□ 19.5
SMNDC1O75940 CD81-214ENST00000530239 425 ntTSL 221.87■■□□□ 1.093e-6■■■■□ 19.4
SMNDC1O75940 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.56■□□□□ 0.243e-6■■■■□ 19.4
SMNDC1O75940 CD81-211ENST00000524805 982 ntTSL 516.07■□□□□ 0.163e-6■■■■□ 19.4
SMNDC1O75940 EZH2-205ENST00000476773 2572 ntTSL 2 BASIC10.3□□□□□ -0.768e-15■■■■□ 19.4
SMNDC1O75940 OAZ1-203ENST00000586054 2832 nt23.54■■□□□ 1.368e-8■■■■□ 19.3
SMNDC1O75940 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.099e-8■■■■□ 19.3
SMNDC1O75940 MBD6-204ENST00000547545 1884 ntTSL 1 (best)19.91■□□□□ 0.784e-10■■■■□ 19.3
SMNDC1O75940 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.53■□□□□ 0.724e-10■■■■□ 19.3
SMNDC1O75940 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.694e-10■■■■□ 19.3
SMNDC1O75940 MVD-214ENST00000567064 758 ntTSL 316.78■□□□□ 0.283e-7■■■■□ 19.3
SMNDC1O75940 MVD-217ENST00000569177 870 ntTSL 515.04■□□□□ -03e-7■■■■□ 19.3
SMNDC1O75940 MVD-215ENST00000568133 853 ntTSL 314.75□□□□□ -0.053e-7■■■■□ 19.3
SMNDC1O75940 MBD6-206ENST00000548550 563 ntTSL 413.54□□□□□ -0.244e-10■■■■□ 19.3
SMNDC1O75940 AHCYL1-201ENST00000359172 2503 ntTSL 1 (best) BASIC10.78□□□□□ -0.684e-10■■■■□ 19.3
SMNDC1O75940 AHCYL1-206ENST00000481423 732 ntTSL 38.14□□□□□ -1.114e-10■■■■□ 19.3
SMNDC1O75940 SNORD41-201ENST00000386967 70 ntBASIC2.31□□□□□ -2.042e-21■■■■□ 19.3
SMNDC1O75940 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.42e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-207ENST00000435198 1056 ntTSL 323.67■■□□□ 1.382e-6■■■■□ 19.3
SMNDC1O75940 TRAF7-206ENST00000569686 586 ntTSL 223.09■■□□□ 1.293e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-208ENST00000450390 2455 ntTSL 522.56■■□□□ 1.22e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.89■■□□□ 1.092e-6■■■■□ 19.3
SMNDC1O75940 UBE2J2-210ENST00000464036 1256 ntTSL 321.02■□□□□ 0.962e-6■■■■□ 19.3
SMNDC1O75940 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.83■□□□□ 0.933e-6■■■■□ 19.3
Retrieved 100 of 11,362 protein–RNA pairs in 104.7 ms