Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.65■■■□□ 2.18
SHKBP1Q8TBC3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHKBP1Q8TBC3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SHKBP1Q8TBC3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
SHKBP1Q8TBC3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHKBP1Q8TBC3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHKBP1Q8TBC3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.6■■■□□ 2.17
SHKBP1Q8TBC3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
SHKBP1Q8TBC3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.55■■■□□ 2.16
SHKBP1Q8TBC3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHKBP1Q8TBC3 AC044849.2-201ENST00000606596 710 ntBASIC28.54■■■□□ 2.16
SHKBP1Q8TBC3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHKBP1Q8TBC3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SHKBP1Q8TBC3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHKBP1Q8TBC3 ABHD17AP4-201ENST00000411545 909 ntBASIC28.5■■■□□ 2.15
SHKBP1Q8TBC3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SHKBP1Q8TBC3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.49■■■□□ 2.15
SHKBP1Q8TBC3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SHKBP1Q8TBC3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHKBP1Q8TBC3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.46■■■□□ 2.15
SHKBP1Q8TBC3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28.45■■■□□ 2.14
SHKBP1Q8TBC3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.45■■■□□ 2.14
SHKBP1Q8TBC3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHKBP1Q8TBC3 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHKBP1Q8TBC3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHKBP1Q8TBC3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.42■■■□□ 2.14
SHKBP1Q8TBC3 MIR7108-201ENST00000614319 87 ntBASIC28.41■■■□□ 2.14
SHKBP1Q8TBC3 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHKBP1Q8TBC3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHKBP1Q8TBC3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SHKBP1Q8TBC3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.38■■■□□ 2.13
SHKBP1Q8TBC3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.36■■■□□ 2.13
SHKBP1Q8TBC3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHKBP1Q8TBC3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.35■■■□□ 2.13
SHKBP1Q8TBC3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
SHKBP1Q8TBC3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.34■■■□□ 2.13
SHKBP1Q8TBC3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC28.33■■■□□ 2.12
SHKBP1Q8TBC3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.33■■■□□ 2.12
SHKBP1Q8TBC3 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHKBP1Q8TBC3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHKBP1Q8TBC3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHKBP1Q8TBC3 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.3■■■□□ 2.12
SHKBP1Q8TBC3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.29■■■□□ 2.12
SHKBP1Q8TBC3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
SHKBP1Q8TBC3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC28.26■■■□□ 2.11
SHKBP1Q8TBC3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.26■■■□□ 2.11
SHKBP1Q8TBC3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHKBP1Q8TBC3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHKBP1Q8TBC3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHKBP1Q8TBC3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC28.23■■■□□ 2.11
SHKBP1Q8TBC3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHKBP1Q8TBC3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.22■■■□□ 2.11
SHKBP1Q8TBC3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.22■■■□□ 2.11
SHKBP1Q8TBC3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
SHKBP1Q8TBC3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms