Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.65■■■□□ 2.18
SHKBP1Q8TBC3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHKBP1Q8TBC3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SHKBP1Q8TBC3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
SHKBP1Q8TBC3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHKBP1Q8TBC3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHKBP1Q8TBC3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHKBP1Q8TBC3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.6■■■□□ 2.17
SHKBP1Q8TBC3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
SHKBP1Q8TBC3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.56■■■□□ 2.16
SHKBP1Q8TBC3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.55■■■□□ 2.16
SHKBP1Q8TBC3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHKBP1Q8TBC3 AC044849.2-201ENST00000606596 710 ntBASIC28.54■■■□□ 2.16
SHKBP1Q8TBC3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHKBP1Q8TBC3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SHKBP1Q8TBC3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHKBP1Q8TBC3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHKBP1Q8TBC3 ABHD17AP4-201ENST00000411545 909 ntBASIC28.5■■■□□ 2.15
SHKBP1Q8TBC3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
SHKBP1Q8TBC3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.49■■■□□ 2.15
SHKBP1Q8TBC3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SHKBP1Q8TBC3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHKBP1Q8TBC3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.46■■■□□ 2.15
SHKBP1Q8TBC3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28.45■■■□□ 2.14
SHKBP1Q8TBC3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.45■■■□□ 2.14
SHKBP1Q8TBC3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHKBP1Q8TBC3 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHKBP1Q8TBC3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHKBP1Q8TBC3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHKBP1Q8TBC3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.42■■■□□ 2.14
SHKBP1Q8TBC3 MIR7108-201ENST00000614319 87 ntBASIC28.41■■■□□ 2.14
SHKBP1Q8TBC3 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHKBP1Q8TBC3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHKBP1Q8TBC3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SHKBP1Q8TBC3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.38■■■□□ 2.13
SHKBP1Q8TBC3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHKBP1Q8TBC3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.36■■■□□ 2.13
SHKBP1Q8TBC3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHKBP1Q8TBC3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.35■■■□□ 2.13
SHKBP1Q8TBC3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
SHKBP1Q8TBC3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.34■■■□□ 2.13
SHKBP1Q8TBC3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHKBP1Q8TBC3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC28.33■■■□□ 2.12
SHKBP1Q8TBC3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.33■■■□□ 2.12
SHKBP1Q8TBC3 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHKBP1Q8TBC3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHKBP1Q8TBC3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHKBP1Q8TBC3 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.3■■■□□ 2.12
SHKBP1Q8TBC3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.29■■■□□ 2.12
SHKBP1Q8TBC3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
SHKBP1Q8TBC3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.27■■■□□ 2.12
SHKBP1Q8TBC3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC28.26■■■□□ 2.11
SHKBP1Q8TBC3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.26■■■□□ 2.11
SHKBP1Q8TBC3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHKBP1Q8TBC3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHKBP1Q8TBC3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.24■■■□□ 2.11
SHKBP1Q8TBC3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHKBP1Q8TBC3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC28.23■■■□□ 2.11
SHKBP1Q8TBC3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHKBP1Q8TBC3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.22■■■□□ 2.11
SHKBP1Q8TBC3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.22■■■□□ 2.11
SHKBP1Q8TBC3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHKBP1Q8TBC3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
SHKBP1Q8TBC3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms