Protein–RNA interactions for Protein: Q6S5L8

SHC4, SHC-transforming protein 4, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC4Q6S5L8 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
SHC4Q6S5L8 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHC4Q6S5L8 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.84■■■□□ 2.53
SHC4Q6S5L8 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.84■■■□□ 2.53
SHC4Q6S5L8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHC4Q6S5L8 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.82■■■□□ 2.52
SHC4Q6S5L8 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
SHC4Q6S5L8 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHC4Q6S5L8 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.8■■■□□ 2.52
SHC4Q6S5L8 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.8■■■□□ 2.52
SHC4Q6S5L8 ABCB10P1-201ENST00000614297 2181 ntBASIC30.79■■■□□ 2.52
SHC4Q6S5L8 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SHC4Q6S5L8 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.76■■■□□ 2.52
SHC4Q6S5L8 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.76■■■□□ 2.51
SHC4Q6S5L8 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.76■■■□□ 2.51
SHC4Q6S5L8 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHC4Q6S5L8 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHC4Q6S5L8 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.71■■■□□ 2.51
SHC4Q6S5L8 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHC4Q6S5L8 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHC4Q6S5L8 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SHC4Q6S5L8 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.66■■■□□ 2.5
SHC4Q6S5L8 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.66■■■□□ 2.5
SHC4Q6S5L8 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
SHC4Q6S5L8 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.66■■■□□ 2.5
SHC4Q6S5L8 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
SHC4Q6S5L8 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SHC4Q6S5L8 AL161658.1-201ENST00000623641 1967 ntBASIC30.62■■■□□ 2.49
SHC4Q6S5L8 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
SHC4Q6S5L8 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHC4Q6S5L8 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHC4Q6S5L8 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHC4Q6S5L8 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.6■■■□□ 2.49
SHC4Q6S5L8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHC4Q6S5L8 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHC4Q6S5L8 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHC4Q6S5L8 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHC4Q6S5L8 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHC4Q6S5L8 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHC4Q6S5L8 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHC4Q6S5L8 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHC4Q6S5L8 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHC4Q6S5L8 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.54■■■□□ 2.48
SHC4Q6S5L8 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
SHC4Q6S5L8 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
SHC4Q6S5L8 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
SHC4Q6S5L8 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.52■■■□□ 2.48
SHC4Q6S5L8 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHC4Q6S5L8 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHC4Q6S5L8 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHC4Q6S5L8 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHC4Q6S5L8 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHC4Q6S5L8 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
SHC4Q6S5L8 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHC4Q6S5L8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SHC4Q6S5L8 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SHC4Q6S5L8 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHC4Q6S5L8 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHC4Q6S5L8 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHC4Q6S5L8 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
SHC4Q6S5L8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.47■■■□□ 2.47
SHC4Q6S5L8 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.47■■■□□ 2.47
SHC4Q6S5L8 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHC4Q6S5L8 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.46■■■□□ 2.47
SHC4Q6S5L8 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.47
SHC4Q6S5L8 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHC4Q6S5L8 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHC4Q6S5L8 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHC4Q6S5L8 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.43■■■□□ 2.46
SHC4Q6S5L8 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHC4Q6S5L8 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.42■■■□□ 2.46
SHC4Q6S5L8 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.42■■■□□ 2.46
SHC4Q6S5L8 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.42■■■□□ 2.46
SHC4Q6S5L8 ABCB10P3-201ENST00000561950 2166 ntBASIC30.42■■■□□ 2.46
SHC4Q6S5L8 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SHC4Q6S5L8 ST7-AS1-201ENST00000456775 1889 ntBASIC30.4■■■□□ 2.46
SHC4Q6S5L8 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.4■■■□□ 2.46
SHC4Q6S5L8 AL133380.1-201ENST00000506013 324 ntBASIC30.4■■■□□ 2.46
SHC4Q6S5L8 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
SHC4Q6S5L8 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHC4Q6S5L8 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SHC4Q6S5L8 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHC4Q6S5L8 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
SHC4Q6S5L8 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHC4Q6S5L8 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHC4Q6S5L8 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SHC4Q6S5L8 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHC4Q6S5L8 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
SHC4Q6S5L8 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHC4Q6S5L8 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHC4Q6S5L8 WASH5P-204ENST00000632292 975 ntBASIC30.35■■■□□ 2.45
SHC4Q6S5L8 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.35■■■□□ 2.45
SHC4Q6S5L8 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHC4Q6S5L8 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
SHC4Q6S5L8 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHC4Q6S5L8 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHC4Q6S5L8 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
SHC4Q6S5L8 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHC4Q6S5L8 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHC4Q6S5L8 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms