Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC144BQ3MJ40 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC144BQ3MJ40 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC144BQ3MJ40 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.55■■■□□ 2.64
CCDC144BQ3MJ40 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
CCDC144BQ3MJ40 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.54■■■□□ 2.64
CCDC144BQ3MJ40 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.54■■■□□ 2.64
CCDC144BQ3MJ40 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.54■■■□□ 2.64
CCDC144BQ3MJ40 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
CCDC144BQ3MJ40 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC144BQ3MJ40 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC144BQ3MJ40 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC144BQ3MJ40 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CCDC144BQ3MJ40 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC144BQ3MJ40 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC144BQ3MJ40 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC144BQ3MJ40 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
CCDC144BQ3MJ40 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC144BQ3MJ40 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.47■■■□□ 2.63
CCDC144BQ3MJ40 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC144BQ3MJ40 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.42■■■□□ 2.62
CCDC144BQ3MJ40 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC144BQ3MJ40 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC144BQ3MJ40 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC144BQ3MJ40 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.39■■■□□ 2.62
CCDC144BQ3MJ40 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC144BQ3MJ40 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC144BQ3MJ40 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
CCDC144BQ3MJ40 MIR3665-201ENST00000578708 105 ntBASIC31.38■■■□□ 2.61
CCDC144BQ3MJ40 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
CCDC144BQ3MJ40 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
CCDC144BQ3MJ40 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.37■■■□□ 2.61
CCDC144BQ3MJ40 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.37■■■□□ 2.61
CCDC144BQ3MJ40 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC144BQ3MJ40 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC144BQ3MJ40 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.34■■■□□ 2.61
CCDC144BQ3MJ40 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC144BQ3MJ40 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC144BQ3MJ40 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC144BQ3MJ40 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC144BQ3MJ40 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.32■■■□□ 2.6
CCDC144BQ3MJ40 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC144BQ3MJ40 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC144BQ3MJ40 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
CCDC144BQ3MJ40 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC144BQ3MJ40 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC144BQ3MJ40 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC144BQ3MJ40 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.29■■■□□ 2.6
CCDC144BQ3MJ40 DUX4L28-201ENST00000623687 678 ntBASIC31.28■■■□□ 2.6
CCDC144BQ3MJ40 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC144BQ3MJ40 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.27■■■□□ 2.6
CCDC144BQ3MJ40 AC087741.3-201ENST00000624270 1347 ntBASIC31.26■■■□□ 2.6
CCDC144BQ3MJ40 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC144BQ3MJ40 MIR762-201ENST00000390236 83 ntBASIC31.26■■■□□ 2.59
CCDC144BQ3MJ40 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.25■■■□□ 2.59
CCDC144BQ3MJ40 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC144BQ3MJ40 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
CCDC144BQ3MJ40 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.23■■■□□ 2.59
CCDC144BQ3MJ40 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
CCDC144BQ3MJ40 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.22■■■□□ 2.59
CCDC144BQ3MJ40 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
CCDC144BQ3MJ40 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
CCDC144BQ3MJ40 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC144BQ3MJ40 AC005559.1-201ENST00000589661 871 ntBASIC31.18■■■□□ 2.58
CCDC144BQ3MJ40 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.17■■■□□ 2.58
CCDC144BQ3MJ40 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.17■■■□□ 2.58
CCDC144BQ3MJ40 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC144BQ3MJ40 ABHD17AP4-201ENST00000411545 909 ntBASIC31.16■■■□□ 2.58
CCDC144BQ3MJ40 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC144BQ3MJ40 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC144BQ3MJ40 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC144BQ3MJ40 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC144BQ3MJ40 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.12■■■□□ 2.57
CCDC144BQ3MJ40 AC044849.2-201ENST00000606596 710 ntBASIC31.11■■■□□ 2.57
CCDC144BQ3MJ40 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC144BQ3MJ40 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC144BQ3MJ40 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
CCDC144BQ3MJ40 MIR7108-201ENST00000614319 87 ntBASIC31.1■■■□□ 2.57
CCDC144BQ3MJ40 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.1■■■□□ 2.57
CCDC144BQ3MJ40 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC144BQ3MJ40 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC144BQ3MJ40 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.09■■■□□ 2.57
CCDC144BQ3MJ40 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.08■■■□□ 2.57
CCDC144BQ3MJ40 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.07■■■□□ 2.56
CCDC144BQ3MJ40 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
CCDC144BQ3MJ40 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.06■■■□□ 2.56
CCDC144BQ3MJ40 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC144BQ3MJ40 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC144BQ3MJ40 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC144BQ3MJ40 WASH5P-204ENST00000632292 975 ntBASIC31.03■■■□□ 2.56
CCDC144BQ3MJ40 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC144BQ3MJ40 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
CCDC144BQ3MJ40 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC144BQ3MJ40 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC144BQ3MJ40 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC144BQ3MJ40 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC144BQ3MJ40 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC144BQ3MJ40 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC144BQ3MJ40 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC144BQ3MJ40 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms