Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC39.18■■■■□ 3.86
CCDC144BQ3MJ40 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC38.59■■■■□ 3.77
CCDC144BQ3MJ40 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
CCDC144BQ3MJ40 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC38.01■■■■□ 3.68
CCDC144BQ3MJ40 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
CCDC144BQ3MJ40 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC37.73■■■■□ 3.63
CCDC144BQ3MJ40 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
CCDC144BQ3MJ40 AL356512.1-201ENST00000607453 1739 ntBASIC37.49■■■■□ 3.59
CCDC144BQ3MJ40 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC37.29■■■■□ 3.56
CCDC144BQ3MJ40 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC37■■■■□ 3.51
CCDC144BQ3MJ40 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.9■■■■□ 3.5
CCDC144BQ3MJ40 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC36.8■■■■□ 3.48
CCDC144BQ3MJ40 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC36.74■■■■□ 3.47
CCDC144BQ3MJ40 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC36.68■■■■□ 3.46
CCDC144BQ3MJ40 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC36.58■■■■□ 3.45
CCDC144BQ3MJ40 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC36.54■■■■□ 3.44
CCDC144BQ3MJ40 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC36.54■■■■□ 3.44
CCDC144BQ3MJ40 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC36.47■■■■□ 3.43
CCDC144BQ3MJ40 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC36.35■■■■□ 3.41
CCDC144BQ3MJ40 HES6-203ENST00000409160 1600 ntTSL 2 BASIC36.23■■■■□ 3.39
CCDC144BQ3MJ40 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
CCDC144BQ3MJ40 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
CCDC144BQ3MJ40 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC36■■■■□ 3.35
CCDC144BQ3MJ40 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC35.97■■■■□ 3.35
CCDC144BQ3MJ40 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC35.91■■■■□ 3.34
CCDC144BQ3MJ40 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC35.88■■■■□ 3.33
CCDC144BQ3MJ40 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
CCDC144BQ3MJ40 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
CCDC144BQ3MJ40 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
CCDC144BQ3MJ40 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC35.78■■■■□ 3.32
CCDC144BQ3MJ40 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC35.73■■■■□ 3.31
CCDC144BQ3MJ40 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
CCDC144BQ3MJ40 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
CCDC144BQ3MJ40 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC35.63■■■■□ 3.29
CCDC144BQ3MJ40 INO80B-203ENST00000409917 796 ntTSL 2 BASIC35.57■■■■□ 3.28
CCDC144BQ3MJ40 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC35.42■■■■□ 3.26
CCDC144BQ3MJ40 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
CCDC144BQ3MJ40 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC35.23■■■■□ 3.23
CCDC144BQ3MJ40 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
CCDC144BQ3MJ40 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC35.17■■■■□ 3.22
CCDC144BQ3MJ40 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC35.13■■■■□ 3.21
CCDC144BQ3MJ40 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC35.08■■■■□ 3.21
CCDC144BQ3MJ40 AC006077.2-201ENST00000623591 457 ntBASIC35.07■■■■□ 3.2
CCDC144BQ3MJ40 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC35.06■■■■□ 3.2
CCDC144BQ3MJ40 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
CCDC144BQ3MJ40 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC35.04■■■■□ 3.2
CCDC144BQ3MJ40 ZNRF2P1-201ENST00000441407 443 ntBASIC35.03■■■■□ 3.2
CCDC144BQ3MJ40 AC015813.7-201ENST00000623294 581 ntBASIC35.03■■■■□ 3.2
CCDC144BQ3MJ40 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.93■■■■□ 3.18
CCDC144BQ3MJ40 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC34.93■■■■□ 3.18
CCDC144BQ3MJ40 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC34.9■■■■□ 3.18
CCDC144BQ3MJ40 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
CCDC144BQ3MJ40 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
CCDC144BQ3MJ40 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC34.68■■■■□ 3.14
CCDC144BQ3MJ40 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
CCDC144BQ3MJ40 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC34.62■■■■□ 3.13
CCDC144BQ3MJ40 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC34.61■■■■□ 3.13
CCDC144BQ3MJ40 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
CCDC144BQ3MJ40 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CCDC144BQ3MJ40 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
CCDC144BQ3MJ40 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC34.45■■■■□ 3.1
CCDC144BQ3MJ40 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC34.36■■■■□ 3.09
CCDC144BQ3MJ40 AP002365.1-201ENST00000603448 772 ntBASIC34.17■■■■□ 3.06
CCDC144BQ3MJ40 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
CCDC144BQ3MJ40 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC34.02■■■■□ 3.04
CCDC144BQ3MJ40 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
CCDC144BQ3MJ40 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC34.01■■■■□ 3.03
CCDC144BQ3MJ40 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC144BQ3MJ40 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
CCDC144BQ3MJ40 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC33.97■■■■□ 3.03
CCDC144BQ3MJ40 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC33.97■■■■□ 3.03
CCDC144BQ3MJ40 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.97■■■■□ 3.03
CCDC144BQ3MJ40 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC33.96■■■■□ 3.03
CCDC144BQ3MJ40 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
CCDC144BQ3MJ40 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC33.9■■■■□ 3.02
CCDC144BQ3MJ40 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC33.9■■■■□ 3.02
CCDC144BQ3MJ40 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC33.86■■■■□ 3.01
CCDC144BQ3MJ40 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
CCDC144BQ3MJ40 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
CCDC144BQ3MJ40 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC33.85■■■■□ 3.01
CCDC144BQ3MJ40 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC33.81■■■■□ 3
CCDC144BQ3MJ40 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.81■■■■□ 3
CCDC144BQ3MJ40 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC33.81■■■■□ 3
CCDC144BQ3MJ40 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.8■■■■□ 3
CCDC144BQ3MJ40 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
CCDC144BQ3MJ40 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC33.74■■■□□ 2.99
CCDC144BQ3MJ40 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
CCDC144BQ3MJ40 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
CCDC144BQ3MJ40 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC33.73■■■□□ 2.99
CCDC144BQ3MJ40 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.72■■■□□ 2.99
CCDC144BQ3MJ40 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
CCDC144BQ3MJ40 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
CCDC144BQ3MJ40 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC33.7■■■□□ 2.98
CCDC144BQ3MJ40 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.68■■■□□ 2.98
CCDC144BQ3MJ40 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.66■■■□□ 2.98
CCDC144BQ3MJ40 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC33.65■■■□□ 2.98
CCDC144BQ3MJ40 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC33.58■■■□□ 2.97
CCDC144BQ3MJ40 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC33.57■■■□□ 2.96
CCDC144BQ3MJ40 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.55■■■□□ 2.96
CCDC144BQ3MJ40 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC33.54■■■□□ 2.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms