Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MED6-208ENST00000555296 856 ntTSL 24.09□□□□□ -1.753e-6■■■■■ 44.6
SF3B1O75533 COMMD3-207ENST00000468469 526 ntTSL 33.95□□□□□ -1.783e-6■■■■■ 44.6
SF3B1O75533 AC012170.1-201ENST00000495139 359 ntBASIC3.95□□□□□ -1.783e-6■■■■■ 44.6
SF3B1O75533 SLC30A6-207ENST00000449777 2207 ntTSL 23.92□□□□□ -1.783e-6■■■■■ 44.6
SF3B1O75533 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.783e-6■■■■■ 44.6
SF3B1O75533 PRKCQ-AS1-216ENST00000623160 811 ntTSL 53.88□□□□□ -1.793e-6■■■■■ 44.6
SF3B1O75533 ATP2C1-213ENST00000508297 540 ntTSL 43.78□□□□□ -1.83e-6■■■■■ 44.6
SF3B1O75533 PDS5B-209ENST00000498550 4238 ntTSL 1 (best)3.7□□□□□ -1.823e-6■■■■■ 44.6
SF3B1O75533 PRKCQ-AS1-209ENST00000608526 666 ntTSL 53.65□□□□□ -1.833e-6■■■■■ 44.6
SF3B1O75533 SLC25A40-202ENST00000429674 1077 ntTSL 33.59□□□□□ -1.833e-6■■■■■ 44.6
SF3B1O75533 DDX5-234ENST00000585317 923 ntTSL 23.56□□□□□ -1.843e-6■■■■■ 44.6
SF3B1O75533 SLC25A40-204ENST00000446236 636 ntTSL 33.54□□□□□ -1.843e-6■■■■■ 44.6
SF3B1O75533 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.44□□□□□ -1.863e-6■■■■■ 44.6
SF3B1O75533 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.43□□□□□ -1.863e-6■■■■■ 44.6
SF3B1O75533 TOPBP1-208ENST00000511439 1142 ntTSL 53.36□□□□□ -1.873e-6■■■■■ 44.6
SF3B1O75533 PDS5B-204ENST00000466078 1889 ntTSL 23.28□□□□□ -1.883e-6■■■■■ 44.6
SF3B1O75533 TOPBP1-206ENST00000508524 618 ntTSL 53.02□□□□□ -1.933e-6■■■■■ 44.6
SF3B1O75533 SNRNP48-202ENST00000496946 2610 ntTSL 22.85□□□□□ -1.953e-6■■■■■ 44.6
SF3B1O75533 SPAG9-221ENST00000576492 554 ntTSL 52.8□□□□□ -1.963e-6■■■■■ 44.6
SF3B1O75533 COMMD3-213ENST00000483684 722 ntTSL 52.77□□□□□ -1.973e-6■■■■■ 44.6
SF3B1O75533 AASDHPPT-205ENST00000534152 5145 ntTSL 1 (best)2.68□□□□□ -1.983e-6■■■■■ 44.6
SF3B1O75533 GTF2F2-202ENST00000461904 542 ntTSL 52.52□□□□□ -2.013e-6■■■■■ 44.6
SF3B1O75533 SLC25A40-206ENST00000483810 483 ntTSL 42.46□□□□□ -2.023e-6■■■■■ 44.6
SF3B1O75533 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.033e-6■■■■■ 44.6
SF3B1O75533 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.23□□□□□ -2.053e-6■■■■■ 44.6
SF3B1O75533 NUP35-205ENST00000446612 470 ntTSL 31.98□□□□□ -2.093e-6■■■■■ 44.6
SF3B1O75533 PRKCQ-AS1-217ENST00000624678 767 ntTSL 51.96□□□□□ -2.13e-6■■■■■ 44.6
SF3B1O75533 SLC25A40-208ENST00000496348 441 ntTSL 21.89□□□□□ -2.113e-6■■■■■ 44.6
SF3B1O75533 PRKCQ-AS1-219ENST00000625102 905 ntTSL 51.84□□□□□ -2.123e-6■■■■■ 44.6
SF3B1O75533 NDUFAF5-205ENST00000469177 326 ntTSL 31.75□□□□□ -2.133e-6■■■■■ 44.6
SF3B1O75533 PRKCQ-AS1-215ENST00000623015 401 ntTSL 51.04□□□□□ -2.243e-6■■■■■ 44.6
SF3B1O75533 COMMD3-209ENST00000471350 476 ntTSL 20.62□□□□□ -2.313e-6■■■■■ 44.6
SF3B1O75533 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.57□□□□□ -2.323e-6■■■■■ 44.6
SF3B1O75533 TPX2-201ENST00000300403 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.416e-6■■■■■ 44.6
SF3B1O75533 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC12.1□□□□□ -0.476e-6■■■■■ 44.6
SF3B1O75533 MED13L-207ENST00000551197 489 ntTSL 55.91□□□□□ -1.463e-6■■■■■ 44.5
SF3B1O75533 DDX17-206ENST00000467279 712 ntTSL 525.72■■□□□ 1.714e-6■■■■■ 44.5
SF3B1O75533 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.48■□□□□ 0.396e-7■■■■■ 44.5
SF3B1O75533 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.036e-7■■■■■ 44.5
SF3B1O75533 SLC35E2B-201ENST00000480991 2860 ntTSL 214.62□□□□□ -0.076e-7■■■■■ 44.5
SF3B1O75533 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.186e-7■■■■■ 44.5
SF3B1O75533 DDX17-205ENST00000432525 1354 ntTSL 211.62□□□□□ -0.554e-6■■■■■ 44.5
SF3B1O75533 LAMTOR5-AS1-238ENST00000626572 1044 ntTSL 56.02□□□□□ -1.453e-6■■■■■ 44.5
SF3B1O75533 FANCL-210ENST00000481670 522 ntTSL 34.43□□□□□ -1.71e-6■■■■■ 44.5
SF3B1O75533 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.756e-7■■■■■ 44.5
SF3B1O75533 TUBB4B-202ENST00000604929 2035 ntTSL 1 (best)19.98■□□□□ 0.792e-6■■■■■ 44.5
SF3B1O75533 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.122e-6■■■■■ 44.5
SF3B1O75533 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.01■■□□□ 1.117e-6■■■■■ 44.5
SF3B1O75533 HNRNPU-212ENST00000638230 1922 ntTSL 512.78□□□□□ -0.362e-6■■■■■ 44.5
SF3B1O75533 PPP2R5C-212ENST00000554442 800 ntTSL 1 (best) BASIC11.17□□□□□ -0.621e-6■■■■■ 44.4
SF3B1O75533 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC27.77■■■□□ 2.045e-7■■■■■ 44.4
SF3B1O75533 ATP8B2-202ENST00000368489 5861 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.555e-7■■■■■ 44.4
SF3B1O75533 PTP4A2-215ENST00000533408 376 ntTSL 322.72■■□□□ 1.236e-7■■■■■ 44.4
SF3B1O75533 PTP4A2-212ENST00000529477 568 ntTSL 320.83■□□□□ 0.936e-7■■■■■ 44.4
SF3B1O75533 PTP4A2-209ENST00000526960 793 ntTSL 515.97■□□□□ 0.156e-7■■■■■ 44.4
SF3B1O75533 PTP4A2-202ENST00000468531 830 ntTSL 36.65□□□□□ -1.356e-7■■■■■ 44.4
SF3B1O75533 PTP4A2-207ENST00000494444 678 ntTSL 54.14□□□□□ -1.756e-7■■■■■ 44.4
SF3B1O75533 PRMT1-216ENST00000530361 866 ntTSL 319.1■□□□□ 0.655e-7■■■■■ 44.4
SF3B1O75533 LRRC41-205ENST00000498402 2068 ntTSL 218.1■□□□□ 0.491e-7■■■■■ 44.4
SF3B1O75533 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.021e-7■■■■■ 44.4
SF3B1O75533 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC13.48□□□□□ -0.251e-7■■■■■ 44.4
SF3B1O75533 LRRC41-207ENST00000617190 4128 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.551e-7■■■■■ 44.4
SF3B1O75533 TMC6-211ENST00000589271 1099 ntTSL 518.46■□□□□ 0.552e-6■■■■■ 44.4
SF3B1O75533 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.48■■□□□ 1.034e-6■■■■■ 44.3
SF3B1O75533 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.834e-6■■■■■ 44.3
SF3B1O75533 ACADVL-201ENST00000322910 2352 ntTSL 219.53■□□□□ 0.724e-6■■■■■ 44.3
SF3B1O75533 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.93■□□□□ 0.624e-6■■■■■ 44.3
SF3B1O75533 PELP1-205ENST00000570823 484 ntTSL 424.71■■□□□ 1.551e-10■■■■■ 44.3
SF3B1O75533 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.832e-7■■■■■ 44.3
SF3B1O75533 KDM5B-205ENST00000467487 529 ntTSL 319.43■□□□□ 0.71e-10■■■■■ 44.3
SF3B1O75533 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.97■□□□□ 0.632e-7■■■■■ 44.3
SF3B1O75533 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.9■□□□□ 0.462e-7■■■■■ 44.3
SF3B1O75533 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.33■□□□□ 0.22e-7■■■■■ 44.3
SF3B1O75533 GOSR2-247ENST00000640871 1045 ntTSL 515.96■□□□□ 0.152e-7■■■■■ 44.3
SF3B1O75533 GRB10-218ENST00000478162 599 ntTSL 415.26■□□□□ 0.031e-10■■■■■ 44.3
SF3B1O75533 GRB10-222ENST00000490051 578 ntTSL 414.1□□□□□ -0.151e-10■■■■■ 44.3
SF3B1O75533 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC13.87□□□□□ -0.192e-7■■■■■ 44.3
SF3B1O75533 GOSR2-219ENST00000638697 1705 ntTSL 5 BASIC12.6□□□□□ -0.392e-7■■■■■ 44.3
SF3B1O75533 GOSR2-242ENST00000640711 1083 ntTSL 5 BASIC12.22□□□□□ -0.452e-7■■■■■ 44.3
SF3B1O75533 GOSR2-237ENST00000640443 3929 ntTSL 5 BASIC11.99□□□□□ -0.492e-7■■■■■ 44.3
SF3B1O75533 GOSR2-239ENST00000640608 3871 ntTSL 2 BASIC11.64□□□□□ -0.552e-7■■■■■ 44.3
SF3B1O75533 GOSR2-218ENST00000638634 3446 ntTSL 5 BASIC11.09□□□□□ -0.632e-7■■■■■ 44.3
SF3B1O75533 GOSR2-213ENST00000638216 3574 ntTSL 5 BASIC10.65□□□□□ -0.72e-7■■■■■ 44.3
SF3B1O75533 FXYD5-202ENST00000392217 632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.781e-10■■■■■ 44.3
SF3B1O75533 GOSR2-220ENST00000638838 3266 ntAPPRIS ALT1 TSL 5 BASIC9.6□□□□□ -0.872e-7■■■■■ 44.3
SF3B1O75533 GOSR2-215ENST00000638374 2683 ntTSL 5 BASIC9.58□□□□□ -0.882e-7■■■■■ 44.3
SF3B1O75533 GOSR2-234ENST00000640138 3408 ntTSL 5 BASIC9.27□□□□□ -0.932e-7■■■■■ 44.3
SF3B1O75533 GOSR2-232ENST00000640051 3964 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.982e-7■■■■■ 44.3
SF3B1O75533 KDM5B-210ENST00000602511 542 ntTSL 58.7□□□□□ -1.021e-10■■■■■ 44.3
SF3B1O75533 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC8.33□□□□□ -1.082e-7■■■■■ 44.3
SF3B1O75533 GRB10-215ENST00000467386 524 ntTSL 58.16□□□□□ -1.11e-10■■■■■ 44.3
SF3B1O75533 KDM5B-206ENST00000470573 535 ntTSL 47.76□□□□□ -1.171e-10■■■■■ 44.3
SF3B1O75533 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC7.51□□□□□ -1.212e-7■■■■■ 44.3
SF3B1O75533 RICTOR-205ENST00000509567 638 ntTSL 33.31□□□□□ -1.881e-10■■■■■ 44.3
SF3B1O75533 ZNF276-209ENST00000568295 2206 ntTSL 226.5■■□□□ 1.832e-6■■■■■ 44.2
SF3B1O75533 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.682e-6■■■■■ 44.2
SF3B1O75533 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.7■□□□□ 0.92e-6■■■■■ 44.2
SF3B1O75533 ZNF276-204ENST00000562530 1826 ntTSL 217.07■□□□□ 0.322e-6■■■■■ 44.2
SF3B1O75533 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.132e-8■■■■■ 44.2
SF3B1O75533 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.56■□□□□ 0.082e-6■■■■■ 44.2
Retrieved 100 of 46,956 protein–RNA pairs in 557.9 ms