RNA–Protein interactions for RNA: ENST00000508524.1

TOPBP1-206, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 618 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-206ENST00000508524 AEBP2Q6ZN18 517 aaPredicted RBP32.5■■■□□ 2.79
TOPBP1-206ENST00000508524 CHIC1Q5VXU3 224 aa31.47■■■□□ 2.63
TOPBP1-206ENST00000508524 PHF23Q9BUL5 403 aaPredicted RBP27.68■■■□□ 2.02
TOPBP1-206ENST00000508524 SENP3Q9H4L4 574 aaPredicted RBP27.56■■■□□ 2
TOPBP1-206ENST00000508524 FOXD1Q16676 465 aa25.64■■□□□ 1.7
TOPBP1-206ENST00000508524 PLPPR3Q6T4P5 718 aa25.41■■□□□ 1.66
TOPBP1-206ENST00000508524 PPP6R1Q9UPN7 881 aa24.5■■□□□ 1.51
TOPBP1-206ENST00000508524 ADRA2BP18089 450 aa24.43■■□□□ 1.5
TOPBP1-206ENST00000508524 PIAS4Q8N2W9 510 aaPredicted RBP24.09■■□□□ 1.45
TOPBP1-206ENST00000508524 MSH5O43196 834 aa23.7■■□□□ 1.38
TOPBP1-206ENST00000508524 PPP4R3CPQ6ZMV5 832 aa22.37■■□□□ 1.17
TOPBP1-206ENST00000508524 SCAF1Q9H7N4 1312 aaKnown RBP22.29■■□□□ 1.16
TOPBP1-206ENST00000508524 MAPK8IP2Q13387 824 aaPredicted RBP22.25■■□□□ 1.15
TOPBP1-206ENST00000508524 POTEDQ86YR6 584 aa22.05■■□□□ 1.12
TOPBP1-206ENST00000508524 DMRT2Q9Y5R5 561 aa21.98■■□□□ 1.11
TOPBP1-206ENST00000508524 CNKSR2Q8WXI2 1034 aa21.79■■□□□ 1.08
TOPBP1-206ENST00000508524 NCBP3Q53F19 620 aaKnown RBP21.67■■□□□ 1.06
TOPBP1-206ENST00000508524 KCNA4P22459 653 aa21.6■■□□□ 1.05
TOPBP1-206ENST00000508524 HOXD11P31277 338 aaPredicted RBP21.44■■□□□ 1.02
TOPBP1-206ENST00000508524 RNF216Q9NWF9 866 aaPredicted RBP21.44■■□□□ 1.02
TOPBP1-206ENST00000508524 NPM3O75607 178 aaKnown RBP21.42■■□□□ 1.02
TOPBP1-206ENST00000508524 DCAF8L1A6NGE4 600 aa20.99■□□□□ 0.95
TOPBP1-206ENST00000508524 DNAJC5BQ9UF47 199 aa20.86■□□□□ 0.93
TOPBP1-206ENST00000508524 SLC4A1APQ9BWU0 796 aaKnown RBP20.49■□□□□ 0.87
TOPBP1-206ENST00000508524 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.37■□□□□ 0.85
TOPBP1-206ENST00000508524 RNF39Q9H2S5 420 aa20.32■□□□□ 0.84
TOPBP1-206ENST00000508524 SLC4A2P04920 1241 aa20.31■□□□□ 0.84
TOPBP1-206ENST00000508524 U3KPZ7 1027 aaPredicted RBP20.08■□□□□ 0.81
TOPBP1-206ENST00000508524 C1QBPQ07021 282 aaKnown RBP20.03■□□□□ 0.8
TOPBP1-206ENST00000508524 FOXD4L1Q9NU39 408 aa19.93■□□□□ 0.78
TOPBP1-206ENST00000508524 CACNB1Q02641 598 aaPredicted RBP19.92■□□□□ 0.78
TOPBP1-206ENST00000508524 ZBTB22O15209 634 aa19.91■□□□□ 0.78
TOPBP1-206ENST00000508524 MYCNP04198 464 aaPredicted RBP19.77■□□□□ 0.76
TOPBP1-206ENST00000508524 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.67■□□□□ 0.74
TOPBP1-206ENST00000508524 HNRNPUL2Q1KMD3 747 aaKnown RBP19.67■□□□□ 0.74
TOPBP1-206ENST00000508524 EHMT2Q96KQ7 1210 aa19.63■□□□□ 0.73
TOPBP1-206ENST00000508524 SAMD1Q6SPF0 538 aaPredicted RBP19.61■□□□□ 0.73
TOPBP1-206ENST00000508524 SPINK5Q9NQ38 1064 aaPredicted RBP19.59■□□□□ 0.73
TOPBP1-206ENST00000508524 CSRNP3Q8WYN3 585 aa19.56■□□□□ 0.72
TOPBP1-206ENST00000508524 APLP2Q06481 763 aa19.5■□□□□ 0.71
TOPBP1-206ENST00000508524 CAPN15O75808 1086 aa19.47■□□□□ 0.71
TOPBP1-206ENST00000508524 TRHP20396 242 aaPredicted RBP19.32■□□□□ 0.68
TOPBP1-206ENST00000508524 ZNF219Q9P2Y4 722 aaPredicted RBP19.32■□□□□ 0.68
TOPBP1-206ENST00000508524 ATF5Q9Y2D1 282 aaPredicted RBP19.3■□□□□ 0.68
TOPBP1-206ENST00000508524 ATXN8OSP0DMR3 200 aa19.24■□□□□ 0.67
TOPBP1-206ENST00000508524 DSG3P32926 999 aa19.24■□□□□ 0.67
TOPBP1-206ENST00000508524 ABCB7O75027 752 aa19.1■□□□□ 0.65
TOPBP1-206ENST00000508524 POLA2Q14181 598 aa18.97■□□□□ 0.63
TOPBP1-206ENST00000508524 ZBTB12Q9Y330 459 aaPredicted RBP18.62■□□□□ 0.57
TOPBP1-206ENST00000508524 MKRN4PQ13434 485 aaPredicted RBP18.46■□□□□ 0.55
TOPBP1-206ENST00000508524 FBLN2P98095 1184 aa18.43■□□□□ 0.54
TOPBP1-206ENST00000508524 OSCARQ8IYS5 282 aa18.36■□□□□ 0.53
TOPBP1-206ENST00000508524 RBM42Q9BTD8 480 aaKnown RBP18.3■□□□□ 0.52
TOPBP1-206ENST00000508524 SPDYE2BA6NHP3 402 aa18.11■□□□□ 0.49
TOPBP1-206ENST00000508524 SPDYE6P0CI01 402 aa18.11■□□□□ 0.49
TOPBP1-206ENST00000508524 SPDYE2Q495Y8 402 aa18.11■□□□□ 0.49
TOPBP1-206ENST00000508524 AKT1S1Q96B36 256 aa18.04■□□□□ 0.48
TOPBP1-206ENST00000508524 ZNF692Q9BU19 519 aaPredicted RBP17.99■□□□□ 0.47
TOPBP1-206ENST00000508524 SSUH2Q9Y2M2 353 aa17.99■□□□□ 0.47
TOPBP1-206ENST00000508524 REM2Q8IYK8 340 aaPredicted RBP17.88■□□□□ 0.45
TOPBP1-206ENST00000508524 SPDYE4A6NLX3 237 aa17.87■□□□□ 0.45
TOPBP1-206ENST00000508524 PABPN1Q86U42 306 aaKnown RBP eCLIP17.76■□□□□ 0.43
TOPBP1-206ENST00000508524 PITPNM1O00562 1244 aa17.7■□□□□ 0.42
TOPBP1-206ENST00000508524 FKBP8Q14318 412 aa17.66■□□□□ 0.42
TOPBP1-206ENST00000508524 CHRDL2Q6WN34 429 aa17.66■□□□□ 0.42
TOPBP1-206ENST00000508524 SPDYE1Q8NFV5 336 aaPredicted RBP17.63■□□□□ 0.41
TOPBP1-206ENST00000508524 PROM2Q8N271 834 aa17.61■□□□□ 0.41
TOPBP1-206ENST00000508524 CLEC11AQ9Y240 323 aa17.55■□□□□ 0.4
TOPBP1-206ENST00000508524 FXR2P51116 673 aaKnown RBP eCLIP17.41■□□□□ 0.38
TOPBP1-206ENST00000508524 PIP4P2Q8N4L2 257 aa17.4■□□□□ 0.38
TOPBP1-206ENST00000508524 POTEHQ6S545 545 aa17.39■□□□□ 0.37
TOPBP1-206ENST00000508524 STAG3Q9UJ98 1225 aa17.39■□□□□ 0.37
TOPBP1-206ENST00000508524 PRR29P0C7W0 189 aa17.35■□□□□ 0.37
TOPBP1-206ENST00000508524 PRKAR2AP13861 404 aaKnown RBP17.22■□□□□ 0.35
TOPBP1-206ENST00000508524 CHADLQ6NUI6 762 aa17.18■□□□□ 0.34
TOPBP1-206ENST00000508524 CREBZFQ9NS37 354 aa17.13■□□□□ 0.33
TOPBP1-206ENST00000508524 FBXO3Q9UK99 471 aa17.07■□□□□ 0.32
TOPBP1-206ENST00000508524 FARP1Q9Y4F1 1045 aaPredicted RBP16.99■□□□□ 0.31
TOPBP1-206ENST00000508524 MNX1P50219 401 aaPredicted RBP16.95■□□□□ 0.3
TOPBP1-206ENST00000508524 MIER1Q8N108 512 aa16.94■□□□□ 0.3
TOPBP1-206ENST00000508524 VASPP50552 380 aaPredicted RBP16.89■□□□□ 0.29
TOPBP1-206ENST00000508524 PLCD3Q8N3E9 789 aa16.89■□□□□ 0.29
TOPBP1-206ENST00000508524 HAX1O00165 279 aa16.86■□□□□ 0.29
TOPBP1-206ENST00000508524 PLEKHG5O94827 1062 aa16.84■□□□□ 0.29
TOPBP1-206ENST00000508524 C19orf67A6NJJ6 358 aa16.82■□□□□ 0.28
TOPBP1-206ENST00000508524 NPM1P06748 294 aaKnown RBP eCLIP16.78■□□□□ 0.28
TOPBP1-206ENST00000508524 EVX2Q03828 476 aa16.77■□□□□ 0.28
TOPBP1-206ENST00000508524 CD44P16070 742 aaKnown RBP16.71■□□□□ 0.27
TOPBP1-206ENST00000508524 ZBTB47Q9UFB7 747 aaPredicted RBP16.71■□□□□ 0.27
TOPBP1-206ENST00000508524 IFNLR1Q8IU57 520 aaPredicted RBP16.66■□□□□ 0.26
TOPBP1-206ENST00000508524 SP7Q8TDD2 431 aaPredicted RBP16.61■□□□□ 0.25
TOPBP1-206ENST00000508524 NUBP1P53384 320 aa16.6■□□□□ 0.25
TOPBP1-206ENST00000508524 RASEFQ8IZ41 740 aa16.59■□□□□ 0.25
TOPBP1-206ENST00000508524 KLHL34Q8N239 644 aa16.59■□□□□ 0.25
TOPBP1-206ENST00000508524 ZRANB1Q9UGI0 708 aa16.57■□□□□ 0.24
TOPBP1-206ENST00000508524 PAK3O75914 559 aaPredicted RBP16.54■□□□□ 0.24
TOPBP1-206ENST00000508524 TSPYL2Q9H2G4 693 aaPredicted RBP16.52■□□□□ 0.24
TOPBP1-206ENST00000508524 ZNF579Q8NAF0 562 aaKnown RBP16.51■□□□□ 0.23
TOPBP1-206ENST00000508524 SPOCK2Q92563 424 aa16.46■□□□□ 0.23
TOPBP1-206ENST00000508524 CCDC61Q9Y6R9 512 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms