RNA–Protein interactions for RNA: ENST00000471350.1

COMMD3-209, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 476 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-209ENST00000471350 AEBP2Q6ZN18 517 aaPredicted RBP15.58■□□□□ 0.08
COMMD3-209ENST00000471350 CHIC1Q5VXU3 224 aa14.72□□□□□ -0.05
COMMD3-209ENST00000471350 SENP3Q9H4L4 574 aaPredicted RBP13.13□□□□□ -0.31
COMMD3-209ENST00000471350 PHF23Q9BUL5 403 aaPredicted RBP13.01□□□□□ -0.33
COMMD3-209ENST00000471350 FOXD1Q16676 465 aa12.33□□□□□ -0.44
COMMD3-209ENST00000471350 PLPPR3Q6T4P5 718 aa11.68□□□□□ -0.54
COMMD3-209ENST00000471350 PPP6R1Q9UPN7 881 aa11.58□□□□□ -0.56
COMMD3-209ENST00000471350 ADRA2BP18089 450 aa11.48□□□□□ -0.57
COMMD3-209ENST00000471350 MSH5O43196 834 aa11.43□□□□□ -0.58
COMMD3-209ENST00000471350 PIAS4Q8N2W9 510 aaPredicted RBP11.43□□□□□ -0.58
COMMD3-209ENST00000471350 POTEDQ86YR6 584 aa11.24□□□□□ -0.61
COMMD3-209ENST00000471350 MAPK8IP2Q13387 824 aaPredicted RBP10.57□□□□□ -0.72
COMMD3-209ENST00000471350 DMRT2Q9Y5R5 561 aa10.47□□□□□ -0.73
COMMD3-209ENST00000471350 SCAF1Q9H7N4 1312 aaKnown RBP10.34□□□□□ -0.75
COMMD3-209ENST00000471350 PPP4R3CPQ6ZMV5 832 aa10.28□□□□□ -0.76
COMMD3-209ENST00000471350 HOXD11P31277 338 aaPredicted RBP10.12□□□□□ -0.79
COMMD3-209ENST00000471350 CNKSR2Q8WXI2 1034 aa10.06□□□□□ -0.8
COMMD3-209ENST00000471350 RNF216Q9NWF9 866 aaPredicted RBP9.99□□□□□ -0.81
COMMD3-209ENST00000471350 DCAF8L1A6NGE4 600 aa9.88□□□□□ -0.83
COMMD3-209ENST00000471350 RNF39Q9H2S5 420 aa9.84□□□□□ -0.83
COMMD3-209ENST00000471350 CACNB1Q02641 598 aaPredicted RBP9.78□□□□□ -0.84
COMMD3-209ENST00000471350 NPM3O75607 178 aaKnown RBP9.77□□□□□ -0.85
COMMD3-209ENST00000471350 NCBP3Q53F19 620 aaKnown RBP9.77□□□□□ -0.85
COMMD3-209ENST00000471350 DNAJC5BQ9UF47 199 aa9.75□□□□□ -0.85
COMMD3-209ENST00000471350 C1QBPQ07021 282 aaKnown RBP9.63□□□□□ -0.87
COMMD3-209ENST00000471350 KCNA4P22459 653 aa9.59□□□□□ -0.87
COMMD3-209ENST00000471350 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.5□□□□□ -0.89
COMMD3-209ENST00000471350 U3KPZ7 1027 aaPredicted RBP9.43□□□□□ -0.9
COMMD3-209ENST00000471350 SLC4A2P04920 1241 aa9.39□□□□□ -0.91
COMMD3-209ENST00000471350 SPINK5Q9NQ38 1064 aaPredicted RBP9.28□□□□□ -0.92
COMMD3-209ENST00000471350 DSG3P32926 999 aa9.21□□□□□ -0.94
COMMD3-209ENST00000471350 CAPN15O75808 1086 aa9.14□□□□□ -0.95
COMMD3-209ENST00000471350 TRHP20396 242 aaPredicted RBP9.01□□□□□ -0.97
COMMD3-209ENST00000471350 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9□□□□□ -0.97
COMMD3-209ENST00000471350 HNRNPUL2Q1KMD3 747 aaKnown RBP9□□□□□ -0.97
COMMD3-209ENST00000471350 SAMD1Q6SPF0 538 aaPredicted RBP8.99□□□□□ -0.97
COMMD3-209ENST00000471350 ZNF219Q9P2Y4 722 aaPredicted RBP8.99□□□□□ -0.97
COMMD3-209ENST00000471350 ABCB7O75027 752 aa8.98□□□□□ -0.97
COMMD3-209ENST00000471350 SLC4A1APQ9BWU0 796 aaKnown RBP8.98□□□□□ -0.97
COMMD3-209ENST00000471350 MYCNP04198 464 aaPredicted RBP8.96□□□□□ -0.98
COMMD3-209ENST00000471350 APLP2Q06481 763 aa8.96□□□□□ -0.98
COMMD3-209ENST00000471350 ZBTB22O15209 634 aa8.9□□□□□ -0.98
COMMD3-209ENST00000471350 FOXD4L1Q9NU39 408 aa8.9□□□□□ -0.98
COMMD3-209ENST00000471350 ATF5Q9Y2D1 282 aaPredicted RBP8.88□□□□□ -0.99
COMMD3-209ENST00000471350 POLA2Q14181 598 aa8.82□□□□□ -1
COMMD3-209ENST00000471350 POTEHQ6S545 545 aa8.77□□□□□ -1.01
COMMD3-209ENST00000471350 RBM42Q9BTD8 480 aaKnown RBP8.66□□□□□ -1.02
COMMD3-209ENST00000471350 ATXN8OSP0DMR3 200 aa8.61□□□□□ -1.03
COMMD3-209ENST00000471350 OSCARQ8IYS5 282 aa8.56□□□□□ -1.04
COMMD3-209ENST00000471350 ZBTB12Q9Y330 459 aaPredicted RBP8.55□□□□□ -1.04
COMMD3-209ENST00000471350 CHRDL2Q6WN34 429 aa8.54□□□□□ -1.04
COMMD3-209ENST00000471350 AKT1S1Q96B36 256 aa8.52□□□□□ -1.05
COMMD3-209ENST00000471350 MKRN4PQ13434 485 aaPredicted RBP8.47□□□□□ -1.05
COMMD3-209ENST00000471350 REM2Q8IYK8 340 aaPredicted RBP8.47□□□□□ -1.05
COMMD3-209ENST00000471350 CSRNP3Q8WYN3 585 aa8.44□□□□□ -1.06
COMMD3-209ENST00000471350 PITPNM1O00562 1244 aa8.39□□□□□ -1.07
COMMD3-209ENST00000471350 PIP4P2Q8N4L2 257 aa8.38□□□□□ -1.07
COMMD3-209ENST00000471350 SPDYE2BA6NHP3 402 aa8.35□□□□□ -1.07
COMMD3-209ENST00000471350 SPDYE6P0CI01 402 aa8.35□□□□□ -1.07
COMMD3-209ENST00000471350 SPDYE2Q495Y8 402 aa8.35□□□□□ -1.07
COMMD3-209ENST00000471350 FXR2P51116 673 aaKnown RBP eCLIP8.34□□□□□ -1.07
COMMD3-209ENST00000471350 FBLN2P98095 1184 aa8.33□□□□□ -1.08
COMMD3-209ENST00000471350 SSUH2Q9Y2M2 353 aa8.32□□□□□ -1.08
COMMD3-209ENST00000471350 SP7Q8TDD2 431 aaPredicted RBP8.22□□□□□ -1.09
COMMD3-209ENST00000471350 EHMT2Q96KQ7 1210 aa8.22□□□□□ -1.09
COMMD3-209ENST00000471350 ZNF692Q9BU19 519 aaPredicted RBP8.22□□□□□ -1.09
COMMD3-209ENST00000471350 EVX2Q03828 476 aa8.2□□□□□ -1.1
COMMD3-209ENST00000471350 SPDYE1Q8NFV5 336 aaPredicted RBP8.17□□□□□ -1.1
COMMD3-209ENST00000471350 PABPN1Q86U42 306 aaKnown RBP eCLIP8.14□□□□□ -1.11
COMMD3-209ENST00000471350 PRKAR2AP13861 404 aaKnown RBP8.13□□□□□ -1.11
COMMD3-209ENST00000471350 CLEC11AQ9Y240 323 aa8.13□□□□□ -1.11
COMMD3-209ENST00000471350 HAX1O00165 279 aa8.12□□□□□ -1.11
COMMD3-209ENST00000471350 C19orf67A6NJJ6 358 aa8.08□□□□□ -1.12
COMMD3-209ENST00000471350 CHADLQ6NUI6 762 aa8.07□□□□□ -1.12
COMMD3-209ENST00000471350 PRR29P0C7W0 189 aa8.02□□□□□ -1.13
COMMD3-209ENST00000471350 SPDYE4A6NLX3 237 aa7.95□□□□□ -1.14
COMMD3-209ENST00000471350 FARP1Q9Y4F1 1045 aaPredicted RBP7.94□□□□□ -1.14
COMMD3-209ENST00000471350 GABBR2O75899 941 aa7.93□□□□□ -1.14
COMMD3-209ENST00000471350 CREBZFQ9NS37 354 aa7.93□□□□□ -1.14
COMMD3-209ENST00000471350 PROM2Q8N271 834 aa7.9□□□□□ -1.14
COMMD3-209ENST00000471350 CD44P16070 742 aaKnown RBP7.86□□□□□ -1.15
COMMD3-209ENST00000471350 POTEIP0CG38 1075 aa7.85□□□□□ -1.15
COMMD3-209ENST00000471350 MNX1P50219 401 aaPredicted RBP7.85□□□□□ -1.15
COMMD3-209ENST00000471350 STAG3Q9UJ98 1225 aa7.84□□□□□ -1.15
COMMD3-209ENST00000471350 ZNF579Q8NAF0 562 aaKnown RBP7.78□□□□□ -1.16
COMMD3-209ENST00000471350 ZRANB1Q9UGI0 708 aa7.74□□□□□ -1.17
COMMD3-209ENST00000471350 GALR2O43603 387 aaPredicted RBP7.71□□□□□ -1.18
COMMD3-209ENST00000471350 CLCN6P51797 869 aa7.71□□□□□ -1.18
COMMD3-209ENST00000471350 LHX8Q68G74 356 aa7.69□□□□□ -1.18
COMMD3-209ENST00000471350 PHF12Q96QT6 1004 aa7.69□□□□□ -1.18
COMMD3-209ENST00000471350 NPM1P06748 294 aaKnown RBP eCLIP7.64□□□□□ -1.19
COMMD3-209ENST00000471350 PELP1Q8IZL8 1130 aaKnown RBP7.61□□□□□ -1.19
COMMD3-209ENST00000471350 CCDC61Q9Y6R9 512 aa7.61□□□□□ -1.19
COMMD3-209ENST00000471350 DCBLD2Q96PD2 775 aa7.6□□□□□ -1.19
COMMD3-209ENST00000471350 POTEB2H3BUK9 544 aa7.59□□□□□ -1.19
COMMD3-209ENST00000471350 MS4A3Q96HJ5 214 aa7.59□□□□□ -1.19
COMMD3-209ENST00000471350 PAK3O75914 559 aaPredicted RBP7.57□□□□□ -1.2
COMMD3-209ENST00000471350 RASEFQ8IZ41 740 aa7.57□□□□□ -1.2
COMMD3-209ENST00000471350 FKBP8Q14318 412 aa7.56□□□□□ -1.2
COMMD3-209ENST00000471350 ASTLQ6HA08 431 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms