RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 AEBP2Q6ZN18 517 aaPredicted RBP12.35□□□□□ -0.43
SNRNP48-202ENST00000496946 CHIC1Q5VXU3 224 aa11.79□□□□□ -0.52
SNRNP48-202ENST00000496946 PHF23Q9BUL5 403 aaPredicted RBP10.55□□□□□ -0.72
SNRNP48-202ENST00000496946 SENP3Q9H4L4 574 aaPredicted RBP10.21□□□□□ -0.77
SNRNP48-202ENST00000496946 FOXD1Q16676 465 aa9.67□□□□□ -0.86
SNRNP48-202ENST00000496946 POTEDQ86YR6 584 aa9.52□□□□□ -0.88
SNRNP48-202ENST00000496946 PLPPR3Q6T4P5 718 aa9.51□□□□□ -0.89
SNRNP48-202ENST00000496946 PPP6R1Q9UPN7 881 aa9.41□□□□□ -0.9
SNRNP48-202ENST00000496946 ADRA2BP18089 450 aa9.36□□□□□ -0.91
SNRNP48-202ENST00000496946 PIAS4Q8N2W9 510 aaPredicted RBP9.1□□□□□ -0.95
SNRNP48-202ENST00000496946 MSH5O43196 834 aa8.69□□□□□ -1.02
SNRNP48-202ENST00000496946 MAPK8IP2Q13387 824 aaPredicted RBP8.57□□□□□ -1.04
SNRNP48-202ENST00000496946 PPP4R3CPQ6ZMV5 832 aa8.45□□□□□ -1.06
SNRNP48-202ENST00000496946 KCNA4P22459 653 aa8.37□□□□□ -1.07
SNRNP48-202ENST00000496946 SCAF1Q9H7N4 1312 aaKnown RBP8.2□□□□□ -1.1
SNRNP48-202ENST00000496946 DMRT2Q9Y5R5 561 aa8.17□□□□□ -1.1
SNRNP48-202ENST00000496946 NPM3O75607 178 aaKnown RBP8.16□□□□□ -1.1
SNRNP48-202ENST00000496946 CNKSR2Q8WXI2 1034 aa8.12□□□□□ -1.11
SNRNP48-202ENST00000496946 DCAF8L1A6NGE4 600 aa8.04□□□□□ -1.12
SNRNP48-202ENST00000496946 NCBP3Q53F19 620 aaKnown RBP8.02□□□□□ -1.12
SNRNP48-202ENST00000496946 RNF216Q9NWF9 866 aaPredicted RBP7.96□□□□□ -1.14
SNRNP48-202ENST00000496946 HOXD11P31277 338 aaPredicted RBP7.96□□□□□ -1.14
SNRNP48-202ENST00000496946 SLC4A1APQ9BWU0 796 aaKnown RBP7.82□□□□□ -1.16
SNRNP48-202ENST00000496946 EHMT2Q96KQ7 1210 aa7.8□□□□□ -1.16
SNRNP48-202ENST00000496946 ZBTB22O15209 634 aa7.77□□□□□ -1.17
SNRNP48-202ENST00000496946 SLC4A2P04920 1241 aa7.76□□□□□ -1.17
SNRNP48-202ENST00000496946 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.67□□□□□ -1.186e-6■□□□□ 8.3
SNRNP48-202ENST00000496946 U3KPZ7 1027 aaPredicted RBP7.6□□□□□ -1.19
SNRNP48-202ENST00000496946 CSRNP3Q8WYN3 585 aa7.6□□□□□ -1.19
SNRNP48-202ENST00000496946 RNF39Q9H2S5 420 aa7.58□□□□□ -1.2
SNRNP48-202ENST00000496946 DNAJC5BQ9UF47 199 aa7.56□□□□□ -1.2
SNRNP48-202ENST00000496946 SPINK5Q9NQ38 1064 aaPredicted RBP7.52□□□□□ -1.21
SNRNP48-202ENST00000496946 FOXD4L1Q9NU39 408 aa7.51□□□□□ -1.21
SNRNP48-202ENST00000496946 ATF5Q9Y2D1 282 aaPredicted RBP7.49□□□□□ -1.21
SNRNP48-202ENST00000496946 CACNB1Q02641 598 aaPredicted RBP7.44□□□□□ -1.22
SNRNP48-202ENST00000496946 TRHP20396 242 aaPredicted RBP7.4□□□□□ -1.23
SNRNP48-202ENST00000496946 MYCNP04198 464 aaPredicted RBP7.39□□□□□ -1.23
SNRNP48-202ENST00000496946 CAPN15O75808 1086 aa7.38□□□□□ -1.23
SNRNP48-202ENST00000496946 C1QBPQ07021 282 aaKnown RBP7.36□□□□□ -1.23
SNRNP48-202ENST00000496946 ABCB7O75027 752 aa7.36□□□□□ -1.23
SNRNP48-202ENST00000496946 SAMD1Q6SPF0 538 aaPredicted RBP7.25□□□□□ -1.25
SNRNP48-202ENST00000496946 DSG3P32926 999 aa7.24□□□□□ -1.25
SNRNP48-202ENST00000496946 POLA2Q14181 598 aa7.24□□□□□ -1.25
SNRNP48-202ENST00000496946 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.21□□□□□ -1.26
SNRNP48-202ENST00000496946 HNRNPUL2Q1KMD3 747 aaKnown RBP7.21□□□□□ -1.26
SNRNP48-202ENST00000496946 POTEHQ6S545 545 aa7.17□□□□□ -1.26
SNRNP48-202ENST00000496946 ZNF219Q9P2Y4 722 aaPredicted RBP7.17□□□□□ -1.26
SNRNP48-202ENST00000496946 ATXN8OSP0DMR3 200 aa7.08□□□□□ -1.28
SNRNP48-202ENST00000496946 MKRN4PQ13434 485 aaPredicted RBP7.08□□□□□ -1.28
SNRNP48-202ENST00000496946 OSCARQ8IYS5 282 aa7.04□□□□□ -1.28
SNRNP48-202ENST00000496946 APLP2Q06481 763 aa7.03□□□□□ -1.28
SNRNP48-202ENST00000496946 FKBP8Q14318 412 aa6.87□□□□□ -1.31
SNRNP48-202ENST00000496946 FBLN2P98095 1184 aa6.85□□□□□ -1.31
SNRNP48-202ENST00000496946 ZNF692Q9BU19 519 aaPredicted RBP6.81□□□□□ -1.32
SNRNP48-202ENST00000496946 SPDYE4A6NLX3 237 aa6.8□□□□□ -1.32
SNRNP48-202ENST00000496946 ZBTB12Q9Y330 459 aaPredicted RBP6.79□□□□□ -1.32
SNRNP48-202ENST00000496946 PABPN1Q86U42 306 aaKnown RBP eCLIP6.77□□□□□ -1.33
SNRNP48-202ENST00000496946 CLEC11AQ9Y240 323 aa6.73□□□□□ -1.33
SNRNP48-202ENST00000496946 REM2Q8IYK8 340 aaPredicted RBP6.72□□□□□ -1.33
SNRNP48-202ENST00000496946 SPDYE2BA6NHP3 402 aa6.72□□□□□ -1.33
SNRNP48-202ENST00000496946 SPDYE6P0CI01 402 aa6.72□□□□□ -1.33
SNRNP48-202ENST00000496946 SPDYE2Q495Y8 402 aa6.72□□□□□ -1.33
SNRNP48-202ENST00000496946 SSUH2Q9Y2M2 353 aa6.72□□□□□ -1.33
SNRNP48-202ENST00000496946 PITPNM1O00562 1244 aa6.7□□□□□ -1.34
SNRNP48-202ENST00000496946 RBM42Q9BTD8 480 aaKnown RBP6.69□□□□□ -1.34
SNRNP48-202ENST00000496946 AKT1S1Q96B36 256 aa6.65□□□□□ -1.34
SNRNP48-202ENST00000496946 CHADLQ6NUI6 762 aa6.64□□□□□ -1.35
SNRNP48-202ENST00000496946 PLSCR2Q9NRY7 297 aa6.64□□□□□ -1.35
SNRNP48-202ENST00000496946 CHRDL2Q6WN34 429 aa6.63□□□□□ -1.35
SNRNP48-202ENST00000496946 PROM2Q8N271 834 aa6.58□□□□□ -1.36
SNRNP48-202ENST00000496946 PIP4P2Q8N4L2 257 aa6.55□□□□□ -1.36
SNRNP48-202ENST00000496946 PRR29P0C7W0 189 aa6.54□□□□□ -1.36
SNRNP48-202ENST00000496946 SPDYE1Q8NFV5 336 aaPredicted RBP6.54□□□□□ -1.36
SNRNP48-202ENST00000496946 PRKAR2AP13861 404 aaKnown RBP6.51□□□□□ -1.37
SNRNP48-202ENST00000496946 MIER1Q8N108 512 aa6.48□□□□□ -1.37
SNRNP48-202ENST00000496946 EVX2Q03828 476 aa6.47□□□□□ -1.37
SNRNP48-202ENST00000496946 FXR2P51116 673 aaKnown RBP eCLIP6.46□□□□□ -1.37
SNRNP48-202ENST00000496946 IFNLR1Q8IU57 520 aaPredicted RBP6.46□□□□□ -1.37
SNRNP48-202ENST00000496946 CREBZFQ9NS37 354 aa6.46□□□□□ -1.37
SNRNP48-202ENST00000496946 VASPP50552 380 aaPredicted RBP6.46□□□□□ -1.38
SNRNP48-202ENST00000496946 PLCD3Q8N3E9 789 aa6.46□□□□□ -1.38
SNRNP48-202ENST00000496946 MNX1P50219 401 aaPredicted RBP6.44□□□□□ -1.38
SNRNP48-202ENST00000496946 FARP1Q9Y4F1 1045 aaPredicted RBP6.4□□□□□ -1.39
SNRNP48-202ENST00000496946 HAX1O00165 279 aa6.38□□□□□ -1.39
SNRNP48-202ENST00000496946 KLHL34Q8N239 644 aa6.37□□□□□ -1.39
SNRNP48-202ENST00000496946 STAG3Q9UJ98 1225 aa6.37□□□□□ -1.39
SNRNP48-202ENST00000496946 RASEFQ8IZ41 740 aa6.37□□□□□ -1.39
SNRNP48-202ENST00000496946 FBXO3Q9UK99 471 aa6.37□□□□□ -1.39
SNRNP48-202ENST00000496946 TSPYL2Q9H2G4 693 aaPredicted RBP6.36□□□□□ -1.39
SNRNP48-202ENST00000496946 CD44P16070 742 aaKnown RBP6.31□□□□□ -1.4
SNRNP48-202ENST00000496946 PHF12Q96QT6 1004 aa6.29□□□□□ -1.4
SNRNP48-202ENST00000496946 NUBP1P53384 320 aa6.29□□□□□ -1.4
SNRNP48-202ENST00000496946 PYGBP11216 843 aa6.28□□□□□ -1.4
SNRNP48-202ENST00000496946 RTN4Q9NQC3 1192 aaKnown RBP6.27□□□□□ -1.41
SNRNP48-202ENST00000496946 CIZ1Q9ULV3 898 aaPredicted RBP6.27□□□□□ -1.41
SNRNP48-202ENST00000496946 ZRANB1Q9UGI0 708 aa6.26□□□□□ -1.41
SNRNP48-202ENST00000496946 TRPC6Q9Y210 931 aa6.25□□□□□ -1.41
SNRNP48-202ENST00000496946 PLEKHG5O94827 1062 aa6.24□□□□□ -1.41
SNRNP48-202ENST00000496946 C19orf67A6NJJ6 358 aa6.24□□□□□ -1.41
SNRNP48-202ENST00000496946 GALR2O43603 387 aaPredicted RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms