Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.93■■■□□ 2.54
CCDC65Q8IXS2 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.92■■■□□ 2.54
CCDC65Q8IXS2 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
CCDC65Q8IXS2 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.91■■■□□ 2.54
CCDC65Q8IXS2 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
CCDC65Q8IXS2 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC65Q8IXS2 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC65Q8IXS2 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC65Q8IXS2 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.85■■■□□ 2.53
CCDC65Q8IXS2 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.84■■■□□ 2.53
CCDC65Q8IXS2 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.83■■■□□ 2.53
CCDC65Q8IXS2 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.83■■■□□ 2.53
CCDC65Q8IXS2 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC65Q8IXS2 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.82■■■□□ 2.52
CCDC65Q8IXS2 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC65Q8IXS2 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.8■■■□□ 2.52
CCDC65Q8IXS2 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
CCDC65Q8IXS2 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.78■■■□□ 2.52
CCDC65Q8IXS2 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC65Q8IXS2 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.75■■■□□ 2.51
CCDC65Q8IXS2 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC65Q8IXS2 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC65Q8IXS2 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
CCDC65Q8IXS2 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.71■■■□□ 2.51
CCDC65Q8IXS2 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.71■■■□□ 2.51
CCDC65Q8IXS2 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC65Q8IXS2 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CCDC65Q8IXS2 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC65Q8IXS2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.68■■■□□ 2.5
CCDC65Q8IXS2 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC65Q8IXS2 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC65Q8IXS2 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC65Q8IXS2 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
CCDC65Q8IXS2 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC65Q8IXS2 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC65Q8IXS2 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC65Q8IXS2 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.61■■■□□ 2.49
CCDC65Q8IXS2 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
CCDC65Q8IXS2 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC65Q8IXS2 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
CCDC65Q8IXS2 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.6■■■□□ 2.49
CCDC65Q8IXS2 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
CCDC65Q8IXS2 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC65Q8IXS2 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.58■■■□□ 2.49
CCDC65Q8IXS2 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.57■■■□□ 2.48
CCDC65Q8IXS2 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC65Q8IXS2 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC65Q8IXS2 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC65Q8IXS2 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC65Q8IXS2 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC65Q8IXS2 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.55■■■□□ 2.48
CCDC65Q8IXS2 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC65Q8IXS2 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC65Q8IXS2 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.54■■■□□ 2.48
CCDC65Q8IXS2 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC65Q8IXS2 AC120057.4-201ENST00000624722 1615 ntBASIC30.54■■■□□ 2.48
CCDC65Q8IXS2 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.53■■■□□ 2.48
CCDC65Q8IXS2 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CCDC65Q8IXS2 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.5■■■□□ 2.47
CCDC65Q8IXS2 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC65Q8IXS2 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC65Q8IXS2 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.48■■■□□ 2.47
CCDC65Q8IXS2 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
CCDC65Q8IXS2 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CCDC65Q8IXS2 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CCDC65Q8IXS2 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.46■■■□□ 2.47
CCDC65Q8IXS2 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
CCDC65Q8IXS2 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC65Q8IXS2 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.41■■■□□ 2.46
CCDC65Q8IXS2 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.41■■■□□ 2.46
CCDC65Q8IXS2 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC65Q8IXS2 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
CCDC65Q8IXS2 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC65Q8IXS2 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC65Q8IXS2 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC65Q8IXS2 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC65Q8IXS2 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.35■■■□□ 2.45
CCDC65Q8IXS2 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.34■■■□□ 2.45
CCDC65Q8IXS2 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC65Q8IXS2 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.34■■■□□ 2.45
CCDC65Q8IXS2 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.34■■■□□ 2.45
CCDC65Q8IXS2 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC65Q8IXS2 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC65Q8IXS2 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.31■■■□□ 2.44
CCDC65Q8IXS2 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC65Q8IXS2 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC65Q8IXS2 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC65Q8IXS2 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.23■■■□□ 2.43
CCDC65Q8IXS2 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.23■■■□□ 2.43
CCDC65Q8IXS2 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC65Q8IXS2 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC65Q8IXS2 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC65Q8IXS2 RARRES2P7-201ENST00000567349 469 ntBASIC30.21■■■□□ 2.43
CCDC65Q8IXS2 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.21■■■□□ 2.43
CCDC65Q8IXS2 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
CCDC65Q8IXS2 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.18■■■□□ 2.42
CCDC65Q8IXS2 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC65Q8IXS2 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC65Q8IXS2 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC65Q8IXS2 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.17■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms