Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC27.31■■□□□ 1.96
VRK3Q8IV63 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
VRK3Q8IV63 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
VRK3Q8IV63 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.29■■□□□ 1.96
VRK3Q8IV63 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
VRK3Q8IV63 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
VRK3Q8IV63 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
VRK3Q8IV63 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
VRK3Q8IV63 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.26■■□□□ 1.95
VRK3Q8IV63 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC27.26■■□□□ 1.95
VRK3Q8IV63 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC27.25■■□□□ 1.95
VRK3Q8IV63 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
VRK3Q8IV63 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
VRK3Q8IV63 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
VRK3Q8IV63 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC27.24■■□□□ 1.95
VRK3Q8IV63 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC27.23■■□□□ 1.95
VRK3Q8IV63 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC27.22■■□□□ 1.95
VRK3Q8IV63 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
VRK3Q8IV63 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
VRK3Q8IV63 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC27.21■■□□□ 1.95
VRK3Q8IV63 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
VRK3Q8IV63 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
VRK3Q8IV63 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC27.19■■□□□ 1.94
VRK3Q8IV63 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
VRK3Q8IV63 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC27.18■■□□□ 1.94
VRK3Q8IV63 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
VRK3Q8IV63 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC27.17■■□□□ 1.94
VRK3Q8IV63 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
VRK3Q8IV63 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC27.15■■□□□ 1.94
VRK3Q8IV63 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.13■■□□□ 1.93
VRK3Q8IV63 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC27.12■■□□□ 1.93
VRK3Q8IV63 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
VRK3Q8IV63 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
VRK3Q8IV63 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
VRK3Q8IV63 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC27.07■■□□□ 1.92
VRK3Q8IV63 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
VRK3Q8IV63 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.06■■□□□ 1.92
VRK3Q8IV63 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC27.06■■□□□ 1.92
VRK3Q8IV63 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
VRK3Q8IV63 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC27.05■■□□□ 1.92
VRK3Q8IV63 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
VRK3Q8IV63 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC27.04■■□□□ 1.92
VRK3Q8IV63 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC27.02■■□□□ 1.92
VRK3Q8IV63 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
VRK3Q8IV63 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
VRK3Q8IV63 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
VRK3Q8IV63 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.98■■□□□ 1.91
VRK3Q8IV63 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
VRK3Q8IV63 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
VRK3Q8IV63 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
VRK3Q8IV63 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.95■■□□□ 1.9
VRK3Q8IV63 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VRK3Q8IV63 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
VRK3Q8IV63 AC120057.4-201ENST00000624722 1615 ntBASIC26.94■■□□□ 1.9
VRK3Q8IV63 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.94■■□□□ 1.9
VRK3Q8IV63 RARRES2P7-201ENST00000567349 469 ntBASIC26.94■■□□□ 1.9
VRK3Q8IV63 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
VRK3Q8IV63 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
VRK3Q8IV63 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
VRK3Q8IV63 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
VRK3Q8IV63 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
VRK3Q8IV63 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
VRK3Q8IV63 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
VRK3Q8IV63 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
VRK3Q8IV63 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.89■■□□□ 1.9
VRK3Q8IV63 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
VRK3Q8IV63 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
VRK3Q8IV63 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
VRK3Q8IV63 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
VRK3Q8IV63 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
VRK3Q8IV63 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
VRK3Q8IV63 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
VRK3Q8IV63 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
VRK3Q8IV63 AL133380.1-201ENST00000506013 324 ntBASIC26.83■■□□□ 1.89
VRK3Q8IV63 SETD8P1-201ENST00000623146 1180 ntBASIC26.83■■□□□ 1.89
VRK3Q8IV63 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
VRK3Q8IV63 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
VRK3Q8IV63 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
VRK3Q8IV63 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
VRK3Q8IV63 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
VRK3Q8IV63 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
VRK3Q8IV63 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.78■■□□□ 1.88
VRK3Q8IV63 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
VRK3Q8IV63 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
VRK3Q8IV63 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
VRK3Q8IV63 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
VRK3Q8IV63 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
VRK3Q8IV63 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.74■■□□□ 1.87
VRK3Q8IV63 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
VRK3Q8IV63 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.73■■□□□ 1.87
VRK3Q8IV63 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
VRK3Q8IV63 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
VRK3Q8IV63 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.7■■□□□ 1.86
VRK3Q8IV63 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
VRK3Q8IV63 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
VRK3Q8IV63 AC136428.2-201ENST00000563187 214 ntBASIC26.69■■□□□ 1.86
VRK3Q8IV63 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.68■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms