RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 NISCHQ9Y2I1 1504 aa67.59■■■■■ 8.41
ATPAF1-201ENST00000329231 CCDC180Q9P1Z9 1646 aa60.21■■■■■ 7.23
ATPAF1-201ENST00000329231 ABCC9O60706 1549 aa59.31■■■■■ 7.09
ATPAF1-201ENST00000329231 RB1CC1Q8TDY2 1594 aa56.9■■■■■ 6.7
ATPAF1-201ENST00000329231 NACADO15069 1562 aa56.76■■■■■ 6.68
ATPAF1-201ENST00000329231 DCAF8L2P0C7V8 631 aa56.7■■■■■ 6.67
ATPAF1-201ENST00000329231 MYO15BQ96JP2 1530 aa56.3■■■■■ 6.6
ATPAF1-201ENST00000329231 ZCCHC6Q5VYS8 1495 aaKnown RBP56.21■■■■■ 6.59
ATPAF1-201ENST00000329231 DCAF1Q9Y4B6 1507 aa55.91■■■■■ 6.54
ATPAF1-201ENST00000329231 UNC13AQ9UPW8 1703 aa55.49■■■■■ 6.47
ATPAF1-201ENST00000329231 PABPN1Q86U42 306 aaKnown RBP eCLIP55.4■■■■■ 6.46
ATPAF1-201ENST00000329231 BICRAQ9NZM4 1560 aa55.14■■■■■ 6.42
ATPAF1-201ENST00000329231 SCRIBQ14160 1630 aa54.92■■■■■ 6.38
ATPAF1-201ENST00000329231 DNAJC5BQ9UF47 199 aa54.78■■■■■ 6.36
ATPAF1-201ENST00000329231 SHROOM4Q9ULL8 1493 aa54.6■■■■■ 6.33
ATPAF1-201ENST00000329231 EIF4G1Q04637 1599 aaKnown RBP53.74■■■■■ 6.19
ATPAF1-201ENST00000329231 CC2D2AQ9P2K1 1620 aa53.61■■■■■ 6.17
ATPAF1-201ENST00000329231 CECR2Q9BXF3 1484 aa53.36■■■■■ 6.13
ATPAF1-201ENST00000329231 SMARCA4P51532 1647 aa52.5■■■■■ 5.99
ATPAF1-201ENST00000329231 BAZ1AQ9NRL2 1556 aaPredicted RBP52.42■■■■■ 5.98
ATPAF1-201ENST00000329231 NCAPD3P42695 1498 aa52.38■■■■■ 5.98
ATPAF1-201ENST00000329231 ATAD2BQ9ULI0 1458 aa52.35■■■■■ 5.97
ATPAF1-201ENST00000329231 SMARCA2P51531 1590 aa52.27■■■■■ 5.96
ATPAF1-201ENST00000329231 HMGXB3Q12766 1538 aa52.07■■■■■ 5.93
ATPAF1-201ENST00000329231 MROH2BQ7Z745 1585 aa52.06■■■■■ 5.92
ATPAF1-201ENST00000329231 PEG3Q9GZU2 1588 aa52■■■■■ 5.91
ATPAF1-201ENST00000329231 BAZ1BQ9UIG0 1483 aaKnown RBP51.91■■■■■ 5.9
ATPAF1-201ENST00000329231 WIZO95785 1651 aa51.46■■■■■ 5.83
ATPAF1-201ENST00000329231 RSF1Q96T23 1441 aaPredicted RBP51.37■■■■■ 5.81
ATPAF1-201ENST00000329231 NESP48681 1621 aa51.2■■■■■ 5.79
ATPAF1-201ENST00000329231 ERCC6Q03468 1493 aa51.19■■■■■ 5.79
ATPAF1-201ENST00000329231 LAMC3Q9Y6N6 1575 aa51.04■■■■■ 5.76
ATPAF1-201ENST00000329231 TOP2AP11388 1531 aaKnown RBP50.92■■■■■ 5.74
ATPAF1-201ENST00000329231 CADPSQ9ULU8 1353 aa50.86■■■■■ 5.73
ATPAF1-201ENST00000329231 CUX2O14529 1486 aa50.78■■■■■ 5.72
ATPAF1-201ENST00000329231 PDS5BQ9NTI5 1447 aa50.77■■■■■ 5.72
ATPAF1-201ENST00000329231 KIF21AQ7Z4S6 1674 aa50.53■■■■■ 5.68
ATPAF1-201ENST00000329231 THOC2Q8NI27 1593 aaKnown RBP50.47■■■■■ 5.67
ATPAF1-201ENST00000329231 CFTRP13569 1480 aa50.46■■■■■ 5.67
ATPAF1-201ENST00000329231 CCDC88BA6NC98 1476 aa50.34■■■■■ 5.65
ATPAF1-201ENST00000329231 FANCD2Q9BXW9 1451 aa50.26■■■■■ 5.64
ATPAF1-201ENST00000329231 MRC2Q9UBG0 1479 aa50.22■■■■■ 5.63
ATPAF1-201ENST00000329231 CEP164Q9UPV0 1460 aa50.22■■■■■ 5.63
ATPAF1-201ENST00000329231 WDR62O43379 1518 aa50.05■■■■■ 5.6
ATPAF1-201ENST00000329231 PRDM2Q13029 1718 aa49.94■■■■■ 5.59
ATPAF1-201ENST00000329231 SUPT5HO00267 1087 aaKnown RBP49.83■■■■■ 5.57
ATPAF1-201ENST00000329231 URB2Q14146 1524 aaKnown RBP49.75■■■■■ 5.55
ATPAF1-201ENST00000329231 DNAJC5Q9H3Z4 198 aa49.68■■■■■ 5.54
ATPAF1-201ENST00000329231 ABCC8Q09428 1581 aa49.41■■■■■ 5.5
ATPAF1-201ENST00000329231 TOPBP1Q92547 1522 aa49.39■■■■■ 5.5
ATPAF1-201ENST00000329231 DNMBPQ6XZF7 1577 aa49.29■■■■■ 5.48
ATPAF1-201ENST00000329231 IFT140Q96RY7 1462 aa49.2■■■■■ 5.47
ATPAF1-201ENST00000329231 ZNF608Q9ULD9 1512 aaPredicted RBP48.97■■■■■ 5.43
ATPAF1-201ENST00000329231 POLA1P09884 1462 aaPredicted RBP48.94■■■■■ 5.43
ATPAF1-201ENST00000329231 CUX1P39880 1505 aa48.87■■■■■ 5.41
ATPAF1-201ENST00000329231 TARBP1Q13395 1621 aaKnown RBP48.84■■■■■ 5.41
ATPAF1-201ENST00000329231 SOGA1O94964 1423 aa48.78■■■■■ 5.4
ATPAF1-201ENST00000329231 FGD5Q6ZNL6 1462 aa48.78■■■■■ 5.4
ATPAF1-201ENST00000329231 RAD54L2Q9Y4B4 1467 aa48.74■■■■■ 5.39
ATPAF1-201ENST00000329231 EIF4G3O43432 1585 aaKnown RBP48.74■■■■■ 5.39
ATPAF1-201ENST00000329231 AQRO60306 1485 aaKnown RBP eCLIP48.67■■■■■ 5.38
ATPAF1-201ENST00000329231 OSCARQ8IYS5 282 aa48.66■■■■■ 5.38
ATPAF1-201ENST00000329231 TDRD9Q8NDG6 1382 aaKnown RBP48.54■■■■■ 5.36
ATPAF1-201ENST00000329231 WDR97A6NE52 1622 aa48.47■■■■■ 5.35
ATPAF1-201ENST00000329231 WRNQ14191 1432 aaPredicted RBP eCLIP48.46■■■■■ 5.35
ATPAF1-201ENST00000329231 TOP2BQ02880 1626 aa48.35■■■■■ 5.33
ATPAF1-201ENST00000329231 BIVM-ERCC5R4GMW8 1640 aa48.32■■■■■ 5.33
ATPAF1-201ENST00000329231 ABCA10Q8WWZ4 1543 aa48.3■■■■■ 5.32
ATPAF1-201ENST00000329231 SYNJ1O43426 1573 aa48.3■■■■■ 5.32
ATPAF1-201ENST00000329231 GRIN2BQ13224 1484 aa48.24■■■■■ 5.31
ATPAF1-201ENST00000329231 FBLN2P98095 1184 aa48.22■■■■■ 5.31
ATPAF1-201ENST00000329231 SNAPC4Q5SXM2 1469 aa48.21■■■■■ 5.31
ATPAF1-201ENST00000329231 GAPVD1Q14C86 1478 aa48.2■■■■■ 5.31
ATPAF1-201ENST00000329231 CHD1O14646 1710 aa48.16■■■■■ 5.3
ATPAF1-201ENST00000329231 MAGI1Q96QZ7 1491 aaPredicted RBP48.16■■■■■ 5.3
ATPAF1-201ENST00000329231 ABCA5Q8WWZ7 1642 aa48.09■■■■■ 5.29
ATPAF1-201ENST00000329231 CHMP7Q8WUX9 453 aaPredicted RBP48.04■■■■■ 5.28
ATPAF1-201ENST00000329231 PBRM1Q86U86 1689 aa48.03■■■■■ 5.28
ATPAF1-201ENST00000329231 SYNJ2O15056 1496 aa47.97■■■■■ 5.27
ATPAF1-201ENST00000329231 TRIM41Q8WV44 630 aa47.89■■■■■ 5.26
ATPAF1-201ENST00000329231 RIMBP3CA6NJZ7 1639 aa47.81■■■■■ 5.24
ATPAF1-201ENST00000329231 RIMBP3BA6NNM3 1639 aa47.81■■■■■ 5.24
ATPAF1-201ENST00000329231 RIMBP3Q9UFD9 1639 aa47.81■■■■■ 5.24
ATPAF1-201ENST00000329231 ARHGEF11O15085 1522 aa47.8■■■■■ 5.24
ATPAF1-201ENST00000329231 ERICH3Q5RHP9 1530 aa47.71■■■■■ 5.23
ATPAF1-201ENST00000329231 CLASP1Q7Z460 1538 aa47.68■■■■■ 5.22
ATPAF1-201ENST00000329231 ADAMTS12P58397 1594 aa47.66■■■■■ 5.22
ATPAF1-201ENST00000329231 FHAD1B1AJZ9 1412 aa47.64■■■■■ 5.22
ATPAF1-201ENST00000329231 GRIN2AQ12879 1464 aa47.6■■■■■ 5.21
ATPAF1-201ENST00000329231 KIF27Q86VH2 1401 aa47.5■■■■■ 5.19
ATPAF1-201ENST00000329231 CYB5RLQ6IPT4 315 aa47.43■■■■■ 5.18
ATPAF1-201ENST00000329231 NUP160Q12769 1436 aa47.41■■■■■ 5.18
ATPAF1-201ENST00000329231 ARAP1Q96P48 1450 aa47.38■■■■■ 5.17
ATPAF1-201ENST00000329231 CEP170Q5SW79 1584 aa47.35■■■■■ 5.17
ATPAF1-201ENST00000329231 IGF1RP08069 1367 aa47.35■■■■■ 5.17
ATPAF1-201ENST00000329231 CUL7Q14999 1698 aa47.19■■■■■ 5.14
ATPAF1-201ENST00000329231 CARMIL1Q5VZK9 1371 aa47.07■■■■■ 5.13
ATPAF1-201ENST00000329231 SHROOM2Q13796 1616 aa47.05■■■■■ 5.12
ATPAF1-201ENST00000329231 JPH4Q96JJ6 628 aa46.98■■■■■ 5.11
ATPAF1-201ENST00000329231 ERCC6L2Q5T890 1561 aa46.97■■■■■ 5.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms