Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.5■■■□□ 2.95
VRK3Q8IV63 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
VRK3Q8IV63 AL356512.1-201ENST00000607453 1739 ntBASIC32.68■■■□□ 2.82
VRK3Q8IV63 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.62■■■□□ 2.81
VRK3Q8IV63 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
VRK3Q8IV63 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
VRK3Q8IV63 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.18■■■□□ 2.74
VRK3Q8IV63 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32■■■□□ 2.71
VRK3Q8IV63 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC31.96■■■□□ 2.71
VRK3Q8IV63 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.84■■■□□ 2.69
VRK3Q8IV63 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.77■■■□□ 2.68
VRK3Q8IV63 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.64■■■□□ 2.66
VRK3Q8IV63 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC31.37■■■□□ 2.61
VRK3Q8IV63 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.3■■■□□ 2.6
VRK3Q8IV63 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
VRK3Q8IV63 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.01■■■□□ 2.55
VRK3Q8IV63 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
VRK3Q8IV63 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC30.84■■■□□ 2.53
VRK3Q8IV63 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
VRK3Q8IV63 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC30.8■■■□□ 2.52
VRK3Q8IV63 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
VRK3Q8IV63 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
VRK3Q8IV63 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.59■■■□□ 2.49
VRK3Q8IV63 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC30.53■■■□□ 2.48
VRK3Q8IV63 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.43■■■□□ 2.46
VRK3Q8IV63 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
VRK3Q8IV63 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
VRK3Q8IV63 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
VRK3Q8IV63 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
VRK3Q8IV63 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
VRK3Q8IV63 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.06■■■□□ 2.4
VRK3Q8IV63 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
VRK3Q8IV63 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC29.96■■■□□ 2.39
VRK3Q8IV63 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
VRK3Q8IV63 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
VRK3Q8IV63 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
VRK3Q8IV63 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
VRK3Q8IV63 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.89■■■□□ 2.37
VRK3Q8IV63 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
VRK3Q8IV63 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
VRK3Q8IV63 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
VRK3Q8IV63 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
VRK3Q8IV63 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
VRK3Q8IV63 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
VRK3Q8IV63 INO80B-203ENST00000409917 796 ntTSL 2 BASIC29.67■■■□□ 2.34
VRK3Q8IV63 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC29.67■■■□□ 2.34
VRK3Q8IV63 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
VRK3Q8IV63 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
VRK3Q8IV63 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.54■■■□□ 2.32
VRK3Q8IV63 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.52■■■□□ 2.32
VRK3Q8IV63 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
VRK3Q8IV63 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
VRK3Q8IV63 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.45■■■□□ 2.31
VRK3Q8IV63 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
VRK3Q8IV63 AC015813.7-201ENST00000623294 581 ntBASIC29.32■■■□□ 2.28
VRK3Q8IV63 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
VRK3Q8IV63 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.16■■■□□ 2.26
VRK3Q8IV63 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
VRK3Q8IV63 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
VRK3Q8IV63 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
VRK3Q8IV63 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
VRK3Q8IV63 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.08■■■□□ 2.25
VRK3Q8IV63 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.07■■■□□ 2.24
VRK3Q8IV63 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
VRK3Q8IV63 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.98■■■□□ 2.23
VRK3Q8IV63 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
VRK3Q8IV63 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC28.97■■■□□ 2.23
VRK3Q8IV63 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
VRK3Q8IV63 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC28.95■■■□□ 2.22
VRK3Q8IV63 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.95■■■□□ 2.22
VRK3Q8IV63 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
VRK3Q8IV63 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC28.94■■■□□ 2.22
VRK3Q8IV63 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
VRK3Q8IV63 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC28.9■■■□□ 2.22
VRK3Q8IV63 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC28.88■■■□□ 2.21
VRK3Q8IV63 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
VRK3Q8IV63 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
VRK3Q8IV63 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
VRK3Q8IV63 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.83■■■□□ 2.21
VRK3Q8IV63 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
VRK3Q8IV63 AC006077.2-201ENST00000623591 457 ntBASIC28.75■■■□□ 2.19
VRK3Q8IV63 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
VRK3Q8IV63 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
VRK3Q8IV63 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.17
VRK3Q8IV63 ZNRF2P1-201ENST00000441407 443 ntBASIC28.61■■■□□ 2.17
VRK3Q8IV63 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
VRK3Q8IV63 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
VRK3Q8IV63 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
VRK3Q8IV63 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
VRK3Q8IV63 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
VRK3Q8IV63 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
VRK3Q8IV63 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
VRK3Q8IV63 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
VRK3Q8IV63 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
VRK3Q8IV63 AC145285.7-201ENST00000614819 1539 ntBASIC28.46■■■□□ 2.15
VRK3Q8IV63 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC28.45■■■□□ 2.14
VRK3Q8IV63 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
VRK3Q8IV63 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
VRK3Q8IV63 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.39■■■□□ 2.13
VRK3Q8IV63 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC28.33■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms