Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AL031258.1-201ENST00000623562 325 ntBASIC32.29■■■□□ 2.76
KRT40Q6A162 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
KRT40Q6A162 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
KRT40Q6A162 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
KRT40Q6A162 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
KRT40Q6A162 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.26■■■□□ 2.75
KRT40Q6A162 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC32.24■■■□□ 2.75
KRT40Q6A162 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.24■■■□□ 2.75
KRT40Q6A162 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
KRT40Q6A162 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC32.22■■■□□ 2.75
KRT40Q6A162 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC32.22■■■□□ 2.75
KRT40Q6A162 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.21■■■□□ 2.75
KRT40Q6A162 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.18■■■□□ 2.74
KRT40Q6A162 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
KRT40Q6A162 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
KRT40Q6A162 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
KRT40Q6A162 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.12■■■□□ 2.73
KRT40Q6A162 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.12■■■□□ 2.73
KRT40Q6A162 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.12■■■□□ 2.73
KRT40Q6A162 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC32.11■■■□□ 2.73
KRT40Q6A162 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
KRT40Q6A162 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
KRT40Q6A162 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
KRT40Q6A162 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.07■■■□□ 2.72
KRT40Q6A162 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
KRT40Q6A162 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
KRT40Q6A162 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.01■■■□□ 2.71
KRT40Q6A162 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
KRT40Q6A162 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.71
KRT40Q6A162 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32■■■□□ 2.71
KRT40Q6A162 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
KRT40Q6A162 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32■■■□□ 2.71
KRT40Q6A162 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32■■■□□ 2.71
KRT40Q6A162 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
KRT40Q6A162 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.99■■■□□ 2.71
KRT40Q6A162 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.98■■■□□ 2.71
KRT40Q6A162 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.97■■■□□ 2.71
KRT40Q6A162 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.97■■■□□ 2.71
KRT40Q6A162 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.96■■■□□ 2.71
KRT40Q6A162 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
KRT40Q6A162 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.93■■■□□ 2.7
KRT40Q6A162 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.93■■■□□ 2.7
KRT40Q6A162 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
KRT40Q6A162 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
KRT40Q6A162 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.9■■■□□ 2.7
KRT40Q6A162 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.89■■■□□ 2.7
KRT40Q6A162 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
KRT40Q6A162 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
KRT40Q6A162 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.88■■■□□ 2.69
KRT40Q6A162 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.88■■■□□ 2.69
KRT40Q6A162 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
KRT40Q6A162 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.86■■■□□ 2.69
KRT40Q6A162 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.86■■■□□ 2.69
KRT40Q6A162 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
KRT40Q6A162 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
KRT40Q6A162 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
KRT40Q6A162 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.85■■■□□ 2.69
KRT40Q6A162 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.85■■■□□ 2.69
KRT40Q6A162 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.85■■■□□ 2.69
KRT40Q6A162 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.84■■■□□ 2.69
KRT40Q6A162 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
KRT40Q6A162 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
KRT40Q6A162 AC120057.4-201ENST00000624722 1615 ntBASIC31.83■■■□□ 2.69
KRT40Q6A162 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.83■■■□□ 2.69
KRT40Q6A162 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.83■■■□□ 2.69
KRT40Q6A162 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.83■■■□□ 2.69
KRT40Q6A162 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
KRT40Q6A162 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
KRT40Q6A162 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
KRT40Q6A162 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
KRT40Q6A162 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.79■■■□□ 2.68
KRT40Q6A162 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
KRT40Q6A162 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.79■■■□□ 2.68
KRT40Q6A162 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
KRT40Q6A162 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.77■■■□□ 2.68
KRT40Q6A162 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.76■■■□□ 2.67
KRT40Q6A162 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
KRT40Q6A162 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
KRT40Q6A162 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
KRT40Q6A162 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
KRT40Q6A162 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
KRT40Q6A162 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
KRT40Q6A162 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.71■■■□□ 2.67
KRT40Q6A162 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
KRT40Q6A162 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.71■■■□□ 2.67
KRT40Q6A162 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.71■■■□□ 2.67
KRT40Q6A162 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
KRT40Q6A162 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.66
KRT40Q6A162 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
KRT40Q6A162 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.69■■■□□ 2.66
KRT40Q6A162 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
KRT40Q6A162 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
KRT40Q6A162 RARRES2P7-201ENST00000567349 469 ntBASIC31.66■■■□□ 2.66
KRT40Q6A162 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.64■■■□□ 2.66
KRT40Q6A162 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
KRT40Q6A162 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
KRT40Q6A162 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
KRT40Q6A162 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
KRT40Q6A162 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.58■■■□□ 2.65
KRT40Q6A162 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms