Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.92■■□□□ 1.9
HNF4AP41235 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
HNF4AP41235 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
HNF4AP41235 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
HNF4AP41235 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.88■■□□□ 1.89
HNF4AP41235 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
HNF4AP41235 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.85■■□□□ 1.89
HNF4AP41235 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
HNF4AP41235 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
HNF4AP41235 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
HNF4AP41235 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
HNF4AP41235 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.81■■□□□ 1.88
HNF4AP41235 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
HNF4AP41235 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
HNF4AP41235 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
HNF4AP41235 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
HNF4AP41235 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
HNF4AP41235 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
HNF4AP41235 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HNF4AP41235 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.76■■□□□ 1.87
HNF4AP41235 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
HNF4AP41235 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.74■■□□□ 1.87
HNF4AP41235 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.72■■□□□ 1.87
HNF4AP41235 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
HNF4AP41235 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
HNF4AP41235 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.7■■□□□ 1.87
HNF4AP41235 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.68■■□□□ 1.86
HNF4AP41235 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HNF4AP41235 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
HNF4AP41235 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.67■■□□□ 1.86
HNF4AP41235 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.67■■□□□ 1.86
HNF4AP41235 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
HNF4AP41235 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.65■■□□□ 1.86
HNF4AP41235 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
HNF4AP41235 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
HNF4AP41235 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
HNF4AP41235 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HNF4AP41235 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.62■■□□□ 1.85
HNF4AP41235 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
HNF4AP41235 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
HNF4AP41235 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
HNF4AP41235 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
HNF4AP41235 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HNF4AP41235 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
HNF4AP41235 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HNF4AP41235 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.57■■□□□ 1.84
HNF4AP41235 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HNF4AP41235 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.56■■□□□ 1.84
HNF4AP41235 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.56■■□□□ 1.84
HNF4AP41235 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HNF4AP41235 AC120057.4-201ENST00000624722 1615 ntBASIC26.55■■□□□ 1.84
HNF4AP41235 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HNF4AP41235 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HNF4AP41235 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HNF4AP41235 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.54■■□□□ 1.84
HNF4AP41235 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.54■■□□□ 1.84
HNF4AP41235 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HNF4AP41235 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.54■■□□□ 1.84
HNF4AP41235 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
HNF4AP41235 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HNF4AP41235 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.53■■□□□ 1.84
HNF4AP41235 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.52■■□□□ 1.84
HNF4AP41235 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
HNF4AP41235 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
HNF4AP41235 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HNF4AP41235 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HNF4AP41235 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.47■■□□□ 1.83
HNF4AP41235 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.47■■□□□ 1.83
HNF4AP41235 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.47■■□□□ 1.83
HNF4AP41235 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
HNF4AP41235 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
HNF4AP41235 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.45■■□□□ 1.82
HNF4AP41235 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.45■■□□□ 1.82
HNF4AP41235 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HNF4AP41235 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.44■■□□□ 1.82
HNF4AP41235 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HNF4AP41235 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
HNF4AP41235 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
HNF4AP41235 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
HNF4AP41235 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.4■■□□□ 1.82
HNF4AP41235 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
HNF4AP41235 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.38■■□□□ 1.81
HNF4AP41235 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
HNF4AP41235 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.35■■□□□ 1.81
HNF4AP41235 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.35■■□□□ 1.81
HNF4AP41235 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HNF4AP41235 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.35■■□□□ 1.81
HNF4AP41235 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HNF4AP41235 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
HNF4AP41235 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HNF4AP41235 RARRES2P7-201ENST00000567349 469 ntBASIC26.29■■□□□ 1.8
HNF4AP41235 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HNF4AP41235 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HNF4AP41235 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
HNF4AP41235 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
HNF4AP41235 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
HNF4AP41235 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HNF4AP41235 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
HNF4AP41235 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.26■■□□□ 1.79
HNF4AP41235 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms