Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 TP53-221ENST00000615910 1149 ntTSL 5 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 AC073911.3-201ENST00000624401 631 ntBASIC12.97□□□□□ -0.33
LRFN1Q9P244 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LRFN1Q9P244 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
LRFN1Q9P244 DMBT1P1-203ENST00000636837 4628 ntBASIC12.97□□□□□ -0.33
LRFN1Q9P244 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 AL031595.1-201ENST00000623969 4709 ntBASIC12.96□□□□□ -0.33
LRFN1Q9P244 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 SHMT1P1-201ENST00000419974 1312 ntBASIC12.96□□□□□ -0.33
LRFN1Q9P244 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 PFN2-202ENST00000423691 911 ntTSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 PPP1R2P4-201ENST00000424051 595 ntBASIC12.96□□□□□ -0.33
LRFN1Q9P244 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 CR383656.3-201ENST00000551315 183 ntBASIC12.96□□□□□ -0.33
LRFN1Q9P244 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC12.96□□□□□ -0.33
LRFN1Q9P244 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
LRFN1Q9P244 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LRFN1Q9P244 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LRFN1Q9P244 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.96□□□□□ -0.34
LRFN1Q9P244 LINC00552-201ENST00000625151 2579 ntBASIC12.96□□□□□ -0.34
LRFN1Q9P244 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LRFN1Q9P244 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LRFN1Q9P244 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LRFN1Q9P244 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.96□□□□□ -0.34
LRFN1Q9P244 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.96□□□□□ -0.34
LRFN1Q9P244 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LRFN1Q9P244 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LRFN1Q9P244 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LRFN1Q9P244 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LRFN1Q9P244 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LRFN1Q9P244 TUBB8P4-201ENST00000511806 1324 ntBASIC12.95□□□□□ -0.34
LRFN1Q9P244 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LRFN1Q9P244 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC12.95□□□□□ -0.34
LRFN1Q9P244 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LRFN1Q9P244 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms