RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 NISCHQ9Y2I1 1504 aa31.38■■■□□ 2.61
VIPAS39-202ENST00000343765 SHROOM4Q9ULL8 1493 aa26.76■■□□□ 1.87
VIPAS39-202ENST00000343765 CCDC180Q9P1Z9 1646 aa26.72■■□□□ 1.87
VIPAS39-202ENST00000343765 ZCCHC6Q5VYS8 1495 aaKnown RBP26.5■■□□□ 1.83
VIPAS39-202ENST00000343765 DCAF8L2P0C7V8 631 aa26.26■■□□□ 1.79
VIPAS39-202ENST00000343765 SUPT5HO00267 1087 aaKnown RBP26.13■■□□□ 1.77
VIPAS39-202ENST00000343765 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
VIPAS39-202ENST00000343765 CHIC1Q5VXU3 224 aa25.22■■□□□ 1.63
VIPAS39-202ENST00000343765 SCRIBQ14160 1630 aa25.13■■□□□ 1.61
VIPAS39-202ENST00000343765 MYO15BQ96JP2 1530 aa25.08■■□□□ 1.61
VIPAS39-202ENST00000343765 ABCC9O60706 1549 aa25.08■■□□□ 1.6
VIPAS39-202ENST00000343765 NACADO15069 1562 aa24.79■■□□□ 1.56
VIPAS39-202ENST00000343765 RSF1Q96T23 1441 aaPredicted RBP24.78■■□□□ 1.56
VIPAS39-202ENST00000343765 CECR2Q9BXF3 1484 aa24.54■■□□□ 1.52
VIPAS39-202ENST00000343765 LOC105371045A0A1W2PR82 267 aa24.52■■□□□ 1.52
VIPAS39-202ENST00000343765 RB1CC1Q8TDY2 1594 aa24.51■■□□□ 1.51
VIPAS39-202ENST00000343765 MROH2BQ7Z745 1585 aa24.42■■□□□ 1.5
VIPAS39-202ENST00000343765 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
VIPAS39-202ENST00000343765 PCGF6Q9BYE7 350 aa24.29■■□□□ 1.48
VIPAS39-202ENST00000343765 WIZO95785 1651 aa24.28■■□□□ 1.48
VIPAS39-202ENST00000343765 FAM9AQ8IZU1 332 aaPredicted RBP24.18■■□□□ 1.46
VIPAS39-202ENST00000343765 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
VIPAS39-202ENST00000343765 HRCP23327 699 aa24.08■■□□□ 1.44
VIPAS39-202ENST00000343765 EHMT2Q96KQ7 1210 aa24.07■■□□□ 1.44
VIPAS39-202ENST00000343765 UNC13AQ9UPW8 1703 aa24.05■■□□□ 1.44
VIPAS39-202ENST00000343765 PABPN1Q86U42 306 aaKnown RBP eCLIP24.04■■□□□ 1.44
VIPAS39-202ENST00000343765 SMARCA4P51532 1647 aa23.95■■□□□ 1.42
VIPAS39-202ENST00000343765 TOP2AP11388 1531 aaKnown RBP23.87■■□□□ 1.41
VIPAS39-202ENST00000343765 TRIM26Q12899 539 aaPredicted RBP23.81■■□□□ 1.4
VIPAS39-202ENST00000343765 EIF4G1Q04637 1599 aaKnown RBP23.79■■□□□ 1.4
VIPAS39-202ENST00000343765 CCDC88BA6NC98 1476 aa23.79■■□□□ 1.4
VIPAS39-202ENST00000343765 BICRAQ9NZM4 1560 aa23.79■■□□□ 1.4
VIPAS39-202ENST00000343765 SMARCA2P51531 1590 aa23.73■■□□□ 1.39
VIPAS39-202ENST00000343765 PPARGC1BQ86YN6 1023 aaKnown RBP23.69■■□□□ 1.38
VIPAS39-202ENST00000343765 ABCC8Q09428 1581 aa23.69■■□□□ 1.38
VIPAS39-202ENST00000343765 PEG3Q9GZU2 1588 aa23.44■■□□□ 1.34
VIPAS39-202ENST00000343765 SOGA1O94964 1423 aa23.43■■□□□ 1.34
VIPAS39-202ENST00000343765 ATAD2BQ9ULI0 1458 aa23.4■■□□□ 1.34
VIPAS39-202ENST00000343765 BAZ1BQ9UIG0 1483 aaKnown RBP23.35■■□□□ 1.33
VIPAS39-202ENST00000343765 RUSC2Q8N2Y8 1516 aa23.32■■□□□ 1.32
VIPAS39-202ENST00000343765 WRNQ14191 1432 aaPredicted RBP eCLIP23.3■■□□□ 1.32
VIPAS39-202ENST00000343765 CSRNP3Q8WYN3 585 aa23.27■■□□□ 1.32
VIPAS39-202ENST00000343765 UBTFP17480 764 aaKnown RBP23.23■■□□□ 1.31
VIPAS39-202ENST00000343765 CEP162Q5TB80 1403 aa23.21■■□□□ 1.31
VIPAS39-202ENST00000343765 TTBK1Q5TCY1 1321 aaPredicted RBP23.21■■□□□ 1.31
VIPAS39-202ENST00000343765 EEA1Q15075 1411 aa23.2■■□□□ 1.3
VIPAS39-202ENST00000343765 SYNJ1O43426 1573 aa23.18■■□□□ 1.3
VIPAS39-202ENST00000343765 ZEB1P37275 1124 aaPredicted RBP23.15■■□□□ 1.3
VIPAS39-202ENST00000343765 TNIKQ9UKE5 1360 aa23.15■■□□□ 1.3
VIPAS39-202ENST00000343765 GOLGA3Q08378 1498 aa23.08■■□□□ 1.29
VIPAS39-202ENST00000343765 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.98■■□□□ 1.27
VIPAS39-202ENST00000343765 CEP164Q9UPV0 1460 aa22.96■■□□□ 1.27
VIPAS39-202ENST00000343765 NCAPD3P42695 1498 aa22.95■■□□□ 1.26
VIPAS39-202ENST00000343765 HMGXB3Q12766 1538 aa22.92■■□□□ 1.26
VIPAS39-202ENST00000343765 RANGAP1P46060 587 aaPredicted RBP22.9■■□□□ 1.26
VIPAS39-202ENST00000343765 CCER1Q8TC90 406 aaPredicted RBP22.9■■□□□ 1.26
VIPAS39-202ENST00000343765 KIF21BO75037 1637 aa22.89■■□□□ 1.26
VIPAS39-202ENST00000343765 TOP2BQ02880 1626 aa22.88■■□□□ 1.25
VIPAS39-202ENST00000343765 RAPGEF2Q9Y4G8 1499 aa22.86■■□□□ 1.25
VIPAS39-202ENST00000343765 CLIP1P30622 1438 aa22.84■■□□□ 1.25
VIPAS39-202ENST00000343765 BIVM-ERCC5R4GMW8 1640 aa22.78■■□□□ 1.24
VIPAS39-202ENST00000343765 CUX1P39880 1505 aa22.74■■□□□ 1.23
VIPAS39-202ENST00000343765 CFTRP13569 1480 aa22.72■■□□□ 1.23
VIPAS39-202ENST00000343765 VPS8Q8N3P4 1428 aa22.68■■□□□ 1.22
VIPAS39-202ENST00000343765 APLP2Q06481 763 aa22.64■■□□□ 1.22
VIPAS39-202ENST00000343765 PRXQ9BXM0 1461 aa22.61■■□□□ 1.21
VIPAS39-202ENST00000343765 KIF27Q86VH2 1401 aa22.6■■□□□ 1.21
VIPAS39-202ENST00000343765 HNRNPUL2Q1KMD3 747 aaKnown RBP22.6■■□□□ 1.21
VIPAS39-202ENST00000343765 ERICH3Q5RHP9 1530 aa22.56■■□□□ 1.2
VIPAS39-202ENST00000343765 CADPSQ9ULU8 1353 aa22.54■■□□□ 1.2
VIPAS39-202ENST00000343765 CC2D2AQ9P2K1 1620 aa22.52■■□□□ 1.2
VIPAS39-202ENST00000343765 ARAP1Q96P48 1450 aa22.47■■□□□ 1.19
VIPAS39-202ENST00000343765 PRDM2Q13029 1718 aa22.46■■□□□ 1.19
VIPAS39-202ENST00000343765 CUX2O14529 1486 aa22.46■■□□□ 1.19
VIPAS39-202ENST00000343765 FGD5Q6ZNL6 1462 aa22.39■■□□□ 1.17
VIPAS39-202ENST00000343765 DNAJC5BQ9UF47 199 aa22.38■■□□□ 1.17
VIPAS39-202ENST00000343765 KANK4Q5T7N3 995 aaPredicted RBP22.37■■□□□ 1.17
VIPAS39-202ENST00000343765 IGF1RP08069 1367 aa22.36■■□□□ 1.17
VIPAS39-202ENST00000343765 FANCD2Q9BXW9 1451 aa22.34■■□□□ 1.17
VIPAS39-202ENST00000343765 ARHGAP35Q9NRY4 1499 aa22.31■■□□□ 1.16
VIPAS39-202ENST00000343765 DIEXFQ68CQ4 756 aaKnown RBP22.29■■□□□ 1.16
VIPAS39-202ENST00000343765 CARMIL1Q5VZK9 1371 aa22.29■■□□□ 1.16
VIPAS39-202ENST00000343765 NESP48681 1621 aa22.28■■□□□ 1.16
VIPAS39-202ENST00000343765 RAD54L2Q9Y4B4 1467 aa22.21■■□□□ 1.15
VIPAS39-202ENST00000343765 DNMBPQ6XZF7 1577 aa22.16■■□□□ 1.14
VIPAS39-202ENST00000343765 ZNF316A6NFI3 1004 aaPredicted RBP22.16■■□□□ 1.14
VIPAS39-202ENST00000343765 TOPBP1Q92547 1522 aa22.15■■□□□ 1.14
VIPAS39-202ENST00000343765 P3H3Q8IVL6 736 aa22.15■■□□□ 1.14
VIPAS39-202ENST00000343765 POLA1P09884 1462 aaPredicted RBP22.14■■□□□ 1.14
VIPAS39-202ENST00000343765 ITGAEP38570 1179 aa22.12■■□□□ 1.13
VIPAS39-202ENST00000343765 RRBP1Q9P2E9 1410 aaKnown RBP22.09■■□□□ 1.13
VIPAS39-202ENST00000343765 ATP1B4Q9UN42 357 aaPredicted RBP22.08■■□□□ 1.12
VIPAS39-202ENST00000343765 ABCA10Q8WWZ4 1543 aa22.08■■□□□ 1.12
VIPAS39-202ENST00000343765 CCNB3Q8WWL7 1395 aa22.06■■□□□ 1.12
VIPAS39-202ENST00000343765 SCAF1Q9H7N4 1312 aaKnown RBP22.06■■□□□ 1.12
VIPAS39-202ENST00000343765 DHX57Q6P158 1386 aaKnown RBP22.03■■□□□ 1.12
VIPAS39-202ENST00000343765 URB2Q14146 1524 aaKnown RBP22.02■■□□□ 1.11
VIPAS39-202ENST00000343765 TIAM1Q13009 1591 aa22.01■■□□□ 1.11
VIPAS39-202ENST00000343765 LAMC3Q9Y6N6 1575 aa22■■□□□ 1.11
VIPAS39-202ENST00000343765 FHOD3Q2V2M9 1422 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms