RNA–Protein interactions for RNA: ENST00000343257.6

CLCN1-201, Transcript of chloride voltage-gated channel 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN1, Length 3,172 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1-201ENST00000343257 NISCHQ9Y2I1 1504 aa27.85■■■□□ 2.05
CLCN1-201ENST00000343257 SHROOM4Q9ULL8 1493 aa25.3■■□□□ 1.64
CLCN1-201ENST00000343257 SUPT5HO00267 1087 aaKnown RBP25.2■■□□□ 1.63
CLCN1-201ENST00000343257 HRCP23327 699 aa25.11■■□□□ 1.61
CLCN1-201ENST00000343257 PPARGC1BQ86YN6 1023 aaKnown RBP24.95■■□□□ 1.58
CLCN1-201ENST00000343257 PCGF6Q9BYE7 350 aa24.91■■□□□ 1.58
CLCN1-201ENST00000343257 MYO15BQ96JP2 1530 aa24.59■■□□□ 1.53
CLCN1-201ENST00000343257 CHIC1Q5VXU3 224 aa24.49■■□□□ 1.51
CLCN1-201ENST00000343257 LOC105371045A0A1W2PR82 267 aa24.17■■□□□ 1.46
CLCN1-201ENST00000343257 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
CLCN1-201ENST00000343257 PELP1Q8IZL8 1130 aaKnown RBP23.91■■□□□ 1.42
CLCN1-201ENST00000343257 SCAF1Q9H7N4 1312 aaKnown RBP23.85■■□□□ 1.41
CLCN1-201ENST00000343257 TRIM26Q12899 539 aaPredicted RBP23.85■■□□□ 1.41
CLCN1-201ENST00000343257 DCAF1Q9Y4B6 1507 aa23.77■■□□□ 1.4
CLCN1-201ENST00000343257 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
CLCN1-201ENST00000343257 EHMT2Q96KQ7 1210 aa23.56■■□□□ 1.36
CLCN1-201ENST00000343257 ZEB1P37275 1124 aaPredicted RBP23.5■■□□□ 1.35
CLCN1-201ENST00000343257 CCDC180Q9P1Z9 1646 aa23.42■■□□□ 1.34
CLCN1-201ENST00000343257 FAM9AQ8IZU1 332 aaPredicted RBP23.42■■□□□ 1.34
CLCN1-201ENST00000343257 NEUROD1Q13562 356 aa23.26■■□□□ 1.31
CLCN1-201ENST00000343257 ACIN1Q9UKV3 1341 aaKnown RBP23.2■■□□□ 1.31
CLCN1-201ENST00000343257 GTF3C3Q9Y5Q9 886 aa23.16■■□□□ 1.3
CLCN1-201ENST00000343257 TRIM41Q8WV44 630 aa23.12■■□□□ 1.29
CLCN1-201ENST00000343257 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.12■■□□□ 1.29
CLCN1-201ENST00000343257 CCER1Q8TC90 406 aaPredicted RBP23.01■■□□□ 1.27
CLCN1-201ENST00000343257 TTBK1Q5TCY1 1321 aaPredicted RBP22.94■■□□□ 1.26
CLCN1-201ENST00000343257 DIEXFQ68CQ4 756 aaKnown RBP22.92■■□□□ 1.26
CLCN1-201ENST00000343257 CENPBP07199 599 aaPredicted RBP22.91■■□□□ 1.26
CLCN1-201ENST00000343257 MYT1Q01538 1121 aa22.85■■□□□ 1.25
CLCN1-201ENST00000343257 YTHDC1Q96MU7 727 aaKnown RBP22.84■■□□□ 1.25
CLCN1-201ENST00000343257 RSF1Q96T23 1441 aaPredicted RBP22.54■■□□□ 1.2
CLCN1-201ENST00000343257 RB1CC1Q8TDY2 1594 aa22.46■■□□□ 1.19
CLCN1-201ENST00000343257 ZNF316A6NFI3 1004 aaPredicted RBP22.41■■□□□ 1.18
CLCN1-201ENST00000343257 ABCC9O60706 1549 aa22.41■■□□□ 1.18
CLCN1-201ENST00000343257 MIER1Q8N108 512 aa22.39■■□□□ 1.18
CLCN1-201ENST00000343257 SCRIBQ14160 1630 aa22.27■■□□□ 1.16
CLCN1-201ENST00000343257 HNRNPUL2Q1KMD3 747 aaKnown RBP22.18■■□□□ 1.14
CLCN1-201ENST00000343257 UBTFP17480 764 aaKnown RBP22.05■■□□□ 1.12
CLCN1-201ENST00000343257 CECR2Q9BXF3 1484 aa22.03■■□□□ 1.12
CLCN1-201ENST00000343257 CEP162Q5TB80 1403 aa21.98■■□□□ 1.11
CLCN1-201ENST00000343257 SUPT16HQ9Y5B9 1047 aaKnown RBP21.95■■□□□ 1.1
CLCN1-201ENST00000343257 MROH2BQ7Z745 1585 aa21.9■■□□□ 1.1
CLCN1-201ENST00000343257 RANGAP1P46060 587 aaPredicted RBP21.87■■□□□ 1.09
CLCN1-201ENST00000343257 WRNQ14191 1432 aaPredicted RBP eCLIP21.84■■□□□ 1.09
CLCN1-201ENST00000343257 TSHZ2Q9NRE2 1034 aa21.84■■□□□ 1.09
CLCN1-201ENST00000343257 CCDC88BA6NC98 1476 aa21.83■■□□□ 1.08
CLCN1-201ENST00000343257 BCANQ96GW7 911 aa21.82■■□□□ 1.08
CLCN1-201ENST00000343257 SOGA1O94964 1423 aa21.82■■□□□ 1.08
CLCN1-201ENST00000343257 WIZO95785 1651 aa21.82■■□□□ 1.08
CLCN1-201ENST00000343257 ABCC8Q09428 1581 aa21.81■■□□□ 1.08
CLCN1-201ENST00000343257 ANP32EQ9BTT0 268 aa21.8■■□□□ 1.08
CLCN1-201ENST00000343257 BCL11AQ9H165 835 aa21.8■■□□□ 1.08
CLCN1-201ENST00000343257 CSRNP3Q8WYN3 585 aa21.75■■□□□ 1.07
CLCN1-201ENST00000343257 TNIKQ9UKE5 1360 aa21.72■■□□□ 1.07
CLCN1-201ENST00000343257 RUSC2Q8N2Y8 1516 aa21.71■■□□□ 1.07
CLCN1-201ENST00000343257 KCNH8Q96L42 1107 aa21.64■■□□□ 1.05
CLCN1-201ENST00000343257 APLP2Q06481 763 aa21.63■■□□□ 1.05
CLCN1-201ENST00000343257 FKBP8Q14318 412 aa21.52■■□□□ 1.03
CLCN1-201ENST00000343257 CLSPNQ9HAW4 1339 aa21.51■■□□□ 1.03
CLCN1-201ENST00000343257 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
CLCN1-201ENST00000343257 GOLGA3Q08378 1498 aa21.45■■□□□ 1.02
CLCN1-201ENST00000343257 ITGAEP38570 1179 aa21.44■■□□□ 1.02
CLCN1-201ENST00000343257 BAZ1AQ9NRL2 1556 aaPredicted RBP21.44■■□□□ 1.02
CLCN1-201ENST00000343257 CLIP1P30622 1438 aa21.41■■□□□ 1.02
CLCN1-201ENST00000343257 DHX57Q6P158 1386 aaKnown RBP21.37■■□□□ 1.01
CLCN1-201ENST00000343257 RBM19Q9Y4C8 960 aaKnown RBP21.36■■□□□ 1.01
CLCN1-201ENST00000343257 EEA1Q15075 1411 aa21.31■■□□□ 1
CLCN1-201ENST00000343257 DDX10Q13206 875 aaKnown RBP21.29■■□□□ 1
CLCN1-201ENST00000343257 TRIM52Q96A61 297 aa21.28■■□□□ 1
CLCN1-201ENST00000343257 VPS8Q8N3P4 1428 aa21.28■■□□□ 1
CLCN1-201ENST00000343257 NEFLP07196 543 aa21.26■□□□□ 0.99
CLCN1-201ENST00000343257 HIRIP3Q9BW71 556 aaPredicted RBP21.25■□□□□ 0.99
CLCN1-201ENST00000343257 NACADO15069 1562 aa21.25■□□□□ 0.99
CLCN1-201ENST00000343257 KANK4Q5T7N3 995 aaPredicted RBP21.24■□□□□ 0.99
CLCN1-201ENST00000343257 SMARCA2P51531 1590 aa21.22■□□□□ 0.99
CLCN1-201ENST00000343257 TOP2AP11388 1531 aaKnown RBP21.22■□□□□ 0.99
CLCN1-201ENST00000343257 CEP164Q9UPV0 1460 aa21.2■□□□□ 0.98
CLCN1-201ENST00000343257 MSH5O43196 834 aa21.18■□□□□ 0.98
CLCN1-201ENST00000343257 RAPGEF2Q9Y4G8 1499 aa21.15■□□□□ 0.98
CLCN1-201ENST00000343257 IRX6P78412 446 aaPredicted RBP21.13■□□□□ 0.97
CLCN1-201ENST00000343257 ERICH6Q7L0X2 663 aa21.09■□□□□ 0.97
CLCN1-201ENST00000343257 SIN3AQ96ST3 1273 aa21.07■□□□□ 0.96
CLCN1-201ENST00000343257 KIF21BO75037 1637 aa21.06■□□□□ 0.96
CLCN1-201ENST00000343257 SMARCA4P51532 1647 aa21■□□□□ 0.95
CLCN1-201ENST00000343257 SYNJ1O43426 1573 aa20.98■□□□□ 0.95
CLCN1-201ENST00000343257 PABPN1Q86U42 306 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLCN1-201ENST00000343257 ANP32CO43423 234 aa20.95■□□□□ 0.94
CLCN1-201ENST00000343257 RAB3GAP2Q9H2M9 1393 aa20.91■□□□□ 0.94
CLCN1-201ENST00000343257 CDK11AQ9UQ88 783 aaPredicted RBP20.9■□□□□ 0.94
CLCN1-201ENST00000343257 PPP1R15AO75807 674 aaPredicted RBP20.89■□□□□ 0.94
CLCN1-201ENST00000343257 CCNB3Q8WWL7 1395 aa20.89■□□□□ 0.94
CLCN1-201ENST00000343257 BAZ1BQ9UIG0 1483 aaKnown RBP20.87■□□□□ 0.93
CLCN1-201ENST00000343257 FAM50AQ14320 339 aaKnown RBP20.86■□□□□ 0.93
CLCN1-201ENST00000343257 HNRNPUQ00839 825 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLCN1-201ENST00000343257 ARAP1Q96P48 1450 aa20.84■□□□□ 0.93
CLCN1-201ENST00000343257 WDR97A6NE52 1622 aa20.84■□□□□ 0.93
CLCN1-201ENST00000343257 RRBP1Q9P2E9 1410 aaKnown RBP20.8■□□□□ 0.92
CLCN1-201ENST00000343257 DEKP35659 375 aaKnown RBP20.79■□□□□ 0.92
CLCN1-201ENST00000343257 ATP1B4Q9UN42 357 aaPredicted RBP20.79■□□□□ 0.92
CLCN1-201ENST00000343257 NBR1Q14596 966 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms