RNA–Protein interactions for RNA: ENST00000413806.7

SMARCA4-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 5 BASIC

Gene SMARCA4, Length 5,512 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-202ENST00000413806 DCAF8L2P0C7V8 631 aa23.37■■□□□ 1.33
SMARCA4-202ENST00000413806 NISCHQ9Y2I1 1504 aa23.13■■□□□ 1.29
SMARCA4-202ENST00000413806 SUPT5HO00267 1087 aaKnown RBP22.48■■□□□ 1.19
SMARCA4-202ENST00000413806 SHROOM4Q9ULL8 1493 aa22.11■■□□□ 1.13
SMARCA4-202ENST00000413806 PELP1Q8IZL8 1130 aaKnown RBP22.01■■□□□ 1.11
SMARCA4-202ENST00000413806 MYT1Q01538 1121 aa21.68■■□□□ 1.06
SMARCA4-202ENST00000413806 EHMT2Q96KQ7 1210 aa21.49■■□□□ 1.03
SMARCA4-202ENST00000413806 APLP2Q06481 763 aa21.39■■□□□ 1.02
SMARCA4-202ENST00000413806 ERICH6Q7L0X2 663 aa21.2■□□□□ 0.98
SMARCA4-202ENST00000413806 FAM9AQ8IZU1 332 aaPredicted RBP21.13■□□□□ 0.97
SMARCA4-202ENST00000413806 PCGF6Q9BYE7 350 aa21.12■□□□□ 0.97
SMARCA4-202ENST00000413806 CENPBP07199 599 aaPredicted RBP21.09■□□□□ 0.97
SMARCA4-202ENST00000413806 ZEB1P37275 1124 aaPredicted RBP21.05■□□□□ 0.96
SMARCA4-202ENST00000413806 CCER1Q8TC90 406 aaPredicted RBP20.94■□□□□ 0.94
SMARCA4-202ENST00000413806 TRIM41Q8WV44 630 aa20.94■□□□□ 0.94
SMARCA4-202ENST00000413806 TTBK1Q5TCY1 1321 aaPredicted RBP20.84■□□□□ 0.93
SMARCA4-202ENST00000413806 UBTFP17480 764 aaKnown RBP20.6■□□□□ 0.89
SMARCA4-202ENST00000413806 RANGAP1P46060 587 aaPredicted RBP20.58■□□□□ 0.89
SMARCA4-202ENST00000413806 ATP1B4Q9UN42 357 aaPredicted RBP20.44■□□□□ 0.86
SMARCA4-202ENST00000413806 TRIM26Q12899 539 aaPredicted RBP20.43■□□□□ 0.86
SMARCA4-202ENST00000413806 YTHDC1Q96MU7 727 aaKnown RBP20.42■□□□□ 0.86
SMARCA4-202ENST00000413806 NEFLP07196 543 aa20.41■□□□□ 0.86
SMARCA4-202ENST00000413806 HRCP23327 699 aa20.26■□□□□ 0.83
SMARCA4-202ENST00000413806 CHIC1Q5VXU3 224 aa20.2■□□□□ 0.82
SMARCA4-202ENST00000413806 PPARGC1BQ86YN6 1023 aaKnown RBP20.15■□□□□ 0.82
SMARCA4-202ENST00000413806 LOC105371045A0A1W2PR82 267 aa20.02■□□□□ 0.8
SMARCA4-202ENST00000413806 DAXXQ9UER7 740 aaPredicted RBP19.89■□□□□ 0.77
SMARCA4-202ENST00000413806 ITGAEP38570 1179 aa19.84■□□□□ 0.77
SMARCA4-202ENST00000413806 HNRNPUL2Q1KMD3 747 aaKnown RBP19.82■□□□□ 0.76
SMARCA4-202ENST00000413806 RTL5Q5HYW3 569 aaPredicted RBP19.79■□□□□ 0.76
SMARCA4-202ENST00000413806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.72■□□□□ 0.75
SMARCA4-202ENST00000413806 DIEXFQ68CQ4 756 aaKnown RBP19.63■□□□□ 0.73
SMARCA4-202ENST00000413806 POLR3GLQ9BT43 218 aa19.61■□□□□ 0.73
SMARCA4-202ENST00000413806 MYT1LQ9UL68 1186 aa19.56■□□□□ 0.72
SMARCA4-202ENST00000413806 GTF3C3Q9Y5Q9 886 aa19.54■□□□□ 0.72
SMARCA4-202ENST00000413806 ABCC9O60706 1549 aa19.53■□□□□ 0.72
SMARCA4-202ENST00000413806 ZNF316A6NFI3 1004 aaPredicted RBP19.47■□□□□ 0.71
SMARCA4-202ENST00000413806 FAM50AQ14320 339 aaKnown RBP19.45■□□□□ 0.7
SMARCA4-202ENST00000413806 PABPN1Q86U42 306 aaKnown RBP eCLIP19.38■□□□□ 0.69
SMARCA4-202ENST00000413806 TRIM52Q96A61 297 aa19.32■□□□□ 0.68
SMARCA4-202ENST00000413806 CNGB1Q14028 1251 aaPredicted RBP19.31■□□□□ 0.68
SMARCA4-202ENST00000413806 BCANQ96GW7 911 aa19.27■□□□□ 0.68
SMARCA4-202ENST00000413806 NEUROD1Q13562 356 aa19.26■□□□□ 0.67
SMARCA4-202ENST00000413806 ANP32CO43423 234 aa19.23■□□□□ 0.67
SMARCA4-202ENST00000413806 ZCCHC6Q5VYS8 1495 aaKnown RBP19.22■□□□□ 0.67
SMARCA4-202ENST00000413806 ACIN1Q9UKV3 1341 aaKnown RBP19.21■□□□□ 0.67
SMARCA4-202ENST00000413806 CSRNP3Q8WYN3 585 aa19.2■□□□□ 0.66
SMARCA4-202ENST00000413806 CDK11AQ9UQ88 783 aaPredicted RBP19.19■□□□□ 0.66
SMARCA4-202ENST00000413806 SLC4A1APQ9BWU0 796 aaKnown RBP19.19■□□□□ 0.66
SMARCA4-202ENST00000413806 EIF5BO60841 1220 aaKnown RBP19.18■□□□□ 0.66
SMARCA4-202ENST00000413806 CLSPNQ9HAW4 1339 aa19.14■□□□□ 0.65
SMARCA4-202ENST00000413806 DCAF1Q9Y4B6 1507 aa19.14■□□□□ 0.65
SMARCA4-202ENST00000413806 GLIPR1L2Q4G1C9 344 aa19.1■□□□□ 0.65
SMARCA4-202ENST00000413806 SCRIBQ14160 1630 aa19.05■□□□□ 0.64
SMARCA4-202ENST00000413806 CCDC180Q9P1Z9 1646 aa19.03■□□□□ 0.64
SMARCA4-202ENST00000413806 ZNF326Q5BKZ1 582 aaKnown RBP19■□□□□ 0.63
SMARCA4-202ENST00000413806 ANP32AP39687 249 aaKnown RBP18.91■□□□□ 0.62
SMARCA4-202ENST00000413806 P3H3Q8IVL6 736 aa18.9■□□□□ 0.62
SMARCA4-202ENST00000413806 FBLN2P98095 1184 aa18.88■□□□□ 0.61
SMARCA4-202ENST00000413806 ZBTB47Q9UFB7 747 aaPredicted RBP18.81■□□□□ 0.6
SMARCA4-202ENST00000413806 TONSLQ96HA7 1378 aa18.8■□□□□ 0.6
SMARCA4-202ENST00000413806 CANXP27824 592 aaKnown RBP18.78■□□□□ 0.6
SMARCA4-202ENST00000413806 SCAF1Q9H7N4 1312 aaKnown RBP18.74■□□□□ 0.59
SMARCA4-202ENST00000413806 ZNF777Q9ULD5 760 aaPredicted RBP18.72■□□□□ 0.59
SMARCA4-202ENST00000413806 ARID3CA6NKF2 412 aa18.72■□□□□ 0.59
SMARCA4-202ENST00000413806 NEFMP07197 916 aa18.72■□□□□ 0.59
SMARCA4-202ENST00000413806 NPM2Q86SE8 214 aaKnown RBP18.71■□□□□ 0.59
SMARCA4-202ENST00000413806 EEA1Q15075 1411 aa18.65■□□□□ 0.58
SMARCA4-202ENST00000413806 FKBP8Q14318 412 aa18.64■□□□□ 0.58
SMARCA4-202ENST00000413806 NBR1Q14596 966 aa18.64■□□□□ 0.57
SMARCA4-202ENST00000413806 ANP32BQ92688 251 aaKnown RBP18.61■□□□□ 0.57
SMARCA4-202ENST00000413806 CLIP1P30622 1438 aa18.61■□□□□ 0.57
SMARCA4-202ENST00000413806 DDX10Q13206 875 aaKnown RBP18.58■□□□□ 0.57
SMARCA4-202ENST00000413806 HNRNPUQ00839 825 aaKnown RBP eCLIP18.58■□□□□ 0.56
SMARCA4-202ENST00000413806 RB1CC1Q8TDY2 1594 aa18.57■□□□□ 0.56
SMARCA4-202ENST00000413806 GOLGA3Q08378 1498 aa18.56■□□□□ 0.56
SMARCA4-202ENST00000413806 ANP32EQ9BTT0 268 aa18.56■□□□□ 0.56
SMARCA4-202ENST00000413806 RSF1Q96T23 1441 aaPredicted RBP18.55■□□□□ 0.56
SMARCA4-202ENST00000413806 MYO15BQ96JP2 1530 aa18.53■□□□□ 0.56
SMARCA4-202ENST00000413806 MTUS2Q5JR59 1369 aa18.5■□□□□ 0.55
SMARCA4-202ENST00000413806 CEP162Q5TB80 1403 aa18.49■□□□□ 0.55
SMARCA4-202ENST00000413806 FAM9BQ8IZU0 186 aa18.49■□□□□ 0.55
SMARCA4-202ENST00000413806 NACADO15069 1562 aa18.46■□□□□ 0.54
SMARCA4-202ENST00000413806 SLC24A1O60721 1099 aa18.45■□□□□ 0.54
SMARCA4-202ENST00000413806 BCL11AQ9H165 835 aa18.45■□□□□ 0.54
SMARCA4-202ENST00000413806 CHIC2Q9UKJ5 165 aa18.45■□□□□ 0.54
SMARCA4-202ENST00000413806 TMC1Q8TDI8 760 aa18.42■□□□□ 0.54
SMARCA4-202ENST00000413806 UPF2Q9HAU5 1272 aaKnown RBP18.41■□□□□ 0.54
SMARCA4-202ENST00000413806 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.4■□□□□ 0.54
SMARCA4-202ENST00000413806 MIER1Q8N108 512 aa18.4■□□□□ 0.54
SMARCA4-202ENST00000413806 TNIKQ9UKE5 1360 aa18.4■□□□□ 0.54
SMARCA4-202ENST00000413806 WRNQ14191 1432 aaPredicted RBP eCLIP18.4■□□□□ 0.545e-6■■□□□ 12.5
SMARCA4-202ENST00000413806 TSPY4P0CV99 314 aa18.39■□□□□ 0.53
SMARCA4-202ENST00000413806 TSPY10P0CW01 314 aa18.39■□□□□ 0.53
SMARCA4-202ENST00000413806 MRS2Q9HD23 443 aa18.37■□□□□ 0.53
SMARCA4-202ENST00000413806 CHGAP10645 457 aaKnown RBP18.37■□□□□ 0.53
SMARCA4-202ENST00000413806 CCDC136Q96JN2 1154 aa18.37■□□□□ 0.53
SMARCA4-202ENST00000413806 ESF1Q9H501 851 aaKnown RBP18.37■□□□□ 0.53
SMARCA4-202ENST00000413806 CEP164Q9UPV0 1460 aa18.37■□□□□ 0.53
SMARCA4-202ENST00000413806 NPM1P06748 294 aaKnown RBP eCLIP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms