RNA–Protein interactions for RNA: ENST00000388940.8

SCFD2-201, Transcript of sec1 family domain containing 2, humanhuman

TSL 2 BASIC

Gene SCFD2, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD2-201ENST00000388940 NISCHQ9Y2I1 1504 aa31.79■■■□□ 2.68
SCFD2-201ENST00000388940 CCDC180Q9P1Z9 1646 aa27.3■■□□□ 1.96
SCFD2-201ENST00000388940 ZCCHC6Q5VYS8 1495 aaKnown RBP26.87■■□□□ 1.89
SCFD2-201ENST00000388940 SHROOM4Q9ULL8 1493 aa26.56■■□□□ 1.84
SCFD2-201ENST00000388940 DCAF1Q9Y4B6 1507 aa26.27■■□□□ 1.8
SCFD2-201ENST00000388940 DCAF8L2P0C7V8 631 aa26.01■■□□□ 1.75
SCFD2-201ENST00000388940 SUPT5HO00267 1087 aaKnown RBP25.99■■□□□ 1.75
SCFD2-201ENST00000388940 MYO15BQ96JP2 1530 aa25.63■■□□□ 1.69
SCFD2-201ENST00000388940 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
SCFD2-201ENST00000388940 ABCC9O60706 1549 aa25.31■■□□□ 1.64
SCFD2-201ENST00000388940 SCRIBQ14160 1630 aa25.25■■□□□ 1.63
SCFD2-201ENST00000388940 NACADO15069 1562 aa25.23■■□□□ 1.63
SCFD2-201ENST00000388940 RSF1Q96T23 1441 aaPredicted RBP25.01■■□□□ 1.59
SCFD2-201ENST00000388940 RB1CC1Q8TDY2 1594 aa24.8■■□□□ 1.56
SCFD2-201ENST00000388940 CECR2Q9BXF3 1484 aa24.67■■□□□ 1.54
SCFD2-201ENST00000388940 MROH2BQ7Z745 1585 aa24.62■■□□□ 1.53
SCFD2-201ENST00000388940 WIZO95785 1651 aa24.47■■□□□ 1.51
SCFD2-201ENST00000388940 BAZ1AQ9NRL2 1556 aaPredicted RBP24.47■■□□□ 1.51
SCFD2-201ENST00000388940 LOC105371045A0A1W2PR82 267 aa24.42■■□□□ 1.5
SCFD2-201ENST00000388940 UNC13AQ9UPW8 1703 aa24.42■■□□□ 1.5
SCFD2-201ENST00000388940 TRIM41Q8WV44 630 aa24.35■■□□□ 1.49
SCFD2-201ENST00000388940 SMARCA4P51532 1647 aa24.26■■□□□ 1.47
SCFD2-201ENST00000388940 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.46
SCFD2-201ENST00000388940 HRCP23327 699 aa24.19■■□□□ 1.46
SCFD2-201ENST00000388940 PCGF6Q9BYE7 350 aa24.19■■□□□ 1.46
SCFD2-201ENST00000388940 EIF4G1Q04637 1599 aaKnown RBP24.18■■□□□ 1.46
SCFD2-201ENST00000388940 BICRAQ9NZM4 1560 aa24.09■■□□□ 1.45
SCFD2-201ENST00000388940 SMARCA2P51531 1590 aa24.02■■□□□ 1.44
SCFD2-201ENST00000388940 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
SCFD2-201ENST00000388940 TRIM26Q12899 539 aaPredicted RBP23.97■■□□□ 1.43
SCFD2-201ENST00000388940 FAM9AQ8IZU1 332 aaPredicted RBP23.95■■□□□ 1.42
SCFD2-201ENST00000388940 PEG3Q9GZU2 1588 aa23.92■■□□□ 1.42
SCFD2-201ENST00000388940 PABPN1Q86U42 306 aaKnown RBP eCLIP23.86■■□□□ 1.41
SCFD2-201ENST00000388940 ABCC8Q09428 1581 aa23.77■■□□□ 1.4
SCFD2-201ENST00000388940 ATAD2BQ9ULI0 1458 aa23.65■■□□□ 1.38
SCFD2-201ENST00000388940 EEA1Q15075 1411 aa23.6■■□□□ 1.37
SCFD2-201ENST00000388940 EHMT2Q96KQ7 1210 aa23.59■■□□□ 1.37
SCFD2-201ENST00000388940 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
SCFD2-201ENST00000388940 SOGA1O94964 1423 aa23.51■■□□□ 1.35
SCFD2-201ENST00000388940 PPARGC1BQ86YN6 1023 aaKnown RBP23.51■■□□□ 1.35
SCFD2-201ENST00000388940 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.35
SCFD2-201ENST00000388940 ZEB1P37275 1124 aaPredicted RBP23.45■■□□□ 1.34
SCFD2-201ENST00000388940 TNIKQ9UKE5 1360 aa23.43■■□□□ 1.34
SCFD2-201ENST00000388940 CSRNP3Q8WYN3 585 aa23.42■■□□□ 1.34
SCFD2-201ENST00000388940 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
SCFD2-201ENST00000388940 SYNJ1O43426 1573 aa23.38■■□□□ 1.33
SCFD2-201ENST00000388940 CEP162Q5TB80 1403 aa23.35■■□□□ 1.33
SCFD2-201ENST00000388940 HMGXB3Q12766 1538 aa23.32■■□□□ 1.32
SCFD2-201ENST00000388940 GOLGA3Q08378 1498 aa23.32■■□□□ 1.32
SCFD2-201ENST00000388940 NCAPD3P42695 1498 aa23.3■■□□□ 1.32
SCFD2-201ENST00000388940 KIF21BO75037 1637 aa23.26■■□□□ 1.31
SCFD2-201ENST00000388940 CEP164Q9UPV0 1460 aa23.23■■□□□ 1.31
SCFD2-201ENST00000388940 TOP2BQ02880 1626 aa23.21■■□□□ 1.31
SCFD2-201ENST00000388940 UBTFP17480 764 aaKnown RBP23.18■■□□□ 1.3
SCFD2-201ENST00000388940 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
SCFD2-201ENST00000388940 CFTRP13569 1480 aa23.02■■□□□ 1.28
SCFD2-201ENST00000388940 RAPGEF2Q9Y4G8 1499 aa22.98■■□□□ 1.27
SCFD2-201ENST00000388940 CLIP1P30622 1438 aa22.98■■□□□ 1.27
SCFD2-201ENST00000388940 PRDM2Q13029 1718 aa22.96■■□□□ 1.27
SCFD2-201ENST00000388940 CUX1P39880 1505 aa22.95■■□□□ 1.26
SCFD2-201ENST00000388940 ERICH3Q5RHP9 1530 aa22.94■■□□□ 1.26
SCFD2-201ENST00000388940 VPS8Q8N3P4 1428 aa22.9■■□□□ 1.26
SCFD2-201ENST00000388940 PRXQ9BXM0 1461 aa22.9■■□□□ 1.26
SCFD2-201ENST00000388940 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.88■■□□□ 1.25
SCFD2-201ENST00000388940 CCER1Q8TC90 406 aaPredicted RBP22.86■■□□□ 1.25
SCFD2-201ENST00000388940 PELP1Q8IZL8 1130 aaKnown RBP22.84■■□□□ 1.25
SCFD2-201ENST00000388940 KIF27Q86VH2 1401 aa22.82■■□□□ 1.24
SCFD2-201ENST00000388940 TTBK1Q5TCY1 1321 aaPredicted RBP22.81■■□□□ 1.24
SCFD2-201ENST00000388940 CADPSQ9ULU8 1353 aa22.76■■□□□ 1.23
SCFD2-201ENST00000388940 CC2D2AQ9P2K1 1620 aa22.73■■□□□ 1.23
SCFD2-201ENST00000388940 APLP2Q06481 763 aa22.69■■□□□ 1.22
SCFD2-201ENST00000388940 ARAP1Q96P48 1450 aa22.66■■□□□ 1.22
SCFD2-201ENST00000388940 CUX2O14529 1486 aa22.57■■□□□ 1.2
SCFD2-201ENST00000388940 RANGAP1P46060 587 aaPredicted RBP22.56■■□□□ 1.2
SCFD2-201ENST00000388940 FGD5Q6ZNL6 1462 aa22.56■■□□□ 1.2
SCFD2-201ENST00000388940 IGF1RP08069 1367 aa22.56■■□□□ 1.2
SCFD2-201ENST00000388940 FANCD2Q9BXW9 1451 aa22.51■■□□□ 1.19
SCFD2-201ENST00000388940 ARHGAP35Q9NRY4 1499 aa22.5■■□□□ 1.19
SCFD2-201ENST00000388940 HNRNPUL2Q1KMD3 747 aaKnown RBP22.48■■□□□ 1.19
SCFD2-201ENST00000388940 DNMBPQ6XZF7 1577 aa22.46■■□□□ 1.19
SCFD2-201ENST00000388940 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
SCFD2-201ENST00000388940 KANK4Q5T7N3 995 aaPredicted RBP22.38■■□□□ 1.17
SCFD2-201ENST00000388940 ABCA10Q8WWZ4 1543 aa22.38■■□□□ 1.17
SCFD2-201ENST00000388940 RRBP1Q9P2E9 1410 aaKnown RBP22.37■■□□□ 1.17
SCFD2-201ENST00000388940 TOPBP1Q92547 1522 aa22.37■■□□□ 1.17
SCFD2-201ENST00000388940 MAP3K1Q13233 1512 aa22.36■■□□□ 1.17
SCFD2-201ENST00000388940 LAMC3Q9Y6N6 1575 aa22.35■■□□□ 1.17
SCFD2-201ENST00000388940 DIEXFQ68CQ4 756 aaKnown RBP22.33■■□□□ 1.16
SCFD2-201ENST00000388940 POLA1P09884 1462 aaPredicted RBP22.32■■□□□ 1.16
SCFD2-201ENST00000388940 NESP48681 1621 aa22.31■■□□□ 1.16
SCFD2-201ENST00000388940 ZNF316A6NFI3 1004 aaPredicted RBP22.29■■□□□ 1.16
SCFD2-201ENST00000388940 CLSPNQ9HAW4 1339 aa22.29■■□□□ 1.16
SCFD2-201ENST00000388940 RAD54L2Q9Y4B4 1467 aa22.28■■□□□ 1.16
SCFD2-201ENST00000388940 CUL7Q14999 1698 aa22.28■■□□□ 1.16
SCFD2-201ENST00000388940 TIAM1Q13009 1591 aa22.27■■□□□ 1.16
SCFD2-201ENST00000388940 MYT1Q01538 1121 aa22.25■■□□□ 1.15
SCFD2-201ENST00000388940 WDR97A6NE52 1622 aa22.24■■□□□ 1.15
SCFD2-201ENST00000388940 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
SCFD2-201ENST00000388940 CCNB3Q8WWL7 1395 aa22.22■■□□□ 1.15
SCFD2-201ENST00000388940 URB2Q14146 1524 aaKnown RBP22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms