RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 NISCHQ9Y2I1 1504 aa33.2■■■□□ 2.91
VIPAS39-208ENST00000556412 CCDC180Q9P1Z9 1646 aa29.23■■■□□ 2.27
VIPAS39-208ENST00000556412 ABCC9O60706 1549 aa28.45■■■□□ 2.14
VIPAS39-208ENST00000556412 DCAF8L2P0C7V8 631 aa27.81■■■□□ 2.04
VIPAS39-208ENST00000556412 ZCCHC6Q5VYS8 1495 aaKnown RBP27.74■■■□□ 2.03
VIPAS39-208ENST00000556412 NACADO15069 1562 aa27.46■■□□□ 1.99
VIPAS39-208ENST00000556412 RB1CC1Q8TDY2 1594 aa27.42■■□□□ 1.98
VIPAS39-208ENST00000556412 DCAF1Q9Y4B6 1507 aa27.41■■□□□ 1.98
VIPAS39-208ENST00000556412 MYO15BQ96JP2 1530 aa27.37■■□□□ 1.97
VIPAS39-208ENST00000556412 SCRIBQ14160 1630 aa26.87■■□□□ 1.89
VIPAS39-208ENST00000556412 PABPN1Q86U42 306 aaKnown RBP eCLIP26.71■■□□□ 1.87
VIPAS39-208ENST00000556412 UNC13AQ9UPW8 1703 aa26.67■■□□□ 1.86
VIPAS39-208ENST00000556412 SHROOM4Q9ULL8 1493 aa26.67■■□□□ 1.86
VIPAS39-208ENST00000556412 BICRAQ9NZM4 1560 aa26.55■■□□□ 1.84
VIPAS39-208ENST00000556412 CECR2Q9BXF3 1484 aa25.88■■□□□ 1.73
VIPAS39-208ENST00000556412 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
VIPAS39-208ENST00000556412 DNAJC5BQ9UF47 199 aa25.75■■□□□ 1.71
VIPAS39-208ENST00000556412 BAZ1AQ9NRL2 1556 aaPredicted RBP25.71■■□□□ 1.71
VIPAS39-208ENST00000556412 SMARCA4P51532 1647 aa25.66■■□□□ 1.7
VIPAS39-208ENST00000556412 CC2D2AQ9P2K1 1620 aa25.65■■□□□ 1.7
VIPAS39-208ENST00000556412 MROH2BQ7Z745 1585 aa25.63■■□□□ 1.69
VIPAS39-208ENST00000556412 RSF1Q96T23 1441 aaPredicted RBP25.49■■□□□ 1.67
VIPAS39-208ENST00000556412 ATAD2BQ9ULI0 1458 aa25.47■■□□□ 1.67
VIPAS39-208ENST00000556412 SMARCA2P51531 1590 aa25.42■■□□□ 1.66
VIPAS39-208ENST00000556412 NCAPD3P42695 1498 aa25.36■■□□□ 1.65
VIPAS39-208ENST00000556412 PEG3Q9GZU2 1588 aa25.35■■□□□ 1.65
VIPAS39-208ENST00000556412 WIZO95785 1651 aa25.34■■□□□ 1.65
VIPAS39-208ENST00000556412 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
VIPAS39-208ENST00000556412 SUPT5HO00267 1087 aaKnown RBP25.29■■□□□ 1.64
VIPAS39-208ENST00000556412 HMGXB3Q12766 1538 aa25.24■■□□□ 1.63
VIPAS39-208ENST00000556412 TOP2AP11388 1531 aaKnown RBP25.1■■□□□ 1.61
VIPAS39-208ENST00000556412 CCDC88BA6NC98 1476 aa24.84■■□□□ 1.57
VIPAS39-208ENST00000556412 NESP48681 1621 aa24.71■■□□□ 1.55
VIPAS39-208ENST00000556412 CADPSQ9ULU8 1353 aa24.69■■□□□ 1.54
VIPAS39-208ENST00000556412 LAMC3Q9Y6N6 1575 aa24.61■■□□□ 1.53
VIPAS39-208ENST00000556412 CFTRP13569 1480 aa24.6■■□□□ 1.53
VIPAS39-208ENST00000556412 PDS5BQ9NTI5 1447 aa24.5■■□□□ 1.51
VIPAS39-208ENST00000556412 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
VIPAS39-208ENST00000556412 FANCD2Q9BXW9 1451 aa24.42■■□□□ 1.5
VIPAS39-208ENST00000556412 CEP164Q9UPV0 1460 aa24.35■■□□□ 1.49
VIPAS39-208ENST00000556412 KIF21AQ7Z4S6 1674 aa24.31■■□□□ 1.48
VIPAS39-208ENST00000556412 PRDM2Q13029 1718 aa24.26■■□□□ 1.47
VIPAS39-208ENST00000556412 MRC2Q9UBG0 1479 aa24.22■■□□□ 1.47
VIPAS39-208ENST00000556412 THOC2Q8NI27 1593 aaKnown RBP24.15■■□□□ 1.46
VIPAS39-208ENST00000556412 URB2Q14146 1524 aaKnown RBP24.14■■□□□ 1.45
VIPAS39-208ENST00000556412 WDR62O43379 1518 aa24.08■■□□□ 1.45
VIPAS39-208ENST00000556412 ABCC8Q09428 1581 aa24.08■■□□□ 1.44
VIPAS39-208ENST00000556412 TOPBP1Q92547 1522 aa24.05■■□□□ 1.44
VIPAS39-208ENST00000556412 WRNQ14191 1432 aaPredicted RBP eCLIP24.05■■□□□ 1.44
VIPAS39-208ENST00000556412 DNMBPQ6XZF7 1577 aa24.02■■□□□ 1.44
VIPAS39-208ENST00000556412 CUX1P39880 1505 aa24.01■■□□□ 1.43
VIPAS39-208ENST00000556412 CUX2O14529 1486 aa24■■□□□ 1.43
VIPAS39-208ENST00000556412 SYNJ1O43426 1573 aa23.92■■□□□ 1.42
VIPAS39-208ENST00000556412 FGD5Q6ZNL6 1462 aa23.9■■□□□ 1.42
VIPAS39-208ENST00000556412 POLA1P09884 1462 aaPredicted RBP23.88■■□□□ 1.41
VIPAS39-208ENST00000556412 TOP2BQ02880 1626 aa23.87■■□□□ 1.41
VIPAS39-208ENST00000556412 TRIM41Q8WV44 630 aa23.82■■□□□ 1.4
VIPAS39-208ENST00000556412 BIVM-ERCC5R4GMW8 1640 aa23.82■■□□□ 1.4
VIPAS39-208ENST00000556412 SOGA1O94964 1423 aa23.82■■□□□ 1.4
VIPAS39-208ENST00000556412 RAD54L2Q9Y4B4 1467 aa23.82■■□□□ 1.4
VIPAS39-208ENST00000556412 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
VIPAS39-208ENST00000556412 CHIC1Q5VXU3 224 aa23.75■■□□□ 1.39
VIPAS39-208ENST00000556412 ZNF608Q9ULD9 1512 aaPredicted RBP23.7■■□□□ 1.38
VIPAS39-208ENST00000556412 TARBP1Q13395 1621 aaKnown RBP23.7■■□□□ 1.38
VIPAS39-208ENST00000556412 TDRD9Q8NDG6 1382 aaKnown RBP23.68■■□□□ 1.38
VIPAS39-208ENST00000556412 ABCA10Q8WWZ4 1543 aa23.64■■□□□ 1.37
VIPAS39-208ENST00000556412 AQRO60306 1485 aaKnown RBP eCLIP23.64■■□□□ 1.372e-6■■■■■ 28.9
VIPAS39-208ENST00000556412 EIF4G3O43432 1585 aaKnown RBP23.57■■□□□ 1.36
VIPAS39-208ENST00000556412 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
VIPAS39-208ENST00000556412 GAPVD1Q14C86 1478 aa23.53■■□□□ 1.36
VIPAS39-208ENST00000556412 KIF27Q86VH2 1401 aa23.51■■□□□ 1.35
VIPAS39-208ENST00000556412 ABCA5Q8WWZ7 1642 aa23.48■■□□□ 1.35
VIPAS39-208ENST00000556412 GRIN2BQ13224 1484 aa23.47■■□□□ 1.35
VIPAS39-208ENST00000556412 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
VIPAS39-208ENST00000556412 SNAPC4Q5SXM2 1469 aa23.41■■□□□ 1.34
VIPAS39-208ENST00000556412 FAM9AQ8IZU1 332 aaPredicted RBP23.4■■□□□ 1.34
VIPAS39-208ENST00000556412 FBLN2P98095 1184 aa23.38■■□□□ 1.33
VIPAS39-208ENST00000556412 IGF1RP08069 1367 aa23.36■■□□□ 1.33
VIPAS39-208ENST00000556412 PBRM1Q86U86 1689 aa23.36■■□□□ 1.33
VIPAS39-208ENST00000556412 ERICH3Q5RHP9 1530 aa23.35■■□□□ 1.33
VIPAS39-208ENST00000556412 MAGI1Q96QZ7 1491 aaPredicted RBP23.34■■□□□ 1.33
VIPAS39-208ENST00000556412 CHMP7Q8WUX9 453 aaPredicted RBP23.32■■□□□ 1.32
VIPAS39-208ENST00000556412 EEA1Q15075 1411 aa23.28■■□□□ 1.32
VIPAS39-208ENST00000556412 FHAD1B1AJZ9 1412 aa23.27■■□□□ 1.32
VIPAS39-208ENST00000556412 CSRNP3Q8WYN3 585 aa23.26■■□□□ 1.31
VIPAS39-208ENST00000556412 SYNJ2O15056 1496 aa23.26■■□□□ 1.31
VIPAS39-208ENST00000556412 ADAMTS12P58397 1594 aa23.26■■□□□ 1.31
VIPAS39-208ENST00000556412 CARMIL1Q5VZK9 1371 aa23.24■■□□□ 1.31
VIPAS39-208ENST00000556412 CUL7Q14999 1698 aa23.19■■□□□ 1.3
VIPAS39-208ENST00000556412 OSCARQ8IYS5 282 aa23.17■■□□□ 1.3
VIPAS39-208ENST00000556412 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
VIPAS39-208ENST00000556412 CHD1O14646 1710 aa23.14■■□□□ 1.29
VIPAS39-208ENST00000556412 EHMT2Q96KQ7 1210 aa23.14■■□□□ 1.29
VIPAS39-208ENST00000556412 RAPGEF2Q9Y4G8 1499 aa23.13■■□□□ 1.29
VIPAS39-208ENST00000556412 PRXQ9BXM0 1461 aa23.12■■□□□ 1.29
VIPAS39-208ENST00000556412 NUP160Q12769 1436 aa23.02■■□□□ 1.28
VIPAS39-208ENST00000556412 CEP170Q5SW79 1584 aa23.01■■□□□ 1.27
VIPAS39-208ENST00000556412 KIF21BO75037 1637 aa22.97■■□□□ 1.27
VIPAS39-208ENST00000556412 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
VIPAS39-208ENST00000556412 GOLGA3Q08378 1498 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms