RNA–Protein interactions for RNA: ENST00000351691.9

TRAF3-202, Transcript of TNF receptor associated factor 3, humanhuman

TSL 1 (best) BASIC

Gene TRAF3, Length 2,239 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-202ENST00000351691 NISCHQ9Y2I1 1504 aa30.25■■■□□ 2.43
TRAF3-202ENST00000351691 CCDC180Q9P1Z9 1646 aa26.12■■□□□ 1.77
TRAF3-202ENST00000351691 ZCCHC6Q5VYS8 1495 aaKnown RBP25.58■■□□□ 1.69
TRAF3-202ENST00000351691 SHROOM4Q9ULL8 1493 aa25.29■■□□□ 1.64
TRAF3-202ENST00000351691 HRCP23327 699 aa25.2■■□□□ 1.62
TRAF3-202ENST00000351691 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
TRAF3-202ENST00000351691 DCAF8L2P0C7V8 631 aa24.84■■□□□ 1.57
TRAF3-202ENST00000351691 ABCC9O60706 1549 aa24.83■■□□□ 1.56
TRAF3-202ENST00000351691 SUPT5HO00267 1087 aaKnown RBP24.81■■□□□ 1.56
TRAF3-202ENST00000351691 PELP1Q8IZL8 1130 aaKnown RBP24.55■■□□□ 1.52
TRAF3-202ENST00000351691 MYO15BQ96JP2 1530 aa24.54■■□□□ 1.52
TRAF3-202ENST00000351691 PCGF6Q9BYE7 350 aa24.43■■□□□ 1.5
TRAF3-202ENST00000351691 CHIC1Q5VXU3 224 aa24.42■■□□□ 1.5
TRAF3-202ENST00000351691 PPARGC1BQ86YN6 1023 aaKnown RBP24.31■■□□□ 1.48
TRAF3-202ENST00000351691 NACADO15069 1562 aa24.26■■□□□ 1.47
TRAF3-202ENST00000351691 SCRIBQ14160 1630 aa24.18■■□□□ 1.46
TRAF3-202ENST00000351691 RB1CC1Q8TDY2 1594 aa24.11■■□□□ 1.45
TRAF3-202ENST00000351691 TRIM26Q12899 539 aaPredicted RBP23.93■■□□□ 1.42
TRAF3-202ENST00000351691 ZEB1P37275 1124 aaPredicted RBP23.91■■□□□ 1.42
TRAF3-202ENST00000351691 UNC13AQ9UPW8 1703 aa23.88■■□□□ 1.41
TRAF3-202ENST00000351691 RSF1Q96T23 1441 aaPredicted RBP23.82■■□□□ 1.4
TRAF3-202ENST00000351691 MYT1Q01538 1121 aa23.71■■□□□ 1.39
TRAF3-202ENST00000351691 SCAF1Q9H7N4 1312 aaKnown RBP23.68■■□□□ 1.38
TRAF3-202ENST00000351691 LOC105371045A0A1W2PR82 267 aa23.61■■□□□ 1.37
TRAF3-202ENST00000351691 BICRAQ9NZM4 1560 aa23.47■■□□□ 1.35
TRAF3-202ENST00000351691 CECR2Q9BXF3 1484 aa23.41■■□□□ 1.34
TRAF3-202ENST00000351691 PABPN1Q86U42 306 aaKnown RBP eCLIP23.4■■□□□ 1.34
TRAF3-202ENST00000351691 MROH2BQ7Z745 1585 aa23.39■■□□□ 1.34
TRAF3-202ENST00000351691 BAZ1AQ9NRL2 1556 aaPredicted RBP23.28■■□□□ 1.32
TRAF3-202ENST00000351691 TRIM41Q8WV44 630 aa23.28■■□□□ 1.32
TRAF3-202ENST00000351691 WIZO95785 1651 aa23.25■■□□□ 1.31
TRAF3-202ENST00000351691 ACIN1Q9UKV3 1341 aaKnown RBP23.24■■□□□ 1.31
TRAF3-202ENST00000351691 SMARCA4P51532 1647 aa23.08■■□□□ 1.29
TRAF3-202ENST00000351691 TOP2AP11388 1531 aaKnown RBP23.04■■□□□ 1.28
TRAF3-202ENST00000351691 EIF4G1Q04637 1599 aaKnown RBP23.04■■□□□ 1.28
TRAF3-202ENST00000351691 NEUROD1Q13562 356 aa23.02■■□□□ 1.28
TRAF3-202ENST00000351691 CENPBP07199 599 aaPredicted RBP23■■□□□ 1.27
TRAF3-202ENST00000351691 GTF3C3Q9Y5Q9 886 aa22.9■■□□□ 1.26
TRAF3-202ENST00000351691 SMARCA2P51531 1590 aa22.86■■□□□ 1.25
TRAF3-202ENST00000351691 FAM9AQ8IZU1 332 aaPredicted RBP22.85■■□□□ 1.25
TRAF3-202ENST00000351691 CCDC88BA6NC98 1476 aa22.83■■□□□ 1.25
TRAF3-202ENST00000351691 DIEXFQ68CQ4 756 aaKnown RBP22.78■■□□□ 1.24
TRAF3-202ENST00000351691 PEG3Q9GZU2 1588 aa22.74■■□□□ 1.23
TRAF3-202ENST00000351691 CCER1Q8TC90 406 aaPredicted RBP22.69■■□□□ 1.22
TRAF3-202ENST00000351691 ATAD2BQ9ULI0 1458 aa22.63■■□□□ 1.21
TRAF3-202ENST00000351691 ABCC8Q09428 1581 aa22.62■■□□□ 1.21
TRAF3-202ENST00000351691 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.62■■□□□ 1.21
TRAF3-202ENST00000351691 EEA1Q15075 1411 aa22.59■■□□□ 1.21
TRAF3-202ENST00000351691 BAZ1BQ9UIG0 1483 aaKnown RBP22.54■■□□□ 1.2
TRAF3-202ENST00000351691 WRNQ14191 1432 aaPredicted RBP eCLIP22.48■■□□□ 1.19
TRAF3-202ENST00000351691 EHMT2Q96KQ7 1210 aa22.46■■□□□ 1.19
TRAF3-202ENST00000351691 CC2D2AQ9P2K1 1620 aa22.45■■□□□ 1.19
TRAF3-202ENST00000351691 ZNF316A6NFI3 1004 aaPredicted RBP22.44■■□□□ 1.18
TRAF3-202ENST00000351691 TNIKQ9UKE5 1360 aa22.42■■□□□ 1.18
TRAF3-202ENST00000351691 SOGA1O94964 1423 aa22.4■■□□□ 1.18
TRAF3-202ENST00000351691 HMGXB3Q12766 1538 aa22.39■■□□□ 1.18
TRAF3-202ENST00000351691 NCAPD3P42695 1498 aa22.36■■□□□ 1.17
TRAF3-202ENST00000351691 CSRNP3Q8WYN3 585 aa22.36■■□□□ 1.17
TRAF3-202ENST00000351691 CEP162Q5TB80 1403 aa22.33■■□□□ 1.17
TRAF3-202ENST00000351691 TTBK1Q5TCY1 1321 aaPredicted RBP22.3■■□□□ 1.16
TRAF3-202ENST00000351691 GOLGA3Q08378 1498 aa22.3■■□□□ 1.16
TRAF3-202ENST00000351691 CLSPNQ9HAW4 1339 aa22.28■■□□□ 1.16
TRAF3-202ENST00000351691 RUSC2Q8N2Y8 1516 aa22.25■■□□□ 1.15
TRAF3-202ENST00000351691 SYNJ1O43426 1573 aa22.25■■□□□ 1.15
TRAF3-202ENST00000351691 KIF21BO75037 1637 aa22.23■■□□□ 1.15
TRAF3-202ENST00000351691 CEP164Q9UPV0 1460 aa22.2■■□□□ 1.14
TRAF3-202ENST00000351691 UBTFP17480 764 aaKnown RBP22.14■■□□□ 1.14
TRAF3-202ENST00000351691 MIER1Q8N108 512 aa22.14■■□□□ 1.13
TRAF3-202ENST00000351691 YTHDC1Q96MU7 727 aaKnown RBP22.12■■□□□ 1.13
TRAF3-202ENST00000351691 TOP2BQ02880 1626 aa22.1■■□□□ 1.13
TRAF3-202ENST00000351691 BIVM-ERCC5R4GMW8 1640 aa22.08■■□□□ 1.12
TRAF3-202ENST00000351691 PRDM2Q13029 1718 aa21.97■■□□□ 1.11
TRAF3-202ENST00000351691 CLIP1P30622 1438 aa21.96■■□□□ 1.11
TRAF3-202ENST00000351691 DNAJC5BQ9UF47 199 aa21.96■■□□□ 1.11
TRAF3-202ENST00000351691 ANP32EQ9BTT0 268 aa21.92■■□□□ 1.1
TRAF3-202ENST00000351691 ERICH3Q5RHP9 1530 aa21.91■■□□□ 1.1
TRAF3-202ENST00000351691 CFTRP13569 1480 aa21.91■■□□□ 1.1
TRAF3-202ENST00000351691 VPS8Q8N3P4 1428 aa21.91■■□□□ 1.1
TRAF3-202ENST00000351691 RAPGEF2Q9Y4G8 1499 aa21.9■■□□□ 1.1
TRAF3-202ENST00000351691 SUPT16HQ9Y5B9 1047 aaKnown RBP21.89■■□□□ 1.09
TRAF3-202ENST00000351691 PRXQ9BXM0 1461 aa21.83■■□□□ 1.09
TRAF3-202ENST00000351691 NESP48681 1621 aa21.82■■□□□ 1.08
TRAF3-202ENST00000351691 CUX1P39880 1505 aa21.82■■□□□ 1.08
TRAF3-202ENST00000351691 CADPSQ9ULU8 1353 aa21.82■■□□□ 1.08
TRAF3-202ENST00000351691 TSHZ2Q9NRE2 1034 aa21.8■■□□□ 1.08
TRAF3-202ENST00000351691 KIF27Q86VH2 1401 aa21.75■■□□□ 1.07
TRAF3-202ENST00000351691 BCL11AQ9H165 835 aa21.75■■□□□ 1.07
TRAF3-202ENST00000351691 APLP2Q06481 763 aa21.74■■□□□ 1.07
TRAF3-202ENST00000351691 LAMC3Q9Y6N6 1575 aa21.68■■□□□ 1.06
TRAF3-202ENST00000351691 FANCD2Q9BXW9 1451 aa21.65■■□□□ 1.06
TRAF3-202ENST00000351691 HNRNPUL2Q1KMD3 747 aaKnown RBP21.64■■□□□ 1.05
TRAF3-202ENST00000351691 ARAP1Q96P48 1450 aa21.63■■□□□ 1.05
TRAF3-202ENST00000351691 KIF21AQ7Z4S6 1674 aa21.62■■□□□ 1.05
TRAF3-202ENST00000351691 DHX57Q6P158 1386 aaKnown RBP21.51■■□□□ 1.03
TRAF3-202ENST00000351691 CUX2O14529 1486 aa21.47■■□□□ 1.03
TRAF3-202ENST00000351691 IGF1RP08069 1367 aa21.46■■□□□ 1.03
TRAF3-202ENST00000351691 RANGAP1P46060 587 aaPredicted RBP21.46■■□□□ 1.03
TRAF3-202ENST00000351691 DNMBPQ6XZF7 1577 aa21.46■■□□□ 1.03
TRAF3-202ENST00000351691 ARHGAP35Q9NRY4 1499 aa21.45■■□□□ 1.02
TRAF3-202ENST00000351691 PDS5BQ9NTI5 1447 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms