RNA–Protein interactions for RNA: ENST00000409323.1

CHRNA1-204, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 1 (best) BASIC

Gene CHRNA1, Length 1,585 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-204ENST00000409323 NISCHQ9Y2I1 1504 aa33.31■■■□□ 2.92
CHRNA1-204ENST00000409323 CCDC180Q9P1Z9 1646 aa29.33■■■□□ 2.29
CHRNA1-204ENST00000409323 ABCC9O60706 1549 aa28.45■■■□□ 2.14
CHRNA1-204ENST00000409323 DCAF8L2P0C7V8 631 aa27.86■■■□□ 2.05
CHRNA1-204ENST00000409323 ZCCHC6Q5VYS8 1495 aaKnown RBP27.85■■■□□ 2.05
CHRNA1-204ENST00000409323 NACADO15069 1562 aa27.46■■□□□ 1.99
CHRNA1-204ENST00000409323 DCAF1Q9Y4B6 1507 aa27.45■■□□□ 1.99
CHRNA1-204ENST00000409323 RB1CC1Q8TDY2 1594 aa27.41■■□□□ 1.98
CHRNA1-204ENST00000409323 MYO15BQ96JP2 1530 aa27.34■■□□□ 1.97
CHRNA1-204ENST00000409323 SCRIBQ14160 1630 aa27■■□□□ 1.91
CHRNA1-204ENST00000409323 UNC13AQ9UPW8 1703 aa26.93■■□□□ 1.9
CHRNA1-204ENST00000409323 SHROOM4Q9ULL8 1493 aa26.88■■□□□ 1.89
CHRNA1-204ENST00000409323 PABPN1Q86U42 306 aaKnown RBP eCLIP26.71■■□□□ 1.87
CHRNA1-204ENST00000409323 BICRAQ9NZM4 1560 aa26.64■■□□□ 1.86
CHRNA1-204ENST00000409323 CECR2Q9BXF3 1484 aa26.01■■□□□ 1.75
CHRNA1-204ENST00000409323 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.73
CHRNA1-204ENST00000409323 SMARCA4P51532 1647 aa25.78■■□□□ 1.72
CHRNA1-204ENST00000409323 MROH2BQ7Z745 1585 aa25.77■■□□□ 1.72
CHRNA1-204ENST00000409323 BAZ1AQ9NRL2 1556 aaPredicted RBP25.76■■□□□ 1.71
CHRNA1-204ENST00000409323 DNAJC5BQ9UF47 199 aa25.7■■□□□ 1.71
CHRNA1-204ENST00000409323 CC2D2AQ9P2K1 1620 aa25.7■■□□□ 1.7
CHRNA1-204ENST00000409323 RSF1Q96T23 1441 aaPredicted RBP25.6■■□□□ 1.69
CHRNA1-204ENST00000409323 WIZO95785 1651 aa25.55■■□□□ 1.68
CHRNA1-204ENST00000409323 ATAD2BQ9ULI0 1458 aa25.5■■□□□ 1.67
CHRNA1-204ENST00000409323 SUPT5HO00267 1087 aaKnown RBP25.49■■□□□ 1.67
CHRNA1-204ENST00000409323 SMARCA2P51531 1590 aa25.44■■□□□ 1.66
CHRNA1-204ENST00000409323 PEG3Q9GZU2 1588 aa25.41■■□□□ 1.66
CHRNA1-204ENST00000409323 NCAPD3P42695 1498 aa25.34■■□□□ 1.65
CHRNA1-204ENST00000409323 BAZ1BQ9UIG0 1483 aaKnown RBP25.33■■□□□ 1.65
CHRNA1-204ENST00000409323 HMGXB3Q12766 1538 aa25.26■■□□□ 1.63
CHRNA1-204ENST00000409323 TOP2AP11388 1531 aaKnown RBP25.2■■□□□ 1.62
CHRNA1-204ENST00000409323 CCDC88BA6NC98 1476 aa24.95■■□□□ 1.58
CHRNA1-204ENST00000409323 NESP48681 1621 aa24.78■■□□□ 1.56
CHRNA1-204ENST00000409323 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
CHRNA1-204ENST00000409323 CFTRP13569 1480 aa24.62■■□□□ 1.53
CHRNA1-204ENST00000409323 LAMC3Q9Y6N6 1575 aa24.61■■□□□ 1.53
CHRNA1-204ENST00000409323 PRDM2Q13029 1718 aa24.5■■□□□ 1.51
CHRNA1-204ENST00000409323 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
CHRNA1-204ENST00000409323 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
CHRNA1-204ENST00000409323 PDS5BQ9NTI5 1447 aa24.43■■□□□ 1.5
CHRNA1-204ENST00000409323 ERCC6Q03468 1493 aa24.43■■□□□ 1.5
CHRNA1-204ENST00000409323 CEP164Q9UPV0 1460 aa24.34■■□□□ 1.49
CHRNA1-204ENST00000409323 ABCC8Q09428 1581 aa24.29■■□□□ 1.48
CHRNA1-204ENST00000409323 THOC2Q8NI27 1593 aaKnown RBP24.2■■□□□ 1.46
CHRNA1-204ENST00000409323 MRC2Q9UBG0 1479 aa24.19■■□□□ 1.46
CHRNA1-204ENST00000409323 URB2Q14146 1524 aaKnown RBP24.19■■□□□ 1.46
CHRNA1-204ENST00000409323 CUX1P39880 1505 aa24.13■■□□□ 1.45
CHRNA1-204ENST00000409323 WRNQ14191 1432 aaPredicted RBP eCLIP24.12■■□□□ 1.45
CHRNA1-204ENST00000409323 TOPBP1Q92547 1522 aa24.1■■□□□ 1.45
CHRNA1-204ENST00000409323 SYNJ1O43426 1573 aa24.1■■□□□ 1.45
CHRNA1-204ENST00000409323 WDR62O43379 1518 aa24.08■■□□□ 1.45
CHRNA1-204ENST00000409323 DNMBPQ6XZF7 1577 aa24.08■■□□□ 1.44
CHRNA1-204ENST00000409323 TOP2BQ02880 1626 aa24■■□□□ 1.43
CHRNA1-204ENST00000409323 BIVM-ERCC5R4GMW8 1640 aa23.98■■□□□ 1.43
CHRNA1-204ENST00000409323 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
CHRNA1-204ENST00000409323 FGD5Q6ZNL6 1462 aa23.97■■□□□ 1.43
CHRNA1-204ENST00000409323 TRIM41Q8WV44 630 aa23.94■■□□□ 1.42
CHRNA1-204ENST00000409323 POLA1P09884 1462 aaPredicted RBP23.93■■□□□ 1.42
CHRNA1-204ENST00000409323 RAD54L2Q9Y4B4 1467 aa23.9■■□□□ 1.42
CHRNA1-204ENST00000409323 CUX2O14529 1486 aa23.89■■□□□ 1.41
CHRNA1-204ENST00000409323 SOGA1O94964 1423 aa23.84■■□□□ 1.41
CHRNA1-204ENST00000409323 TARBP1Q13395 1621 aaKnown RBP23.79■■□□□ 1.4
CHRNA1-204ENST00000409323 IFT140Q96RY7 1462 aa23.76■■□□□ 1.39
CHRNA1-204ENST00000409323 ZNF608Q9ULD9 1512 aaPredicted RBP23.75■■□□□ 1.39
CHRNA1-204ENST00000409323 WDR97A6NE52 1622 aa23.72■■□□□ 1.39
CHRNA1-204ENST00000409323 TDRD9Q8NDG6 1382 aaKnown RBP23.71■■□□□ 1.39
CHRNA1-204ENST00000409323 ABCA10Q8WWZ4 1543 aa23.68■■□□□ 1.38
CHRNA1-204ENST00000409323 AQRO60306 1485 aaKnown RBP eCLIP23.67■■□□□ 1.38
CHRNA1-204ENST00000409323 RUSC2Q8N2Y8 1516 aa23.64■■□□□ 1.38
CHRNA1-204ENST00000409323 EIF4G3O43432 1585 aaKnown RBP23.64■■□□□ 1.37
CHRNA1-204ENST00000409323 FAM9AQ8IZU1 332 aaPredicted RBP23.6■■□□□ 1.37
CHRNA1-204ENST00000409323 ABCA5Q8WWZ7 1642 aa23.58■■□□□ 1.37
CHRNA1-204ENST00000409323 GAPVD1Q14C86 1478 aa23.57■■□□□ 1.36
CHRNA1-204ENST00000409323 KIF27Q86VH2 1401 aa23.55■■□□□ 1.36
CHRNA1-204ENST00000409323 PBRM1Q86U86 1689 aa23.53■■□□□ 1.36
CHRNA1-204ENST00000409323 GRIN2BQ13224 1484 aa23.46■■□□□ 1.35
CHRNA1-204ENST00000409323 SNAPC4Q5SXM2 1469 aa23.44■■□□□ 1.34
CHRNA1-204ENST00000409323 IGF1RP08069 1367 aa23.41■■□□□ 1.34
CHRNA1-204ENST00000409323 ERICH3Q5RHP9 1530 aa23.39■■□□□ 1.34
CHRNA1-204ENST00000409323 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
CHRNA1-204ENST00000409323 FBLN2P98095 1184 aa23.35■■□□□ 1.33
CHRNA1-204ENST00000409323 CSRNP3Q8WYN3 585 aa23.35■■□□□ 1.33
CHRNA1-204ENST00000409323 EEA1Q15075 1411 aa23.34■■□□□ 1.33
CHRNA1-204ENST00000409323 ADAMTS12P58397 1594 aa23.34■■□□□ 1.33
CHRNA1-204ENST00000409323 MAGI1Q96QZ7 1491 aaPredicted RBP23.32■■□□□ 1.32
CHRNA1-204ENST00000409323 CARMIL1Q5VZK9 1371 aa23.3■■□□□ 1.32
CHRNA1-204ENST00000409323 CHD1O14646 1710 aa23.29■■□□□ 1.32
CHRNA1-204ENST00000409323 CUL7Q14999 1698 aa23.29■■□□□ 1.32
CHRNA1-204ENST00000409323 FHAD1B1AJZ9 1412 aa23.27■■□□□ 1.32
CHRNA1-204ENST00000409323 CHMP7Q8WUX9 453 aaPredicted RBP23.27■■□□□ 1.32
CHRNA1-204ENST00000409323 SYNJ2O15056 1496 aa23.25■■□□□ 1.31
CHRNA1-204ENST00000409323 PRXQ9BXM0 1461 aa23.21■■□□□ 1.31
CHRNA1-204ENST00000409323 RAPGEF2Q9Y4G8 1499 aa23.2■■□□□ 1.3
CHRNA1-204ENST00000409323 GRIN2AQ12879 1464 aa23.19■■□□□ 1.3
CHRNA1-204ENST00000409323 KIF21BO75037 1637 aa23.14■■□□□ 1.29
CHRNA1-204ENST00000409323 LOC105371045A0A1W2PR82 267 aa23.11■■□□□ 1.29
CHRNA1-204ENST00000409323 CEP170Q5SW79 1584 aa23.1■■□□□ 1.29
CHRNA1-204ENST00000409323 GOLGA3Q08378 1498 aa23.06■■□□□ 1.28
CHRNA1-204ENST00000409323 UBTFP17480 764 aaKnown RBP23.06■■□□□ 1.28
CHRNA1-204ENST00000409323 OSCARQ8IYS5 282 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms