Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 LINC01089-204ENST00000535643 1014 ntTSL 1 (best)10.98□□□□□ -0.654e-7■■■■□ 22.7
LSM11P83369 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.94■■□□□ 1.261e-7■■■■□ 22.7
LSM11P83369 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.061e-7■■■■□ 22.7
LSM11P83369 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.3■□□□□ 0.681e-7■■■■□ 22.7
LSM11P83369 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.01■□□□□ 0.151e-7■■■■□ 22.7
LSM11P83369 TRAPPC9-215ENST00000524162 591 ntTSL 418.17■□□□□ 0.51e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-210ENST00000521667 2021 ntTSL 1 (best)17.18■□□□□ 0.341e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-211ENST00000521700 548 ntTSL 315.55■□□□□ 0.081e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-214ENST00000523777 705 ntTSL 314.2□□□□□ -0.141e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-213ENST00000522504 665 ntTSL 313.37□□□□□ -0.271e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC12.19□□□□□ -0.461e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-208ENST00000520857 3693 ntTSL 1 (best)12.15□□□□□ -0.461e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-206ENST00000519482 551 ntTSL 410.79□□□□□ -0.681e-6■■■■□ 22.6
LSM11P83369 TRAPPC9-202ENST00000438773 4297 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.721e-6■■■■□ 22.6
LSM11P83369 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.08■□□□□ 0.642e-6■■■■□ 22.6
LSM11P83369 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.442e-7■■■■□ 22.6
LSM11P83369 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.392e-9■■■■□ 22.6
LSM11P83369 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.562e-9■■■■□ 22.6
LSM11P83369 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.572e-6■■■■□ 22.5
LSM11P83369 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.392e-6■■■■□ 22.5
LSM11P83369 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.28■□□□□ 0.362e-6■■■■□ 22.5
LSM11P83369 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.68■■□□□ 1.221e-13■■■■□ 22.5
LSM11P83369 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.91■□□□□ 0.621e-13■■■■□ 22.5
LSM11P83369 SAE1-207ENST00000596995 2106 ntTSL 217.81■□□□□ 0.441e-13■■■■□ 22.5
LSM11P83369 SAE1-204ENST00000414294 2211 ntTSL 217.59■□□□□ 0.411e-13■■■■□ 22.5
LSM11P83369 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.41e-13■■■■□ 22.5
LSM11P83369 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.14■□□□□ 0.011e-13■■■■□ 22.5
LSM11P83369 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.171e-13■■■■□ 22.5
LSM11P83369 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.561e-13■■■■□ 22.5
LSM11P83369 MAP4-207ENST00000426837 8920 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.031e-13■■■■□ 22.5
LSM11P83369 MAP4-206ENST00000423088 899 ntTSL 38.19□□□□□ -1.11e-13■■■■□ 22.5
LSM11P83369 MAP4-216ENST00000633710 570 ntTSL 57.55□□□□□ -1.21e-13■■■■□ 22.5
LSM11P83369 MAP4-210ENST00000439356 2743 ntTSL 1 (best) BASIC7.45□□□□□ -1.221e-13■■■■□ 22.5
LSM11P83369 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC7.3□□□□□ -1.241e-13■■■■□ 22.5
LSM11P83369 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.396e-7■■■■□ 22.4
LSM11P83369 SFXN4-207ENST00000484960 555 ntTSL 314.89□□□□□ -0.036e-7■■■■□ 22.4
LSM11P83369 SFXN4-208ENST00000490417 952 ntTSL 214.89□□□□□ -0.036e-7■■■■□ 22.4
LSM11P83369 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.086e-7■■■■□ 22.4
LSM11P83369 APOLD1-203ENST00000534843 2375 ntTSL 214.21□□□□□ -0.136e-7■■■■□ 22.4
LSM11P83369 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.446e-7■■■■□ 22.4
LSM11P83369 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.446e-7■■■■□ 22.4
LSM11P83369 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.466e-7■■■■□ 22.4
LSM11P83369 NPSR1-AS1-207ENST00000539747 830 ntTSL 212.1□□□□□ -0.476e-7■■■■□ 22.4
LSM11P83369 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC10.58□□□□□ -0.726e-7■■■■□ 22.4
LSM11P83369 TMEM219-206ENST00000569481 443 ntTSL 310.32□□□□□ -0.766e-7■■■■□ 22.4
LSM11P83369 TMEM219-207ENST00000570255 926 ntTSL 210.26□□□□□ -0.776e-7■■■■□ 22.4
LSM11P83369 DDX47-206ENST00000541537 1517 ntTSL 1 (best)9.99□□□□□ -0.816e-7■■■■□ 22.4
LSM11P83369 DDX47-202ENST00000358007 1817 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.846e-7■■■■□ 22.4
LSM11P83369 DDX47-210ENST00000544400 597 ntTSL 39.03□□□□□ -0.966e-7■■■■□ 22.4
LSM11P83369 DDX47-212ENST00000545038 2357 ntTSL 1 (best)7.56□□□□□ -1.26e-7■■■■□ 22.4
LSM11P83369 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.564e-10■■■■□ 22.4
LSM11P83369 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.87□□□□□ -1.636e-7■■■■□ 22.4
LSM11P83369 DDX47-207ENST00000542123 2689 ntTSL 1 (best)3.91□□□□□ -1.786e-7■■■■□ 22.4
LSM11P83369 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.73■□□□□ 0.912e-6■■■■□ 22.4
LSM11P83369 AC004980.1-202ENST00000450661 962 ntTSL 1 (best)20.71■□□□□ 0.912e-6■■■■□ 22.4
LSM11P83369 AC004980.1-203ENST00000423084 748 ntTSL 319.87■□□□□ 0.772e-6■■■■□ 22.4
LSM11P83369 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.32■■□□□ 1.326e-7■■■■□ 22.4
LSM11P83369 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.56■■□□□ 1.046e-7■■■■□ 22.4
LSM11P83369 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.956e-7■■■■□ 22.4
LSM11P83369 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.94■□□□□ 0.946e-7■■■■□ 22.4
LSM11P83369 TANGO2-215ENST00000450019 1689 ntTSL 520.7■□□□□ 0.916e-7■■■■□ 22.4
LSM11P83369 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.31■□□□□ 0.846e-7■■■■□ 22.4
LSM11P83369 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.6■□□□□ 0.736e-7■■■■□ 22.4
LSM11P83369 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.59■□□□□ 0.736e-7■■■■□ 22.4
LSM11P83369 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.91■□□□□ 0.626e-7■■■■□ 22.4
LSM11P83369 TANGO2-203ENST00000399807 2241 ntTSL 514.84□□□□□ -0.036e-7■■■■□ 22.4
LSM11P83369 TANGO2-226ENST00000490583 888 ntTSL 314.72□□□□□ -0.056e-7■■■■□ 22.4
LSM11P83369 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.56□□□□□ -0.246e-7■■■■□ 22.4
LSM11P83369 TANGO2-213ENST00000444651 847 ntTSL 312.34□□□□□ -0.436e-7■■■■□ 22.4
LSM11P83369 SCRIB-204ENST00000525051 1685 ntTSL 1 (best)17.55■□□□□ 0.47e-9■■■■□ 22.4
LSM11P83369 SCRIB-205ENST00000526832 2189 ntTSL 1 (best)17.54■□□□□ 0.47e-9■■■■□ 22.4
LSM11P83369 SCRIB-206ENST00000531163 538 ntTSL 214.38□□□□□ -0.117e-9■■■■□ 22.4
LSM11P83369 UBE2J2-219ENST00000503294 814 ntTSL 418.29■□□□□ 0.529e-7■■■■□ 22.3
LSM11P83369 UBE2J2-206ENST00000422076 643 ntTSL 518.29■□□□□ 0.529e-7■■■■□ 22.3
LSM11P83369 UBE2J2-217ENST00000491779 611 ntTSL 216.26■□□□□ 0.199e-7■■■■□ 22.3
LSM11P83369 UBE2J2-211ENST00000466752 886 ntTSL 316.26■□□□□ 0.199e-7■■■■□ 22.3
LSM11P83369 UBE2J2-218ENST00000502382 530 ntTSL 414.03□□□□□ -0.169e-7■■■■□ 22.3
LSM11P83369 UBE2J2-215ENST00000477894 767 ntTSL 513.82□□□□□ -0.29e-7■■■■□ 22.3
LSM11P83369 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.41e-11■■■■□ 22.3
LSM11P83369 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.393e-6■■■■□ 22.3
LSM11P83369 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.373e-6■■■■□ 22.3
LSM11P83369 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.373e-6■■■■□ 22.3
LSM11P83369 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.213e-6■■■■□ 22.3
LSM11P83369 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.793e-6■■■■□ 22.3
LSM11P83369 COMTD1-202ENST00000460899 1094 ntTSL 218.84■□□□□ 0.613e-6■■■■□ 22.3
LSM11P83369 COMTD1-204ENST00000470947 796 ntTSL 218.84■□□□□ 0.613e-6■■■■□ 22.3
LSM11P83369 COMTD1-203ENST00000469299 871 ntTSL 318.84■□□□□ 0.613e-6■■■■□ 22.3
LSM11P83369 AL807752.6-201ENST00000625047 746 ntAPPRIS ALT2 TSL 318.11■□□□□ 0.493e-6■■■■□ 22.3
LSM11P83369 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.483e-6■■■■□ 22.3
LSM11P83369 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.416e-9■■■■□ 22.3
LSM11P83369 COMTD1-207ENST00000494596 539 ntTSL 217.07■□□□□ 0.323e-6■■■■□ 22.3
LSM11P83369 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.226e-9■■■■□ 22.3
LSM11P83369 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.183e-6■■■■□ 22.3
LSM11P83369 POLE-204ENST00000441786 556 ntTSL 516.12■□□□□ 0.173e-6■■■■□ 22.3
LSM11P83369 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.94■□□□□ 0.143e-6■■■■□ 22.3
LSM11P83369 NPDC1-206ENST00000496498 383 ntTSL 215.75■□□□□ 0.113e-6■■■■□ 22.3
LSM11P83369 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.031e-11■■■■□ 22.3
LSM11P83369 CSNK1G2-209ENST00000591752 648 ntTSL 514.73□□□□□ -0.052e-6■■■■□ 22.3
LSM11P83369 FAM95C-204ENST00000637322 930 ntAPPRIS ALT2 TSL 514.73□□□□□ -0.053e-6■■■■□ 22.3
LSM11P83369 CARM1-203ENST00000586221 2766 ntTSL 1 (best)14.72□□□□□ -0.053e-6■■■■□ 22.3
Retrieved 100 of 11,495 protein–RNA pairs in 56.4 ms