RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 NISCHQ9Y2I1 1504 aa42.8■■■■■ 4.44
HMGA1-201ENST00000311487 CCDC180Q9P1Z9 1646 aa37.59■■■■□ 3.61
HMGA1-201ENST00000311487 ABCC9O60706 1549 aa36.61■■■■□ 3.45
HMGA1-201ENST00000311487 DCAF8L2P0C7V8 631 aa35.96■■■■□ 3.35
HMGA1-201ENST00000311487 ZCCHC6Q5VYS8 1495 aaKnown RBP35.74■■■■□ 3.31
HMGA1-201ENST00000311487 NACADO15069 1562 aa35.26■■■■□ 3.24
HMGA1-201ENST00000311487 DCAF1Q9Y4B6 1507 aa35.22■■■■□ 3.23
HMGA1-201ENST00000311487 RB1CC1Q8TDY2 1594 aa35.21■■■■□ 3.23
HMGA1-201ENST00000311487 MYO15BQ96JP2 1530 aa35.1■■■■□ 3.21
HMGA1-201ENST00000311487 SCRIBQ14160 1630 aa34.68■■■■□ 3.14
HMGA1-201ENST00000311487 SHROOM4Q9ULL8 1493 aa34.6■■■■□ 3.13
HMGA1-201ENST00000311487 UNC13AQ9UPW8 1703 aa34.51■■■■□ 3.12
HMGA1-201ENST00000311487 PABPN1Q86U42 306 aaKnown RBP eCLIP34.46■■■■□ 3.11
HMGA1-201ENST00000311487 BICRAQ9NZM4 1560 aa34.21■■■■□ 3.07
HMGA1-201ENST00000311487 CECR2Q9BXF3 1484 aa33.45■■■□□ 2.95
HMGA1-201ENST00000311487 EIF4G1Q04637 1599 aaKnown RBP33.26■■■□□ 2.91
HMGA1-201ENST00000311487 DNAJC5BQ9UF47 199 aa33.19■■■□□ 2.9
HMGA1-201ENST00000311487 MROH2BQ7Z745 1585 aa33.11■■■□□ 2.89
HMGA1-201ENST00000311487 SMARCA4P51532 1647 aa33.08■■■□□ 2.89
HMGA1-201ENST00000311487 BAZ1AQ9NRL2 1556 aaPredicted RBP33.08■■■□□ 2.89
HMGA1-201ENST00000311487 CC2D2AQ9P2K1 1620 aa33.02■■■□□ 2.88
HMGA1-201ENST00000311487 RSF1Q96T23 1441 aaPredicted RBP32.92■■■□□ 2.86
HMGA1-201ENST00000311487 SUPT5HO00267 1087 aaKnown RBP32.85■■■□□ 2.85
HMGA1-201ENST00000311487 WIZO95785 1651 aa32.81■■■□□ 2.84
HMGA1-201ENST00000311487 ATAD2BQ9ULI0 1458 aa32.78■■■□□ 2.84
HMGA1-201ENST00000311487 SMARCA2P51531 1590 aa32.66■■■□□ 2.82
HMGA1-201ENST00000311487 PEG3Q9GZU2 1588 aa32.61■■■□□ 2.81
HMGA1-201ENST00000311487 NCAPD3P42695 1498 aa32.59■■■□□ 2.81
HMGA1-201ENST00000311487 BAZ1BQ9UIG0 1483 aaKnown RBP32.56■■■□□ 2.8
HMGA1-201ENST00000311487 HMGXB3Q12766 1538 aa32.42■■■□□ 2.78
HMGA1-201ENST00000311487 TOP2AP11388 1531 aaKnown RBP32.33■■■□□ 2.77
HMGA1-201ENST00000311487 CCDC88BA6NC98 1476 aa32.08■■■□□ 2.73
HMGA1-201ENST00000311487 NESP48681 1621 aa31.88■■■□□ 2.69
HMGA1-201ENST00000311487 CADPSQ9ULU8 1353 aa31.75■■■□□ 2.67
HMGA1-201ENST00000311487 CFTRP13569 1480 aa31.65■■■□□ 2.66
HMGA1-201ENST00000311487 LAMC3Q9Y6N6 1575 aa31.6■■■□□ 2.65
HMGA1-201ENST00000311487 ERCC6Q03468 1493 aa31.44■■■□□ 2.62
HMGA1-201ENST00000311487 PDS5BQ9NTI5 1447 aa31.44■■■□□ 2.62
HMGA1-201ENST00000311487 FANCD2Q9BXW9 1451 aa31.42■■■□□ 2.62
HMGA1-201ENST00000311487 KIF21AQ7Z4S6 1674 aa31.39■■■□□ 2.62
HMGA1-201ENST00000311487 PRDM2Q13029 1718 aa31.34■■■□□ 2.61
HMGA1-201ENST00000311487 CEP164Q9UPV0 1460 aa31.28■■■□□ 2.6
HMGA1-201ENST00000311487 ABCC8Q09428 1581 aa31.19■■■□□ 2.58
HMGA1-201ENST00000311487 MRC2Q9UBG0 1479 aa31.09■■■□□ 2.57
HMGA1-201ENST00000311487 URB2Q14146 1524 aaKnown RBP31.09■■■□□ 2.57
HMGA1-201ENST00000311487 THOC2Q8NI27 1593 aaKnown RBP31.05■■■□□ 2.56
HMGA1-201ENST00000311487 WRNQ14191 1432 aaPredicted RBP eCLIP31.01■■■□□ 2.553e-7■□□□□ 10.7
HMGA1-201ENST00000311487 CUX1P39880 1505 aa30.99■■■□□ 2.55
HMGA1-201ENST00000311487 TOPBP1Q92547 1522 aa30.97■■■□□ 2.55
HMGA1-201ENST00000311487 SYNJ1O43426 1573 aa30.93■■■□□ 2.54
HMGA1-201ENST00000311487 WDR62O43379 1518 aa30.93■■■□□ 2.54
HMGA1-201ENST00000311487 DNMBPQ6XZF7 1577 aa30.91■■■□□ 2.54
HMGA1-201ENST00000311487 CHIC1Q5VXU3 224 aa30.86■■■□□ 2.53
HMGA1-201ENST00000311487 TRIM41Q8WV44 630 aa30.85■■■□□ 2.53
HMGA1-201ENST00000311487 FGD5Q6ZNL6 1462 aa30.8■■■□□ 2.52
HMGA1-201ENST00000311487 TOP2BQ02880 1626 aa30.8■■■□□ 2.52
HMGA1-201ENST00000311487 POLA1P09884 1462 aaPredicted RBP30.77■■■□□ 2.52
HMGA1-201ENST00000311487 RAD54L2Q9Y4B4 1467 aa30.75■■■□□ 2.51
HMGA1-201ENST00000311487 BIVM-ERCC5R4GMW8 1640 aa30.74■■■□□ 2.51
HMGA1-201ENST00000311487 CUX2O14529 1486 aa30.72■■■□□ 2.51
HMGA1-201ENST00000311487 SOGA1O94964 1423 aa30.69■■■□□ 2.5
HMGA1-201ENST00000311487 ZNF608Q9ULD9 1512 aaPredicted RBP30.56■■■□□ 2.48
HMGA1-201ENST00000311487 IFT140Q96RY7 1462 aa30.55■■■□□ 2.48
HMGA1-201ENST00000311487 TDRD9Q8NDG6 1382 aaKnown RBP30.55■■■□□ 2.48
HMGA1-201ENST00000311487 TARBP1Q13395 1621 aaKnown RBP30.54■■■□□ 2.48
HMGA1-201ENST00000311487 AQRO60306 1485 aaKnown RBP eCLIP30.49■■■□□ 2.472e-7■■■■■ 51.4
HMGA1-201ENST00000311487 ABCA10Q8WWZ4 1543 aa30.42■■■□□ 2.46
HMGA1-201ENST00000311487 FAM9AQ8IZU1 332 aaPredicted RBP30.41■■■□□ 2.46
HMGA1-201ENST00000311487 RUSC2Q8N2Y8 1516 aa30.41■■■□□ 2.46
HMGA1-201ENST00000311487 WDR97A6NE52 1622 aa30.38■■■□□ 2.45
HMGA1-201ENST00000311487 EIF4G3O43432 1585 aaKnown RBP30.34■■■□□ 2.45
HMGA1-201ENST00000311487 GAPVD1Q14C86 1478 aa30.3■■■□□ 2.44
HMGA1-201ENST00000311487 KIF27Q86VH2 1401 aa30.27■■■□□ 2.44
HMGA1-201ENST00000311487 ABCA5Q8WWZ7 1642 aa30.25■■■□□ 2.43
HMGA1-201ENST00000311487 EHMT2Q96KQ7 1210 aa30.16■■■□□ 2.42
HMGA1-201ENST00000311487 GRIN2BQ13224 1484 aa30.16■■■□□ 2.42
HMGA1-201ENST00000311487 IGF1RP08069 1367 aa30.15■■■□□ 2.42
HMGA1-201ENST00000311487 PBRM1Q86U86 1689 aa30.15■■■□□ 2.42
HMGA1-201ENST00000311487 FBLN2P98095 1184 aa30.14■■■□□ 2.42
HMGA1-201ENST00000311487 SNAPC4Q5SXM2 1469 aa30.13■■■□□ 2.41
HMGA1-201ENST00000311487 CSRNP3Q8WYN3 585 aa30.07■■■□□ 2.4
HMGA1-201ENST00000311487 ERICH3Q5RHP9 1530 aa30.03■■■□□ 2.4
HMGA1-201ENST00000311487 CHMP7Q8WUX9 453 aaPredicted RBP30■■■□□ 2.39
HMGA1-201ENST00000311487 CARMIL1Q5VZK9 1371 aa29.98■■■□□ 2.39
HMGA1-201ENST00000311487 MAGI1Q96QZ7 1491 aaPredicted RBP29.97■■■□□ 2.39
HMGA1-201ENST00000311487 EEA1Q15075 1411 aa29.95■■■□□ 2.39
HMGA1-201ENST00000311487 ADAMTS12P58397 1594 aa29.93■■■□□ 2.38
HMGA1-201ENST00000311487 FHAD1B1AJZ9 1412 aa29.92■■■□□ 2.38
HMGA1-201ENST00000311487 SYNJ2O15056 1496 aa29.9■■■□□ 2.38
HMGA1-201ENST00000311487 CHD1O14646 1710 aa29.87■■■□□ 2.37
HMGA1-201ENST00000311487 CUL7Q14999 1698 aa29.86■■■□□ 2.37
HMGA1-201ENST00000311487 PRXQ9BXM0 1461 aa29.83■■■□□ 2.37
HMGA1-201ENST00000311487 RAPGEF2Q9Y4G8 1499 aa29.82■■■□□ 2.36
HMGA1-201ENST00000311487 GRIN2AQ12879 1464 aa29.81■■■□□ 2.36
HMGA1-201ENST00000311487 LOC105371045A0A1W2PR82 267 aa29.8■■■□□ 2.36
HMGA1-201ENST00000311487 OSCARQ8IYS5 282 aa29.73■■■□□ 2.35
HMGA1-201ENST00000311487 UBTFP17480 764 aaKnown RBP29.71■■■□□ 2.35
HMGA1-201ENST00000311487 RANGAP1P46060 587 aaPredicted RBP29.69■■■□□ 2.34
HMGA1-201ENST00000311487 CEP170Q5SW79 1584 aa29.67■■■□□ 2.34
HMGA1-201ENST00000311487 KIF21BO75037 1637 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms