RNA–Protein interactions for RNA: ENST00000524162.5

TRAPPC9-215, Transcript of trafficking protein particle complex 9, humanhuman

TSL 4

Gene TRAPPC9, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-215ENST00000524162 NISCHQ9Y2I1 1504 aa51.18■■■■■ 5.78
TRAPPC9-215ENST00000524162 CCDC180Q9P1Z9 1646 aa45.69■■■■■ 4.9
TRAPPC9-215ENST00000524162 ABCC9O60706 1549 aa44.58■■■■■ 4.73
TRAPPC9-215ENST00000524162 RB1CC1Q8TDY2 1594 aa43■■■■■ 4.47
TRAPPC9-215ENST00000524162 NACADO15069 1562 aa42.97■■■■■ 4.47
TRAPPC9-215ENST00000524162 MYO15BQ96JP2 1530 aa42.78■■■■■ 4.44
TRAPPC9-215ENST00000524162 ZCCHC6Q5VYS8 1495 aaKnown RBP42.61■■■■■ 4.41
TRAPPC9-215ENST00000524162 DCAF8L2P0C7V8 631 aa42.53■■■■■ 4.4
TRAPPC9-215ENST00000524162 DCAF1Q9Y4B6 1507 aa42.5■■■■■ 4.39
TRAPPC9-215ENST00000524162 UNC13AQ9UPW8 1703 aa42.03■■■■■ 4.32
TRAPPC9-215ENST00000524162 BICRAQ9NZM4 1560 aa41.67■■■■■ 4.26
TRAPPC9-215ENST00000524162 PABPN1Q86U42 306 aaKnown RBP eCLIP41.56■■■■■ 4.24
TRAPPC9-215ENST00000524162 SCRIBQ14160 1630 aa41.43■■■■■ 4.22
TRAPPC9-215ENST00000524162 SHROOM4Q9ULL8 1493 aa41.42■■■■■ 4.22
TRAPPC9-215ENST00000524162 DNAJC5BQ9UF47 199 aa41.04■■■■■ 4.16
TRAPPC9-215ENST00000524162 EIF4G1Q04637 1599 aaKnown RBP40.58■■■■■ 4.09
TRAPPC9-215ENST00000524162 CC2D2AQ9P2K1 1620 aa40.42■■■■■ 4.06
TRAPPC9-215ENST00000524162 CECR2Q9BXF3 1484 aa40.15■■■■■ 4.02
TRAPPC9-215ENST00000524162 SMARCA4P51532 1647 aa39.74■■■■□ 3.95
TRAPPC9-215ENST00000524162 BAZ1AQ9NRL2 1556 aaPredicted RBP39.72■■■■□ 3.95
TRAPPC9-215ENST00000524162 NCAPD3P42695 1498 aa39.63■■■■□ 3.94
TRAPPC9-215ENST00000524162 SMARCA2P51531 1590 aa39.57■■■■□ 3.92
TRAPPC9-215ENST00000524162 ATAD2BQ9ULI0 1458 aa39.55■■■■□ 3.92
TRAPPC9-215ENST00000524162 PEG3Q9GZU2 1588 aa39.48■■■■□ 3.91
TRAPPC9-215ENST00000524162 HMGXB3Q12766 1538 aa39.44■■■■□ 3.9
TRAPPC9-215ENST00000524162 MROH2BQ7Z745 1585 aa39.36■■■■□ 3.89
TRAPPC9-215ENST00000524162 BAZ1BQ9UIG0 1483 aaKnown RBP39.19■■■■□ 3.86
TRAPPC9-215ENST00000524162 WIZO95785 1651 aa38.93■■■■□ 3.82
TRAPPC9-215ENST00000524162 RSF1Q96T23 1441 aaPredicted RBP38.89■■■■□ 3.82
TRAPPC9-215ENST00000524162 LAMC3Q9Y6N6 1575 aa38.61■■■■□ 3.77
TRAPPC9-215ENST00000524162 TOP2AP11388 1531 aaKnown RBP38.58■■■■□ 3.77
TRAPPC9-215ENST00000524162 NESP48681 1621 aa38.53■■■■□ 3.76
TRAPPC9-215ENST00000524162 ERCC6Q03468 1493 aa38.47■■■■□ 3.75
TRAPPC9-215ENST00000524162 CADPSQ9ULU8 1353 aa38.41■■■■□ 3.74
TRAPPC9-215ENST00000524162 PDS5BQ9NTI5 1447 aa38.31■■■■□ 3.72
TRAPPC9-215ENST00000524162 CUX2O14529 1486 aa38.28■■■■□ 3.72
TRAPPC9-215ENST00000524162 CFTRP13569 1480 aa38.18■■■■□ 3.7
TRAPPC9-215ENST00000524162 KIF21AQ7Z4S6 1674 aa38.17■■■■□ 3.7
TRAPPC9-215ENST00000524162 THOC2Q8NI27 1593 aaKnown RBP38.11■■■■□ 3.69
TRAPPC9-215ENST00000524162 CCDC88BA6NC98 1476 aa38.07■■■■□ 3.68
TRAPPC9-215ENST00000524162 PRDM2Q13029 1718 aa37.96■■■■□ 3.67
TRAPPC9-215ENST00000524162 FANCD2Q9BXW9 1451 aa37.92■■■■□ 3.66
TRAPPC9-215ENST00000524162 CEP164Q9UPV0 1460 aa37.9■■■■□ 3.66
TRAPPC9-215ENST00000524162 MRC2Q9UBG0 1479 aa37.9■■■■□ 3.66
TRAPPC9-215ENST00000524162 WDR62O43379 1518 aa37.82■■■■□ 3.65
TRAPPC9-215ENST00000524162 SUPT5HO00267 1087 aaKnown RBP37.57■■■■□ 3.6
TRAPPC9-215ENST00000524162 URB2Q14146 1524 aaKnown RBP37.54■■■■□ 3.6
TRAPPC9-215ENST00000524162 ABCC8Q09428 1581 aa37.43■■■■□ 3.58
TRAPPC9-215ENST00000524162 TOPBP1Q92547 1522 aa37.31■■■■□ 3.56
TRAPPC9-215ENST00000524162 DNMBPQ6XZF7 1577 aa37.29■■■■□ 3.56
TRAPPC9-215ENST00000524162 DNAJC5Q9H3Z4 198 aa37.21■■■■□ 3.55
TRAPPC9-215ENST00000524162 IFT140Q96RY7 1462 aa37.15■■■■□ 3.54
TRAPPC9-215ENST00000524162 POLA1P09884 1462 aaPredicted RBP36.98■■■■□ 3.51
TRAPPC9-215ENST00000524162 TARBP1Q13395 1621 aaKnown RBP36.96■■■■□ 3.51
TRAPPC9-215ENST00000524162 CUX1P39880 1505 aa36.95■■■■□ 3.51
TRAPPC9-215ENST00000524162 ZNF608Q9ULD9 1512 aaPredicted RBP36.89■■■■□ 3.5
TRAPPC9-215ENST00000524162 FGD5Q6ZNL6 1462 aa36.84■■■■□ 3.49
TRAPPC9-215ENST00000524162 SOGA1O94964 1423 aa36.81■■■■□ 3.48
TRAPPC9-215ENST00000524162 WDR97A6NE52 1622 aa36.81■■■■□ 3.48
TRAPPC9-215ENST00000524162 EIF4G3O43432 1585 aaKnown RBP36.8■■■■□ 3.48
TRAPPC9-215ENST00000524162 RAD54L2Q9Y4B4 1467 aa36.73■■■■□ 3.47
TRAPPC9-215ENST00000524162 BIVM-ERCC5R4GMW8 1640 aa36.68■■■■□ 3.46
TRAPPC9-215ENST00000524162 TOP2BQ02880 1626 aa36.67■■■■□ 3.46
TRAPPC9-215ENST00000524162 WRNQ14191 1432 aaPredicted RBP eCLIP36.67■■■■□ 3.46
TRAPPC9-215ENST00000524162 AQRO60306 1485 aaKnown RBP eCLIP36.65■■■■□ 3.46
TRAPPC9-215ENST00000524162 OSCARQ8IYS5 282 aa36.58■■■■□ 3.45
TRAPPC9-215ENST00000524162 ABCA10Q8WWZ4 1543 aa36.56■■■■□ 3.44
TRAPPC9-215ENST00000524162 SYNJ1O43426 1573 aa36.56■■■■□ 3.44
TRAPPC9-215ENST00000524162 TDRD9Q8NDG6 1382 aaKnown RBP36.54■■■■□ 3.44
TRAPPC9-215ENST00000524162 GRIN2BQ13224 1484 aa36.44■■■■□ 3.42
TRAPPC9-215ENST00000524162 ABCA5Q8WWZ7 1642 aa36.42■■■■□ 3.42
TRAPPC9-215ENST00000524162 GAPVD1Q14C86 1478 aa36.41■■■■□ 3.42
TRAPPC9-215ENST00000524162 MAGI1Q96QZ7 1491 aaPredicted RBP36.41■■■■□ 3.42
TRAPPC9-215ENST00000524162 CHD1O14646 1710 aa36.37■■■■□ 3.41
TRAPPC9-215ENST00000524162 PBRM1Q86U86 1689 aa36.35■■■■□ 3.41
TRAPPC9-215ENST00000524162 SNAPC4Q5SXM2 1469 aa36.33■■■■□ 3.41
TRAPPC9-215ENST00000524162 SYNJ2O15056 1496 aa36.24■■■■□ 3.39
TRAPPC9-215ENST00000524162 ERICH3Q5RHP9 1530 aa36.15■■■■□ 3.38
TRAPPC9-215ENST00000524162 FBLN2P98095 1184 aa36.15■■■■□ 3.38
TRAPPC9-215ENST00000524162 CHMP7Q8WUX9 453 aaPredicted RBP36.14■■■■□ 3.38
TRAPPC9-215ENST00000524162 ADAMTS12P58397 1594 aa36.06■■■■□ 3.36
TRAPPC9-215ENST00000524162 CLASP1Q7Z460 1538 aa36.03■■■■□ 3.36
TRAPPC9-215ENST00000524162 FHAD1B1AJZ9 1412 aa36■■■■□ 3.35
TRAPPC9-215ENST00000524162 RIMBP3CA6NJZ7 1639 aa35.99■■■■□ 3.35
TRAPPC9-215ENST00000524162 RIMBP3BA6NNM3 1639 aa35.99■■■■□ 3.35
TRAPPC9-215ENST00000524162 RIMBP3Q9UFD9 1639 aa35.99■■■■□ 3.35
TRAPPC9-215ENST00000524162 ARHGEF11O15085 1522 aa35.98■■■■□ 3.35
TRAPPC9-215ENST00000524162 GRIN2AQ12879 1464 aa35.97■■■■□ 3.35
TRAPPC9-215ENST00000524162 KIF27Q86VH2 1401 aa35.94■■■■□ 3.34
TRAPPC9-215ENST00000524162 NUP160Q12769 1436 aa35.85■■■■□ 3.33
TRAPPC9-215ENST00000524162 IGF1RP08069 1367 aa35.79■■■■□ 3.32
TRAPPC9-215ENST00000524162 CUL7Q14999 1698 aa35.79■■■■□ 3.32
TRAPPC9-215ENST00000524162 CEP170Q5SW79 1584 aa35.76■■■■□ 3.32
TRAPPC9-215ENST00000524162 TRIM41Q8WV44 630 aa35.69■■■■□ 3.3
TRAPPC9-215ENST00000524162 ARAP1Q96P48 1450 aa35.66■■■■□ 3.3
TRAPPC9-215ENST00000524162 SHROOM2Q13796 1616 aa35.64■■■■□ 3.3
TRAPPC9-215ENST00000524162 CARMIL1Q5VZK9 1371 aa35.56■■■■□ 3.28
TRAPPC9-215ENST00000524162 CYB5RLQ6IPT4 315 aa35.55■■■■□ 3.28
TRAPPC9-215ENST00000524162 RUSC2Q8N2Y8 1516 aa35.53■■■■□ 3.28
TRAPPC9-215ENST00000524162 KIAA0586Q9BVV6 1533 aa35.47■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms