RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 NISCHQ9Y2I1 1504 aa38.72■■■■□ 3.79
HMGA1-205ENST00000447654 CCDC180Q9P1Z9 1646 aa33.17■■■□□ 2.9
HMGA1-205ENST00000447654 PELP1Q8IZL8 1130 aaKnown RBP32.71■■■□□ 2.83
HMGA1-205ENST00000447654 ZCCHC6Q5VYS8 1495 aaKnown RBP32.66■■■□□ 2.82
HMGA1-205ENST00000447654 SHROOM4Q9ULL8 1493 aa32.53■■■□□ 2.8
HMGA1-205ENST00000447654 HRCP23327 699 aa32.5■■■□□ 2.79
HMGA1-205ENST00000447654 DCAF8L2P0C7V8 631 aa32.1■■■□□ 2.73
HMGA1-205ENST00000447654 MYT1Q01538 1121 aa31.83■■■□□ 2.69
HMGA1-205ENST00000447654 DCAF1Q9Y4B6 1507 aa31.78■■■□□ 2.68
HMGA1-205ENST00000447654 SUPT5HO00267 1087 aaKnown RBP31.6■■■□□ 2.65
HMGA1-205ENST00000447654 PPARGC1BQ86YN6 1023 aaKnown RBP31.23■■■□□ 2.59
HMGA1-205ENST00000447654 PCGF6Q9BYE7 350 aa31.16■■■□□ 2.58
HMGA1-205ENST00000447654 ABCC9O60706 1549 aa31.16■■■□□ 2.58
HMGA1-205ENST00000447654 MYO15BQ96JP2 1530 aa31.07■■■□□ 2.56
HMGA1-205ENST00000447654 SCRIBQ14160 1630 aa30.98■■■□□ 2.55
HMGA1-205ENST00000447654 SCAF1Q9H7N4 1312 aaKnown RBP30.85■■■□□ 2.53
HMGA1-205ENST00000447654 NACADO15069 1562 aa30.77■■■□□ 2.52
HMGA1-205ENST00000447654 ZEB1P37275 1124 aaPredicted RBP30.66■■■□□ 2.5
HMGA1-205ENST00000447654 CHIC1Q5VXU3 224 aa30.59■■■□□ 2.49
HMGA1-205ENST00000447654 RSF1Q96T23 1441 aaPredicted RBP30.43■■■□□ 2.46
HMGA1-205ENST00000447654 TRIM26Q12899 539 aaPredicted RBP30.41■■■□□ 2.46
HMGA1-205ENST00000447654 RB1CC1Q8TDY2 1594 aa30.37■■■□□ 2.45
HMGA1-205ENST00000447654 CECR2Q9BXF3 1484 aa30.26■■■□□ 2.43
HMGA1-205ENST00000447654 TTBK1Q5TCY1 1321 aaPredicted RBP30.16■■■□□ 2.42
HMGA1-205ENST00000447654 ACIN1Q9UKV3 1341 aaKnown RBP30.12■■■□□ 2.41
HMGA1-205ENST00000447654 MROH2BQ7Z745 1585 aa30.09■■■□□ 2.41
HMGA1-205ENST00000447654 UNC13AQ9UPW8 1703 aa30■■■□□ 2.39
HMGA1-205ENST00000447654 WIZO95785 1651 aa29.89■■■□□ 2.38
HMGA1-205ENST00000447654 CENPBP07199 599 aaPredicted RBP29.77■■■□□ 2.36
HMGA1-205ENST00000447654 NEUROD1Q13562 356 aa29.77■■■□□ 2.36
HMGA1-205ENST00000447654 BAZ1AQ9NRL2 1556 aaPredicted RBP29.74■■■□□ 2.35
HMGA1-205ENST00000447654 GTF3C3Q9Y5Q9 886 aa29.7■■■□□ 2.34
HMGA1-205ENST00000447654 PABPN1Q86U42 306 aaKnown RBP eCLIP29.68■■■□□ 2.34
HMGA1-205ENST00000447654 BICRAQ9NZM4 1560 aa29.67■■■□□ 2.34
HMGA1-205ENST00000447654 LOC105371045A0A1W2PR82 267 aa29.6■■■□□ 2.33
HMGA1-205ENST00000447654 SMARCA4P51532 1647 aa29.6■■■□□ 2.33
HMGA1-205ENST00000447654 TRIM41Q8WV44 630 aa29.47■■■□□ 2.31
HMGA1-205ENST00000447654 TOP2AP11388 1531 aaKnown RBP29.39■■■□□ 2.3
HMGA1-205ENST00000447654 DNAJC5BQ9UF47 199 aa29.35■■■□□ 2.29
HMGA1-205ENST00000447654 EIF4G1Q04637 1599 aaKnown RBP29.3■■■□□ 2.28
HMGA1-205ENST00000447654 CCDC88BA6NC98 1476 aa29.27■■■□□ 2.28
HMGA1-205ENST00000447654 SMARCA2P51531 1590 aa29.24■■■□□ 2.27
HMGA1-205ENST00000447654 FAM9AQ8IZU1 332 aaPredicted RBP29.21■■■□□ 2.27
HMGA1-205ENST00000447654 DIEXFQ68CQ4 756 aaKnown RBP29.18■■■□□ 2.26
HMGA1-205ENST00000447654 PEG3Q9GZU2 1588 aa29.09■■■□□ 2.25
HMGA1-205ENST00000447654 ABCC8Q09428 1581 aa29.01■■■□□ 2.24
HMGA1-205ENST00000447654 BCL11AQ9H165 835 aa28.98■■■□□ 2.23
HMGA1-205ENST00000447654 ATAD2BQ9ULI0 1458 aa28.98■■■□□ 2.23
HMGA1-205ENST00000447654 EHMT2Q96KQ7 1210 aa28.96■■■□□ 2.23
HMGA1-205ENST00000447654 CLSPNQ9HAW4 1339 aa28.83■■■□□ 2.21
HMGA1-205ENST00000447654 BAZ1BQ9UIG0 1483 aaKnown RBP28.82■■■□□ 2.2
HMGA1-205ENST00000447654 CCER1Q8TC90 406 aaPredicted RBP28.78■■■□□ 2.2
HMGA1-205ENST00000447654 ANP32EQ9BTT0 268 aa28.78■■■□□ 2.2
HMGA1-205ENST00000447654 SOGA1O94964 1423 aa28.63■■■□□ 2.17
HMGA1-205ENST00000447654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.63■■■□□ 2.17
HMGA1-205ENST00000447654 ZNF316A6NFI3 1004 aaPredicted RBP28.6■■■□□ 2.17
HMGA1-205ENST00000447654 RUSC2Q8N2Y8 1516 aa28.55■■■□□ 2.16
HMGA1-205ENST00000447654 WRNQ14191 1432 aaPredicted RBP eCLIP28.55■■■□□ 2.163e-7■□□□□ 10.7
HMGA1-205ENST00000447654 NCAPD3P42695 1498 aa28.51■■■□□ 2.15
HMGA1-205ENST00000447654 SYNJ1O43426 1573 aa28.5■■■□□ 2.15
HMGA1-205ENST00000447654 HMGXB3Q12766 1538 aa28.45■■■□□ 2.15
HMGA1-205ENST00000447654 YTHDC1Q96MU7 727 aaKnown RBP28.37■■■□□ 2.13
HMGA1-205ENST00000447654 CSRNP3Q8WYN3 585 aa28.35■■■□□ 2.13
HMGA1-205ENST00000447654 EEA1Q15075 1411 aa28.3■■■□□ 2.12
HMGA1-205ENST00000447654 TSHZ2Q9NRE2 1034 aa28.28■■■□□ 2.12
HMGA1-205ENST00000447654 MIER1Q8N108 512 aa28.25■■■□□ 2.11
HMGA1-205ENST00000447654 SUPT16HQ9Y5B9 1047 aaKnown RBP28.24■■■□□ 2.11
HMGA1-205ENST00000447654 PRKCSHP14314 528 aaPredicted RBP28.23■■■□□ 2.11
HMGA1-205ENST00000447654 CEP162Q5TB80 1403 aa28.19■■■□□ 2.1
HMGA1-205ENST00000447654 TNIKQ9UKE5 1360 aa28.18■■■□□ 2.1
HMGA1-205ENST00000447654 TOP2BQ02880 1626 aa28.17■■■□□ 2.1
HMGA1-205ENST00000447654 ERICH6Q7L0X2 663 aa28.14■■■□□ 2.09
HMGA1-205ENST00000447654 CFTRP13569 1480 aa28.13■■■□□ 2.09
HMGA1-205ENST00000447654 UBTFP17480 764 aaKnown RBP28.13■■■□□ 2.09
HMGA1-205ENST00000447654 CC2D2AQ9P2K1 1620 aa28.11■■■□□ 2.09
HMGA1-205ENST00000447654 GOLGA3Q08378 1498 aa28.1■■■□□ 2.09
HMGA1-205ENST00000447654 BIVM-ERCC5R4GMW8 1640 aa28.08■■■□□ 2.09
HMGA1-205ENST00000447654 CUX1P39880 1505 aa28.04■■■□□ 2.08
HMGA1-205ENST00000447654 CEP164Q9UPV0 1460 aa28.01■■■□□ 2.07
HMGA1-205ENST00000447654 KIF21BO75037 1637 aa28.01■■■□□ 2.07
HMGA1-205ENST00000447654 RAPGEF2Q9Y4G8 1499 aa27.96■■■□□ 2.07
HMGA1-205ENST00000447654 CADPSQ9ULU8 1353 aa27.9■■■□□ 2.06
HMGA1-205ENST00000447654 PRDM2Q13029 1718 aa27.86■■■□□ 2.05
HMGA1-205ENST00000447654 CLIP1P30622 1438 aa27.77■■■□□ 2.04
HMGA1-205ENST00000447654 PRXQ9BXM0 1461 aa27.76■■■□□ 2.03
HMGA1-205ENST00000447654 RANGAP1P46060 587 aaPredicted RBP27.73■■■□□ 2.03
HMGA1-205ENST00000447654 MYT1LQ9UL68 1186 aa27.7■■■□□ 2.03
HMGA1-205ENST00000447654 KIF27Q86VH2 1401 aa27.69■■■□□ 2.02
HMGA1-205ENST00000447654 APLP2Q06481 763 aa27.67■■■□□ 2.02
HMGA1-205ENST00000447654 NESP48681 1621 aa27.65■■■□□ 2.02
HMGA1-205ENST00000447654 ERICH3Q5RHP9 1530 aa27.65■■■□□ 2.02
HMGA1-205ENST00000447654 FANCD2Q9BXW9 1451 aa27.62■■■□□ 2.01
HMGA1-205ENST00000447654 FGD5Q6ZNL6 1462 aa27.6■■■□□ 2.01
HMGA1-205ENST00000447654 VPS8Q8N3P4 1428 aa27.58■■■□□ 2.01
HMGA1-205ENST00000447654 CUX2O14529 1486 aa27.57■■■□□ 2
HMGA1-205ENST00000447654 RBM19Q9Y4C8 960 aaKnown RBP27.56■■■□□ 2
HMGA1-205ENST00000447654 IGF1RP08069 1367 aa27.52■■■□□ 2
HMGA1-205ENST00000447654 ARAP1Q96P48 1450 aa27.45■■□□□ 1.99
HMGA1-205ENST00000447654 RAD54L2Q9Y4B4 1467 aa27.41■■□□□ 1.98
HMGA1-205ENST00000447654 TOPBP1Q92547 1522 aa27.4■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms