RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 NISCHQ9Y2I1 1504 aa22.41■■□□□ 1.18
TRAPPC9-202ENST00000438773 DCAF8L2P0C7V8 631 aa20.93■□□□□ 0.94
TRAPPC9-202ENST00000438773 SHROOM4Q9ULL8 1493 aa20.13■□□□□ 0.81
TRAPPC9-202ENST00000438773 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
TRAPPC9-202ENST00000438773 ABCC9O60706 1549 aa18.88■□□□□ 0.61
TRAPPC9-202ENST00000438773 CCDC180Q9P1Z9 1646 aa18.8■□□□□ 0.6
TRAPPC9-202ENST00000438773 EHMT2Q96KQ7 1210 aa18.8■□□□□ 0.6
TRAPPC9-202ENST00000438773 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
TRAPPC9-202ENST00000438773 FAM9AQ8IZU1 332 aaPredicted RBP18.66■□□□□ 0.58
TRAPPC9-202ENST00000438773 TRIM41Q8WV44 630 aa18.56■□□□□ 0.56
TRAPPC9-202ENST00000438773 CHIC1Q5VXU3 224 aa18.4■□□□□ 0.54
TRAPPC9-202ENST00000438773 HRCP23327 699 aa18.4■□□□□ 0.54
TRAPPC9-202ENST00000438773 PABPN1Q86U42 306 aaKnown RBP eCLIP18.39■□□□□ 0.53
TRAPPC9-202ENST00000438773 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
TRAPPC9-202ENST00000438773 PCGF6Q9BYE7 350 aa18.34■□□□□ 0.53
TRAPPC9-202ENST00000438773 PPARGC1BQ86YN6 1023 aaKnown RBP18.25■□□□□ 0.51
TRAPPC9-202ENST00000438773 SCRIBQ14160 1630 aa18.22■□□□□ 0.51
TRAPPC9-202ENST00000438773 LOC105371045A0A1W2PR82 267 aa18.11■□□□□ 0.49
TRAPPC9-202ENST00000438773 APLP2Q06481 763 aa18.09■□□□□ 0.49
TRAPPC9-202ENST00000438773 TTBK1Q5TCY1 1321 aaPredicted RBP18.08■□□□□ 0.48
TRAPPC9-202ENST00000438773 RANGAP1P46060 587 aaPredicted RBP18.07■□□□□ 0.48
TRAPPC9-202ENST00000438773 UBTFP17480 764 aaKnown RBP18.07■□□□□ 0.48
TRAPPC9-202ENST00000438773 DCAF1Q9Y4B6 1507 aa17.99■□□□□ 0.47
TRAPPC9-202ENST00000438773 NACADO15069 1562 aa17.92■□□□□ 0.46
TRAPPC9-202ENST00000438773 RB1CC1Q8TDY2 1594 aa17.91■□□□□ 0.46
TRAPPC9-202ENST00000438773 RSF1Q96T23 1441 aaPredicted RBP17.77■□□□□ 0.43
TRAPPC9-202ENST00000438773 ATP1B4Q9UN42 357 aaPredicted RBP17.71■□□□□ 0.43
TRAPPC9-202ENST00000438773 TRIM26Q12899 539 aaPredicted RBP17.68■□□□□ 0.42
TRAPPC9-202ENST00000438773 CECR2Q9BXF3 1484 aa17.6■□□□□ 0.41
TRAPPC9-202ENST00000438773 CCER1Q8TC90 406 aaPredicted RBP17.59■□□□□ 0.41
TRAPPC9-202ENST00000438773 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
TRAPPC9-202ENST00000438773 CSRNP3Q8WYN3 585 aa17.47■□□□□ 0.39
TRAPPC9-202ENST00000438773 BAZ1AQ9NRL2 1556 aaPredicted RBP17.44■□□□□ 0.38
TRAPPC9-202ENST00000438773 MROH2BQ7Z745 1585 aa17.39■□□□□ 0.37
TRAPPC9-202ENST00000438773 YTHDC1Q96MU7 727 aaKnown RBP17.33■□□□□ 0.36
TRAPPC9-202ENST00000438773 SCAF1Q9H7N4 1312 aaKnown RBP17.31■□□□□ 0.36
TRAPPC9-202ENST00000438773 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
TRAPPC9-202ENST00000438773 BAZ1BQ9UIG0 1483 aaKnown RBP17.29■□□□□ 0.36
TRAPPC9-202ENST00000438773 ITGAEP38570 1179 aa17.29■□□□□ 0.36
TRAPPC9-202ENST00000438773 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.2■□□□□ 0.34
TRAPPC9-202ENST00000438773 WIZO95785 1651 aa17.14■□□□□ 0.34
TRAPPC9-202ENST00000438773 WRNQ14191 1432 aaPredicted RBP eCLIP17.14■□□□□ 0.338e-10■■■■■ 68.9
TRAPPC9-202ENST00000438773 CENPBP07199 599 aaPredicted RBP17.13■□□□□ 0.33
TRAPPC9-202ENST00000438773 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
TRAPPC9-202ENST00000438773 P3H3Q8IVL6 736 aa17.09■□□□□ 0.33
TRAPPC9-202ENST00000438773 PELP1Q8IZL8 1130 aaKnown RBP17.09■□□□□ 0.33
TRAPPC9-202ENST00000438773 FBLN2P98095 1184 aa17.08■□□□□ 0.33
TRAPPC9-202ENST00000438773 EEA1Q15075 1411 aa17.01■□□□□ 0.31
TRAPPC9-202ENST00000438773 FAM50AQ14320 339 aaKnown RBP17■□□□□ 0.31
TRAPPC9-202ENST00000438773 TOP2AP11388 1531 aaKnown RBP17■□□□□ 0.31
TRAPPC9-202ENST00000438773 SMARCA4P51532 1647 aa17■□□□□ 0.31
TRAPPC9-202ENST00000438773 SMARCA2P51531 1590 aa17■□□□□ 0.31
TRAPPC9-202ENST00000438773 NEUROD1Q13562 356 aa16.97■□□□□ 0.31
TRAPPC9-202ENST00000438773 ATAD2BQ9ULI0 1458 aa16.95■□□□□ 0.3
TRAPPC9-202ENST00000438773 ABCC8Q09428 1581 aa16.94■□□□□ 0.3
TRAPPC9-202ENST00000438773 SOGA1O94964 1423 aa16.93■□□□□ 0.3
TRAPPC9-202ENST00000438773 ACIN1Q9UKV3 1341 aaKnown RBP16.92■□□□□ 0.3
TRAPPC9-202ENST00000438773 GOLGA3Q08378 1498 aa16.9■□□□□ 0.3
TRAPPC9-202ENST00000438773 CLIP1P30622 1438 aa16.89■□□□□ 0.3
TRAPPC9-202ENST00000438773 CEP162Q5TB80 1403 aa16.89■□□□□ 0.3
TRAPPC9-202ENST00000438773 ARID3CA6NKF2 412 aa16.86■□□□□ 0.29
TRAPPC9-202ENST00000438773 MYT1LQ9UL68 1186 aa16.85■□□□□ 0.29
TRAPPC9-202ENST00000438773 KIF27Q86VH2 1401 aa16.85■□□□□ 0.29
TRAPPC9-202ENST00000438773 GTF3C3Q9Y5Q9 886 aa16.85■□□□□ 0.29
TRAPPC9-202ENST00000438773 DIEXFQ68CQ4 756 aaKnown RBP16.85■□□□□ 0.29
TRAPPC9-202ENST00000438773 TNIKQ9UKE5 1360 aa16.85■□□□□ 0.29
TRAPPC9-202ENST00000438773 CEP164Q9UPV0 1460 aa16.81■□□□□ 0.28
TRAPPC9-202ENST00000438773 BICRAQ9NZM4 1560 aa16.72■□□□□ 0.27
TRAPPC9-202ENST00000438773 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
TRAPPC9-202ENST00000438773 ERCC6Q03468 1493 aa16.71■□□□□ 0.27
TRAPPC9-202ENST00000438773 TRIM52Q96A61 297 aa16.71■□□□□ 0.27
TRAPPC9-202ENST00000438773 CUX2O14529 1486 aa16.7■□□□□ 0.26
TRAPPC9-202ENST00000438773 CHMP7Q8WUX9 453 aaPredicted RBP16.66■□□□□ 0.26
TRAPPC9-202ENST00000438773 UNC13AQ9UPW8 1703 aa16.65■□□□□ 0.26
TRAPPC9-202ENST00000438773 CARMIL1Q5VZK9 1371 aa16.64■□□□□ 0.25
TRAPPC9-202ENST00000438773 CDK11AQ9UQ88 783 aaPredicted RBP16.64■□□□□ 0.25
TRAPPC9-202ENST00000438773 EIF4G1Q04637 1599 aaKnown RBP16.63■□□□□ 0.25
TRAPPC9-202ENST00000438773 NCAPD3P42695 1498 aa16.63■□□□□ 0.25
TRAPPC9-202ENST00000438773 RUSC2Q8N2Y8 1516 aa16.61■□□□□ 0.25
TRAPPC9-202ENST00000438773 ERICH6Q7L0X2 663 aa16.6■□□□□ 0.25
TRAPPC9-202ENST00000438773 PDS5BQ9NTI5 1447 aa16.58■□□□□ 0.25
TRAPPC9-202ENST00000438773 ZNF777Q9ULD5 760 aaPredicted RBP16.58■□□□□ 0.24
TRAPPC9-202ENST00000438773 MTUS2Q5JR59 1369 aa16.57■□□□□ 0.24
TRAPPC9-202ENST00000438773 NPM1P06748 294 aaKnown RBP eCLIP16.56■□□□□ 0.24
TRAPPC9-202ENST00000438773 POLR3GLQ9BT43 218 aa16.55■□□□□ 0.24
TRAPPC9-202ENST00000438773 ZNF316A6NFI3 1004 aaPredicted RBP16.54■□□□□ 0.24
TRAPPC9-202ENST00000438773 TDRD9Q8NDG6 1382 aaKnown RBP16.53■□□□□ 0.24
TRAPPC9-202ENST00000438773 MIER1Q8N108 512 aa16.48■□□□□ 0.23
TRAPPC9-202ENST00000438773 RAPGEF2Q9Y4G8 1499 aa16.48■□□□□ 0.23
TRAPPC9-202ENST00000438773 FANCD2Q9BXW9 1451 aa16.48■□□□□ 0.23
TRAPPC9-202ENST00000438773 VPS8Q8N3P4 1428 aa16.48■□□□□ 0.23
TRAPPC9-202ENST00000438773 CHIC2Q9UKJ5 165 aa16.47■□□□□ 0.23
TRAPPC9-202ENST00000438773 MYT1Q01538 1121 aa16.46■□□□□ 0.23
TRAPPC9-202ENST00000438773 CNGB1Q14028 1251 aaPredicted RBP16.45■□□□□ 0.22
TRAPPC9-202ENST00000438773 BCANQ96GW7 911 aa16.45■□□□□ 0.22
TRAPPC9-202ENST00000438773 NEFLP07196 543 aa16.44■□□□□ 0.22
TRAPPC9-202ENST00000438773 ZNF326Q5BKZ1 582 aaKnown RBP16.39■□□□□ 0.22
TRAPPC9-202ENST00000438773 FHAD1B1AJZ9 1412 aa16.39■□□□□ 0.21
TRAPPC9-202ENST00000438773 KANK4Q5T7N3 995 aaPredicted RBP16.39■□□□□ 0.21
TRAPPC9-202ENST00000438773 CFTRP13569 1480 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms