RNA–Protein interactions for RNA: ENST00000519482.1

TRAPPC9-206, Transcript of trafficking protein particle complex 9, humanhuman

TSL 4

Gene TRAPPC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-206ENST00000519482 NISCHQ9Y2I1 1504 aa30.99■■■□□ 2.55
TRAPPC9-206ENST00000519482 CCDC180Q9P1Z9 1646 aa27.83■■■□□ 2.05
TRAPPC9-206ENST00000519482 ABCC9O60706 1549 aa27.55■■■□□ 2
TRAPPC9-206ENST00000519482 RB1CC1Q8TDY2 1594 aa26.37■■□□□ 1.81
TRAPPC9-206ENST00000519482 NACADO15069 1562 aa26.23■■□□□ 1.79
TRAPPC9-206ENST00000519482 DCAF8L2P0C7V8 631 aa26■■□□□ 1.75
TRAPPC9-206ENST00000519482 MYO15BQ96JP2 1530 aa25.94■■□□□ 1.74
TRAPPC9-206ENST00000519482 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
TRAPPC9-206ENST00000519482 ZCCHC6Q5VYS8 1495 aaKnown RBP25.72■■□□□ 1.71
TRAPPC9-206ENST00000519482 DNAJC5BQ9UF47 199 aa25.67■■□□□ 1.7
TRAPPC9-206ENST00000519482 DCAF1Q9Y4B6 1507 aa25.66■■□□□ 1.7
TRAPPC9-206ENST00000519482 PABPN1Q86U42 306 aaKnown RBP eCLIP25.63■■□□□ 1.69
TRAPPC9-206ENST00000519482 BICRAQ9NZM4 1560 aa25.57■■□□□ 1.68
TRAPPC9-206ENST00000519482 SHROOM4Q9ULL8 1493 aa25.31■■□□□ 1.64
TRAPPC9-206ENST00000519482 SCRIBQ14160 1630 aa25.27■■□□□ 1.64
TRAPPC9-206ENST00000519482 CC2D2AQ9P2K1 1620 aa24.94■■□□□ 1.58
TRAPPC9-206ENST00000519482 EIF4G1Q04637 1599 aaKnown RBP24.93■■□□□ 1.58
TRAPPC9-206ENST00000519482 CECR2Q9BXF3 1484 aa24.83■■□□□ 1.56
TRAPPC9-206ENST00000519482 NCAPD3P42695 1498 aa24.19■■□□□ 1.46
TRAPPC9-206ENST00000519482 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
TRAPPC9-206ENST00000519482 ATAD2BQ9ULI0 1458 aa24.11■■□□□ 1.45
TRAPPC9-206ENST00000519482 SMARCA2P51531 1590 aa24.1■■□□□ 1.45
TRAPPC9-206ENST00000519482 BAZ1AQ9NRL2 1556 aaPredicted RBP24.07■■□□□ 1.44
TRAPPC9-206ENST00000519482 HMGXB3Q12766 1538 aa24.05■■□□□ 1.44
TRAPPC9-206ENST00000519482 PEG3Q9GZU2 1588 aa23.95■■□□□ 1.43
TRAPPC9-206ENST00000519482 BAZ1BQ9UIG0 1483 aaKnown RBP23.9■■□□□ 1.42
TRAPPC9-206ENST00000519482 MROH2BQ7Z745 1585 aa23.86■■□□□ 1.41
TRAPPC9-206ENST00000519482 ERCC6Q03468 1493 aa23.8■■□□□ 1.4
TRAPPC9-206ENST00000519482 CUX2O14529 1486 aa23.75■■□□□ 1.39
TRAPPC9-206ENST00000519482 NESP48681 1621 aa23.71■■□□□ 1.39
TRAPPC9-206ENST00000519482 LAMC3Q9Y6N6 1575 aa23.65■■□□□ 1.38
TRAPPC9-206ENST00000519482 WIZO95785 1651 aa23.6■■□□□ 1.37
TRAPPC9-206ENST00000519482 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
TRAPPC9-206ENST00000519482 THOC2Q8NI27 1593 aaKnown RBP23.5■■□□□ 1.35
TRAPPC9-206ENST00000519482 KIF21AQ7Z4S6 1674 aa23.49■■□□□ 1.35
TRAPPC9-206ENST00000519482 PDS5BQ9NTI5 1447 aa23.47■■□□□ 1.35
TRAPPC9-206ENST00000519482 CADPSQ9ULU8 1353 aa23.44■■□□□ 1.34
TRAPPC9-206ENST00000519482 RSF1Q96T23 1441 aaPredicted RBP23.42■■□□□ 1.34
TRAPPC9-206ENST00000519482 TOP2AP11388 1531 aaKnown RBP23.33■■□□□ 1.32
TRAPPC9-206ENST00000519482 MRC2Q9UBG0 1479 aa23.25■■□□□ 1.31
TRAPPC9-206ENST00000519482 CFTRP13569 1480 aa23.22■■□□□ 1.31
TRAPPC9-206ENST00000519482 WDR62O43379 1518 aa23.21■■□□□ 1.31
TRAPPC9-206ENST00000519482 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
TRAPPC9-206ENST00000519482 FANCD2Q9BXW9 1451 aa23.17■■□□□ 1.3
TRAPPC9-206ENST00000519482 PRDM2Q13029 1718 aa23.11■■□□□ 1.29
TRAPPC9-206ENST00000519482 CCDC88BA6NC98 1476 aa23.03■■□□□ 1.28
TRAPPC9-206ENST00000519482 URB2Q14146 1524 aaKnown RBP22.97■■□□□ 1.27
TRAPPC9-206ENST00000519482 ABCC8Q09428 1581 aa22.77■■□□□ 1.24
TRAPPC9-206ENST00000519482 TOPBP1Q92547 1522 aa22.76■■□□□ 1.23
TRAPPC9-206ENST00000519482 IFT140Q96RY7 1462 aa22.73■■□□□ 1.23
TRAPPC9-206ENST00000519482 DNMBPQ6XZF7 1577 aa22.72■■□□□ 1.23
TRAPPC9-206ENST00000519482 OSCARQ8IYS5 282 aa22.65■■□□□ 1.22
TRAPPC9-206ENST00000519482 ZNF608Q9ULD9 1512 aaPredicted RBP22.64■■□□□ 1.21
TRAPPC9-206ENST00000519482 EIF4G3O43432 1585 aaKnown RBP22.58■■□□□ 1.2
TRAPPC9-206ENST00000519482 TARBP1Q13395 1621 aaKnown RBP22.57■■□□□ 1.2
TRAPPC9-206ENST00000519482 POLA1P09884 1462 aaPredicted RBP22.54■■□□□ 1.2
TRAPPC9-206ENST00000519482 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
TRAPPC9-206ENST00000519482 AQRO60306 1485 aaKnown RBP eCLIP22.45■■□□□ 1.183e-6■■■■■ 26.9
TRAPPC9-206ENST00000519482 SUPT5HO00267 1087 aaKnown RBP22.43■■□□□ 1.18
TRAPPC9-206ENST00000519482 SOGA1O94964 1423 aa22.42■■□□□ 1.18
TRAPPC9-206ENST00000519482 RAD54L2Q9Y4B4 1467 aa22.41■■□□□ 1.18
TRAPPC9-206ENST00000519482 WDR97A6NE52 1622 aa22.41■■□□□ 1.18
TRAPPC9-206ENST00000519482 CUX1P39880 1505 aa22.41■■□□□ 1.18
TRAPPC9-206ENST00000519482 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
TRAPPC9-206ENST00000519482 CHD1O14646 1710 aa22.4■■□□□ 1.18
TRAPPC9-206ENST00000519482 RIMBP3CA6NJZ7 1639 aa22.37■■□□□ 1.17
TRAPPC9-206ENST00000519482 RIMBP3BA6NNM3 1639 aa22.37■■□□□ 1.17
TRAPPC9-206ENST00000519482 RIMBP3Q9UFD9 1639 aa22.37■■□□□ 1.17
TRAPPC9-206ENST00000519482 TDRD9Q8NDG6 1382 aaKnown RBP22.33■■□□□ 1.17
TRAPPC9-206ENST00000519482 ARHGEF11O15085 1522 aa22.3■■□□□ 1.16
TRAPPC9-206ENST00000519482 FBLN2P98095 1184 aa22.25■■□□□ 1.15
TRAPPC9-206ENST00000519482 SNAPC4Q5SXM2 1469 aa22.24■■□□□ 1.15
TRAPPC9-206ENST00000519482 GRIN2BQ13224 1484 aa22.23■■□□□ 1.15
TRAPPC9-206ENST00000519482 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
TRAPPC9-206ENST00000519482 PBRM1Q86U86 1689 aa22.2■■□□□ 1.15
TRAPPC9-206ENST00000519482 ABCA10Q8WWZ4 1543 aa22.18■■□□□ 1.14
TRAPPC9-206ENST00000519482 GAPVD1Q14C86 1478 aa22.16■■□□□ 1.14
TRAPPC9-206ENST00000519482 BIVM-ERCC5R4GMW8 1640 aa22.16■■□□□ 1.14
TRAPPC9-206ENST00000519482 CHMP7Q8WUX9 453 aaPredicted RBP22.15■■□□□ 1.14
TRAPPC9-206ENST00000519482 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
TRAPPC9-206ENST00000519482 SYNJ2O15056 1496 aa22.15■■□□□ 1.14
TRAPPC9-206ENST00000519482 SYNJ1O43426 1573 aa22.14■■□□□ 1.13
TRAPPC9-206ENST00000519482 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
TRAPPC9-206ENST00000519482 CLASP1Q7Z460 1538 aa22.12■■□□□ 1.13
TRAPPC9-206ENST00000519482 WRNQ14191 1432 aaPredicted RBP eCLIP22.11■■□□□ 1.13
TRAPPC9-206ENST00000519482 CYB5RLQ6IPT4 315 aa22.07■■□□□ 1.12
TRAPPC9-206ENST00000519482 ARAP1Q96P48 1450 aa22.07■■□□□ 1.12
TRAPPC9-206ENST00000519482 ADAMTS12P58397 1594 aa21.96■■□□□ 1.11
TRAPPC9-206ENST00000519482 GRIN2AQ12879 1464 aa21.94■■□□□ 1.1
TRAPPC9-206ENST00000519482 ERICH3Q5RHP9 1530 aa21.93■■□□□ 1.1
TRAPPC9-206ENST00000519482 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.1
TRAPPC9-206ENST00000519482 NUP160Q12769 1436 aa21.86■■□□□ 1.09
TRAPPC9-206ENST00000519482 CEP170Q5SW79 1584 aa21.86■■□□□ 1.09
TRAPPC9-206ENST00000519482 SHROOM2Q13796 1616 aa21.79■■□□□ 1.08
TRAPPC9-206ENST00000519482 TRHP20396 242 aaPredicted RBP21.78■■□□□ 1.08
TRAPPC9-206ENST00000519482 ERCC6L2Q5T890 1561 aa21.74■■□□□ 1.07
TRAPPC9-206ENST00000519482 KIF27Q86VH2 1401 aa21.68■■□□□ 1.06
TRAPPC9-206ENST00000519482 CUL7Q14999 1698 aa21.66■■□□□ 1.06
TRAPPC9-206ENST00000519482 RUSC2Q8N2Y8 1516 aa21.65■■□□□ 1.06
TRAPPC9-206ENST00000519482 IGF1RP08069 1367 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms