Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDL3P58872 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDL3P58872 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.87■□□□□ 0.29
RHBDL3P58872 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDL3P58872 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDL3P58872 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDL3P58872 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
RHBDL3P58872 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RHBDL3P58872 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
RHBDL3P58872 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RHBDL3P58872 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RHBDL3P58872 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDL3P58872 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDL3P58872 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDL3P58872 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.87■□□□□ 0.29
RHBDL3P58872 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
RHBDL3P58872 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.86■□□□□ 0.29
RHBDL3P58872 AC025183.3-201ENST00000623526 1482 ntBASIC16.86■□□□□ 0.29
RHBDL3P58872 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RHBDL3P58872 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.86■□□□□ 0.29
RHBDL3P58872 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.86■□□□□ 0.29
RHBDL3P58872 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 BAK1P1-201ENST00000317045 636 ntBASIC16.86■□□□□ 0.29
RHBDL3P58872 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC16.86■□□□□ 0.29
RHBDL3P58872 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC16.86■□□□□ 0.29
RHBDL3P58872 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC16.86■□□□□ 0.29
RHBDL3P58872 KRT8P2-201ENST00000556193 944 ntBASIC16.86■□□□□ 0.29
RHBDL3P58872 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC16.86■□□□□ 0.29
RHBDL3P58872 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC16.86■□□□□ 0.29
RHBDL3P58872 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 MIR4265-201ENST00000582152 99 ntBASIC16.86■□□□□ 0.29
RHBDL3P58872 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 HPX-213ENST00000615166 826 ntTSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.86■□□□□ 0.29
RHBDL3P58872 AC002044.2-201ENST00000624910 970 ntBASIC16.86■□□□□ 0.29
RHBDL3P58872 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
RHBDL3P58872 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.86■□□□□ 0.29
RHBDL3P58872 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 MSANTD2P1-201ENST00000445341 1368 ntBASIC16.86■□□□□ 0.29
RHBDL3P58872 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RHBDL3P58872 ODCP-201ENST00000459650 1639 ntBASIC16.85■□□□□ 0.29
RHBDL3P58872 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
RHBDL3P58872 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
RHBDL3P58872 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.85■□□□□ 0.29
RHBDL3P58872 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.85■□□□□ 0.29
RHBDL3P58872 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.85■□□□□ 0.29
RHBDL3P58872 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC16.85■□□□□ 0.29
RHBDL3P58872 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.85■□□□□ 0.29
RHBDL3P58872 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.85■□□□□ 0.29
RHBDL3P58872 LINC00552-201ENST00000625151 2579 ntBASIC16.85■□□□□ 0.29
RHBDL3P58872 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 PDXDC2P-206ENST00000534700 1315 ntBASIC16.85■□□□□ 0.29
RHBDL3P58872 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
RHBDL3P58872 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.85■□□□□ 0.29
RHBDL3P58872 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
RHBDL3P58872 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.85■□□□□ 0.29
RHBDL3P58872 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.85■□□□□ 0.29
RHBDL3P58872 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RHBDL3P58872 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms