RNA–Protein interactions for RNA: ENST00000425876.6

CDK3-201, Transcript of cyclin dependent kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK3, Length 1,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3-201ENST00000425876 NISCHQ9Y2I1 1504 aa32.49■■■□□ 2.79
CDK3-201ENST00000425876 CCDC180Q9P1Z9 1646 aa28.3■■■□□ 2.12
CDK3-201ENST00000425876 ABCC9O60706 1549 aa27.35■■□□□ 1.97
CDK3-201ENST00000425876 ZCCHC6Q5VYS8 1495 aaKnown RBP27.33■■□□□ 1.96
CDK3-201ENST00000425876 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
CDK3-201ENST00000425876 DCAF8L2P0C7V8 631 aa26.68■■□□□ 1.86
CDK3-201ENST00000425876 MYO15BQ96JP2 1530 aa26.61■■□□□ 1.85
CDK3-201ENST00000425876 SHROOM4Q9ULL8 1493 aa26.44■■□□□ 1.82
CDK3-201ENST00000425876 NACADO15069 1562 aa26.36■■□□□ 1.81
CDK3-201ENST00000425876 RB1CC1Q8TDY2 1594 aa26.31■■□□□ 1.8
CDK3-201ENST00000425876 SCRIBQ14160 1630 aa25.95■■□□□ 1.74
CDK3-201ENST00000425876 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
CDK3-201ENST00000425876 BICRAQ9NZM4 1560 aa25.57■■□□□ 1.68
CDK3-201ENST00000425876 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
CDK3-201ENST00000425876 SUPT5HO00267 1087 aaKnown RBP25.52■■□□□ 1.68
CDK3-201ENST00000425876 RSF1Q96T23 1441 aaPredicted RBP25.24■■□□□ 1.63
CDK3-201ENST00000425876 CECR2Q9BXF3 1484 aa25.19■■□□□ 1.62
CDK3-201ENST00000425876 DNAJC5BQ9UF47 199 aa25.14■■□□□ 1.62
CDK3-201ENST00000425876 BAZ1AQ9NRL2 1556 aaPredicted RBP25.09■■□□□ 1.61
CDK3-201ENST00000425876 MROH2BQ7Z745 1585 aa25.07■■□□□ 1.6
CDK3-201ENST00000425876 SMARCA4P51532 1647 aa24.94■■□□□ 1.58
CDK3-201ENST00000425876 EIF4G1Q04637 1599 aaKnown RBP24.86■■□□□ 1.57
CDK3-201ENST00000425876 WIZO95785 1651 aa24.84■■□□□ 1.57
CDK3-201ENST00000425876 CC2D2AQ9P2K1 1620 aa24.76■■□□□ 1.55
CDK3-201ENST00000425876 PEG3Q9GZU2 1588 aa24.69■■□□□ 1.54
CDK3-201ENST00000425876 TOP2AP11388 1531 aaKnown RBP24.65■■□□□ 1.54
CDK3-201ENST00000425876 CHIC1Q5VXU3 224 aa24.55■■□□□ 1.52
CDK3-201ENST00000425876 SMARCA2P51531 1590 aa24.53■■□□□ 1.52
CDK3-201ENST00000425876 ATAD2BQ9ULI0 1458 aa24.53■■□□□ 1.52
CDK3-201ENST00000425876 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
CDK3-201ENST00000425876 BAZ1BQ9UIG0 1483 aaKnown RBP24.37■■□□□ 1.49
CDK3-201ENST00000425876 NCAPD3P42695 1498 aa24.34■■□□□ 1.49
CDK3-201ENST00000425876 HMGXB3Q12766 1538 aa24.3■■□□□ 1.48
CDK3-201ENST00000425876 TRIM41Q8WV44 630 aa24.04■■□□□ 1.44
CDK3-201ENST00000425876 ABCC8Q09428 1581 aa23.83■■□□□ 1.41
CDK3-201ENST00000425876 CFTRP13569 1480 aa23.81■■□□□ 1.4
CDK3-201ENST00000425876 WRNQ14191 1432 aaPredicted RBP eCLIP23.75■■□□□ 1.39
CDK3-201ENST00000425876 NESP48681 1621 aa23.71■■□□□ 1.39
CDK3-201ENST00000425876 CADPSQ9ULU8 1353 aa23.7■■□□□ 1.38
CDK3-201ENST00000425876 PRDM2Q13029 1718 aa23.64■■□□□ 1.38
CDK3-201ENST00000425876 LAMC3Q9Y6N6 1575 aa23.62■■□□□ 1.37
CDK3-201ENST00000425876 SYNJ1O43426 1573 aa23.6■■□□□ 1.37
CDK3-201ENST00000425876 TOP2BQ02880 1626 aa23.55■■□□□ 1.36
CDK3-201ENST00000425876 LOC105371045A0A1W2PR82 267 aa23.54■■□□□ 1.36
CDK3-201ENST00000425876 ERCC6Q03468 1493 aa23.53■■□□□ 1.36
CDK3-201ENST00000425876 EEA1Q15075 1411 aa23.53■■□□□ 1.36
CDK3-201ENST00000425876 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.36
CDK3-201ENST00000425876 BIVM-ERCC5R4GMW8 1640 aa23.51■■□□□ 1.35
CDK3-201ENST00000425876 KIF21AQ7Z4S6 1674 aa23.47■■□□□ 1.35
CDK3-201ENST00000425876 SOGA1O94964 1423 aa23.45■■□□□ 1.34
CDK3-201ENST00000425876 CUX1P39880 1505 aa23.44■■□□□ 1.34
CDK3-201ENST00000425876 PDS5BQ9NTI5 1447 aa23.41■■□□□ 1.34
CDK3-201ENST00000425876 FANCD2Q9BXW9 1451 aa23.41■■□□□ 1.34
CDK3-201ENST00000425876 THOC2Q8NI27 1593 aaKnown RBP23.36■■□□□ 1.33
CDK3-201ENST00000425876 CSRNP3Q8WYN3 585 aa23.33■■□□□ 1.33
CDK3-201ENST00000425876 RUSC2Q8N2Y8 1516 aa23.33■■□□□ 1.33
CDK3-201ENST00000425876 CEP164Q9UPV0 1460 aa23.27■■□□□ 1.32
CDK3-201ENST00000425876 CUX2O14529 1486 aa23.26■■□□□ 1.31
CDK3-201ENST00000425876 DNMBPQ6XZF7 1577 aa23.22■■□□□ 1.31
CDK3-201ENST00000425876 MRC2Q9UBG0 1479 aa23.21■■□□□ 1.31
CDK3-201ENST00000425876 FGD5Q6ZNL6 1462 aa23.16■■□□□ 1.3
CDK3-201ENST00000425876 WDR62O43379 1518 aa23.16■■□□□ 1.3
CDK3-201ENST00000425876 TOPBP1Q92547 1522 aa23.16■■□□□ 1.3
CDK3-201ENST00000425876 KIF21BO75037 1637 aa23.16■■□□□ 1.3
CDK3-201ENST00000425876 KIF27Q86VH2 1401 aa23.16■■□□□ 1.3
CDK3-201ENST00000425876 GOLGA3Q08378 1498 aa23.15■■□□□ 1.3
CDK3-201ENST00000425876 TNIKQ9UKE5 1360 aa23.12■■□□□ 1.29
CDK3-201ENST00000425876 EHMT2Q96KQ7 1210 aa23.1■■□□□ 1.29
CDK3-201ENST00000425876 URB2Q14146 1524 aaKnown RBP23.1■■□□□ 1.29
CDK3-201ENST00000425876 POLA1P09884 1462 aaPredicted RBP23.06■■□□□ 1.28
CDK3-201ENST00000425876 PRXQ9BXM0 1461 aa23.04■■□□□ 1.28
CDK3-201ENST00000425876 ERICH3Q5RHP9 1530 aa23.01■■□□□ 1.27
CDK3-201ENST00000425876 ABCA10Q8WWZ4 1543 aa23.01■■□□□ 1.27
CDK3-201ENST00000425876 UBTFP17480 764 aaKnown RBP22.99■■□□□ 1.27
CDK3-201ENST00000425876 RAPGEF2Q9Y4G8 1499 aa22.97■■□□□ 1.27
CDK3-201ENST00000425876 CEP162Q5TB80 1403 aa22.95■■□□□ 1.27
CDK3-201ENST00000425876 RAD54L2Q9Y4B4 1467 aa22.95■■□□□ 1.26
CDK3-201ENST00000425876 IGF1RP08069 1367 aa22.94■■□□□ 1.26
CDK3-201ENST00000425876 DNAJC5Q9H3Z4 198 aa22.93■■□□□ 1.26
CDK3-201ENST00000425876 WDR97A6NE52 1622 aa22.88■■□□□ 1.25
CDK3-201ENST00000425876 CARMIL1Q5VZK9 1371 aa22.82■■□□□ 1.24
CDK3-201ENST00000425876 TARBP1Q13395 1621 aaKnown RBP22.81■■□□□ 1.24
CDK3-201ENST00000425876 ABCA5Q8WWZ7 1642 aa22.78■■□□□ 1.24
CDK3-201ENST00000425876 CLIP1P30622 1438 aa22.77■■□□□ 1.23
CDK3-201ENST00000425876 CUL7Q14999 1698 aa22.75■■□□□ 1.23
CDK3-201ENST00000425876 IFT140Q96RY7 1462 aa22.75■■□□□ 1.23
CDK3-201ENST00000425876 GAPVD1Q14C86 1478 aa22.74■■□□□ 1.23
CDK3-201ENST00000425876 TDRD9Q8NDG6 1382 aaKnown RBP22.72■■□□□ 1.23
CDK3-201ENST00000425876 ZNF608Q9ULD9 1512 aaPredicted RBP22.7■■□□□ 1.22
CDK3-201ENST00000425876 EIF4G3O43432 1585 aaKnown RBP22.64■■□□□ 1.21
CDK3-201ENST00000425876 TRIM26Q12899 539 aaPredicted RBP22.63■■□□□ 1.21
CDK3-201ENST00000425876 VPS8Q8N3P4 1428 aa22.6■■□□□ 1.21
CDK3-201ENST00000425876 GRIN2BQ13224 1484 aa22.57■■□□□ 1.2
CDK3-201ENST00000425876 PCGF6Q9BYE7 350 aa22.56■■□□□ 1.2
CDK3-201ENST00000425876 AQRO60306 1485 aaKnown RBP eCLIP22.56■■□□□ 1.25e-8■■■□□ 17.4
CDK3-201ENST00000425876 PBRM1Q86U86 1689 aa22.56■■□□□ 1.2
CDK3-201ENST00000425876 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
CDK3-201ENST00000425876 FHAD1B1AJZ9 1412 aa22.52■■□□□ 1.2
CDK3-201ENST00000425876 ARHGAP35Q9NRY4 1499 aa22.5■■□□□ 1.19
CDK3-201ENST00000425876 RANGAP1P46060 587 aaPredicted RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 306.8 ms