RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 NISCHQ9Y2I1 1504 aa28.5■■■□□ 2.15
PCDHA1-203ENST00000504120 DCAF8L2P0C7V8 631 aa28.5■■■□□ 2.15
PCDHA1-203ENST00000504120 SUPT5HO00267 1087 aaKnown RBP27.19■■□□□ 1.94
PCDHA1-203ENST00000504120 SHROOM4Q9ULL8 1493 aa26.65■■□□□ 1.86
PCDHA1-203ENST00000504120 EHMT2Q96KQ7 1210 aa26.17■■□□□ 1.78
PCDHA1-203ENST00000504120 PELP1Q8IZL8 1130 aaKnown RBP25.98■■□□□ 1.75
PCDHA1-203ENST00000504120 APLP2Q06481 763 aa25.96■■□□□ 1.75
PCDHA1-203ENST00000504120 FAM9AQ8IZU1 332 aaPredicted RBP25.62■■□□□ 1.69
PCDHA1-203ENST00000504120 PCGF6Q9BYE7 350 aa25.45■■□□□ 1.67
PCDHA1-203ENST00000504120 TTBK1Q5TCY1 1321 aaPredicted RBP25.33■■□□□ 1.65
PCDHA1-203ENST00000504120 TRIM41Q8WV44 630 aa25.27■■□□□ 1.64
PCDHA1-203ENST00000504120 ZEB1P37275 1124 aaPredicted RBP25.25■■□□□ 1.63
PCDHA1-203ENST00000504120 CENPBP07199 599 aaPredicted RBP25.11■■□□□ 1.61
PCDHA1-203ENST00000504120 RANGAP1P46060 587 aaPredicted RBP25.07■■□□□ 1.6
PCDHA1-203ENST00000504120 CCER1Q8TC90 406 aaPredicted RBP25.07■■□□□ 1.6
PCDHA1-203ENST00000504120 UBTFP17480 764 aaKnown RBP24.94■■□□□ 1.58
PCDHA1-203ENST00000504120 ATP1B4Q9UN42 357 aaPredicted RBP24.91■■□□□ 1.58
PCDHA1-203ENST00000504120 ERICH6Q7L0X2 663 aa24.78■■□□□ 1.56
PCDHA1-203ENST00000504120 NEFLP07196 543 aa24.56■■□□□ 1.52
PCDHA1-203ENST00000504120 TRIM26Q12899 539 aaPredicted RBP24.49■■□□□ 1.51
PCDHA1-203ENST00000504120 YTHDC1Q96MU7 727 aaKnown RBP24.42■■□□□ 1.5
PCDHA1-203ENST00000504120 PPARGC1BQ86YN6 1023 aaKnown RBP24.4■■□□□ 1.5
PCDHA1-203ENST00000504120 HRCP23327 699 aa24.19■■□□□ 1.46
PCDHA1-203ENST00000504120 CHIC1Q5VXU3 224 aa24.17■■□□□ 1.46
PCDHA1-203ENST00000504120 MYT1Q01538 1121 aa24.16■■□□□ 1.46
PCDHA1-203ENST00000504120 ABCC9O60706 1549 aa24.11■■□□□ 1.45
PCDHA1-203ENST00000504120 LOC105371045A0A1W2PR82 267 aa24.1■■□□□ 1.45
PCDHA1-203ENST00000504120 ITGAEP38570 1179 aa24.09■■□□□ 1.45
PCDHA1-203ENST00000504120 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.04■■□□□ 1.44
PCDHA1-203ENST00000504120 HNRNPUL2Q1KMD3 747 aaKnown RBP24.04■■□□□ 1.44
PCDHA1-203ENST00000504120 MYT1LQ9UL68 1186 aa23.93■■□□□ 1.42
PCDHA1-203ENST00000504120 POLR3GLQ9BT43 218 aa23.89■■□□□ 1.42
PCDHA1-203ENST00000504120 DAXXQ9UER7 740 aaPredicted RBP23.81■■□□□ 1.4
PCDHA1-203ENST00000504120 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
PCDHA1-203ENST00000504120 ZCCHC6Q5VYS8 1495 aaKnown RBP23.69■■□□□ 1.38
PCDHA1-203ENST00000504120 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.38
PCDHA1-203ENST00000504120 DIEXFQ68CQ4 756 aaKnown RBP23.6■■□□□ 1.37
PCDHA1-203ENST00000504120 CNGB1Q14028 1251 aaPredicted RBP23.58■■□□□ 1.36
PCDHA1-203ENST00000504120 FAM50AQ14320 339 aaKnown RBP23.54■■□□□ 1.36
PCDHA1-203ENST00000504120 SLC4A1APQ9BWU0 796 aaKnown RBP23.43■■□□□ 1.34
PCDHA1-203ENST00000504120 TRIM52Q96A61 297 aa23.42■■□□□ 1.34
PCDHA1-203ENST00000504120 NEUROD1Q13562 356 aa23.32■■□□□ 1.32
PCDHA1-203ENST00000504120 SCRIBQ14160 1630 aa23.29■■□□□ 1.32
PCDHA1-203ENST00000504120 CLSPNQ9HAW4 1339 aa23.29■■□□□ 1.32
PCDHA1-203ENST00000504120 RTL5Q5HYW3 569 aaPredicted RBP23.25■■□□□ 1.31
PCDHA1-203ENST00000504120 ZNF316A6NFI3 1004 aaPredicted RBP23.25■■□□□ 1.31
PCDHA1-203ENST00000504120 ANP32CO43423 234 aa23.2■■□□□ 1.3
PCDHA1-203ENST00000504120 ZNF326Q5BKZ1 582 aaKnown RBP23.09■■□□□ 1.29
PCDHA1-203ENST00000504120 CSRNP3Q8WYN3 585 aa23.08■■□□□ 1.28
PCDHA1-203ENST00000504120 GTF3C3Q9Y5Q9 886 aa23.05■■□□□ 1.28
PCDHA1-203ENST00000504120 FBLN2P98095 1184 aa23.02■■□□□ 1.27
PCDHA1-203ENST00000504120 BCANQ96GW7 911 aa23■■□□□ 1.27
PCDHA1-203ENST00000504120 RB1CC1Q8TDY2 1594 aa22.99■■□□□ 1.27
PCDHA1-203ENST00000504120 CDK11AQ9UQ88 783 aaPredicted RBP22.98■■□□□ 1.27
PCDHA1-203ENST00000504120 NACADO15069 1562 aa22.91■■□□□ 1.26
PCDHA1-203ENST00000504120 P3H3Q8IVL6 736 aa22.9■■□□□ 1.26
PCDHA1-203ENST00000504120 ZBTB47Q9UFB7 747 aaPredicted RBP22.89■■□□□ 1.25
PCDHA1-203ENST00000504120 DCAF1Q9Y4B6 1507 aa22.81■■□□□ 1.24
PCDHA1-203ENST00000504120 CANXP27824 592 aaKnown RBP22.79■■□□□ 1.24
PCDHA1-203ENST00000504120 ACIN1Q9UKV3 1341 aaKnown RBP22.77■■□□□ 1.24
PCDHA1-203ENST00000504120 ARID3CA6NKF2 412 aa22.77■■□□□ 1.24
PCDHA1-203ENST00000504120 NEFMP07197 916 aa22.76■■□□□ 1.23
PCDHA1-203ENST00000504120 ZNF777Q9ULD5 760 aaPredicted RBP22.73■■□□□ 1.23
PCDHA1-203ENST00000504120 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
PCDHA1-203ENST00000504120 TONSLQ96HA7 1378 aa22.64■■□□□ 1.21
PCDHA1-203ENST00000504120 ANP32AP39687 249 aaKnown RBP22.59■■□□□ 1.21
PCDHA1-203ENST00000504120 SLC24A1O60721 1099 aa22.59■■□□□ 1.21
PCDHA1-203ENST00000504120 BCL11AQ9H165 835 aa22.49■■□□□ 1.19
PCDHA1-203ENST00000504120 FKBP8Q14318 412 aa22.44■■□□□ 1.18
PCDHA1-203ENST00000504120 HNRNPUQ00839 825 aaKnown RBP eCLIP22.43■■□□□ 1.18
PCDHA1-203ENST00000504120 ESF1Q9H501 851 aaKnown RBP22.43■■□□□ 1.18
PCDHA1-203ENST00000504120 DDX10Q13206 875 aaKnown RBP22.42■■□□□ 1.18
PCDHA1-203ENST00000504120 EEA1Q15075 1411 aa22.4■■□□□ 1.18
PCDHA1-203ENST00000504120 BAZ1AQ9NRL2 1556 aaPredicted RBP22.4■■□□□ 1.18
PCDHA1-203ENST00000504120 NPM2Q86SE8 214 aaKnown RBP22.38■■□□□ 1.17
PCDHA1-203ENST00000504120 CHGAP10645 457 aaKnown RBP22.38■■□□□ 1.17
PCDHA1-203ENST00000504120 BAZ1BQ9UIG0 1483 aaKnown RBP22.37■■□□□ 1.17
PCDHA1-203ENST00000504120 FAM9BQ8IZU0 186 aa22.36■■□□□ 1.17
PCDHA1-203ENST00000504120 STAG3Q9UJ98 1225 aa22.35■■□□□ 1.17
PCDHA1-203ENST00000504120 NPM1P06748 294 aaKnown RBP eCLIP22.34■■□□□ 1.17
PCDHA1-203ENST00000504120 CHIC2Q9UKJ5 165 aa22.33■■□□□ 1.17
PCDHA1-203ENST00000504120 MTUS2Q5JR59 1369 aa22.28■■□□□ 1.16
PCDHA1-203ENST00000504120 TMC1Q8TDI8 760 aa22.28■■□□□ 1.16
PCDHA1-203ENST00000504120 UPF2Q9HAU5 1272 aaKnown RBP22.28■■□□□ 1.16
PCDHA1-203ENST00000504120 TSPY4P0CV99 314 aa22.27■■□□□ 1.16
PCDHA1-203ENST00000504120 TSPY10P0CW01 314 aa22.27■■□□□ 1.16
PCDHA1-203ENST00000504120 CLIP1P30622 1438 aa22.26■■□□□ 1.15
PCDHA1-203ENST00000504120 WRNQ14191 1432 aaPredicted RBP eCLIP22.25■■□□□ 1.15
PCDHA1-203ENST00000504120 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.23■■□□□ 1.15
PCDHA1-203ENST00000504120 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.22■■□□□ 1.15
PCDHA1-203ENST00000504120 MYO15BQ96JP2 1530 aa22.22■■□□□ 1.15
PCDHA1-203ENST00000504120 HSP90AA1P07900 732 aaKnown RBP22.21■■□□□ 1.15
PCDHA1-203ENST00000504120 GOLGA3Q08378 1498 aa22.2■■□□□ 1.14
PCDHA1-203ENST00000504120 CECR2Q9BXF3 1484 aa22.2■■□□□ 1.14
PCDHA1-203ENST00000504120 ANP32BQ92688 251 aaKnown RBP22.2■■□□□ 1.14
PCDHA1-203ENST00000504120 CCDC136Q96JN2 1154 aa22.18■■□□□ 1.14
PCDHA1-203ENST00000504120 MRS2Q9HD23 443 aa22.18■■□□□ 1.14
PCDHA1-203ENST00000504120 SALL2Q9Y467 1007 aaPredicted RBP22.18■■□□□ 1.14
PCDHA1-203ENST00000504120 WDR43Q15061 677 aaKnown RBP eCLIP22.17■■□□□ 1.14
PCDHA1-203ENST00000504120 KDM2AQ9Y2K7 1162 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms