RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 NISCHQ9Y2I1 1504 aa34.07■■■■□ 3.04
USP4-203ENST00000415188 CCDC180Q9P1Z9 1646 aa30.43■■■□□ 2.46
USP4-203ENST00000415188 ABCC9O60706 1549 aa30.34■■■□□ 2.45
USP4-203ENST00000415188 RB1CC1Q8TDY2 1594 aa28.89■■■□□ 2.22
USP4-203ENST00000415188 NACADO15069 1562 aa28.74■■■□□ 2.19
USP4-203ENST00000415188 DCAF8L2P0C7V8 631 aa28.72■■■□□ 2.19
USP4-203ENST00000415188 MYO15BQ96JP2 1530 aa28.39■■■□□ 2.13
USP4-203ENST00000415188 DNAJC5BQ9UF47 199 aa28.32■■■□□ 2.12
USP4-203ENST00000415188 PABPN1Q86U42 306 aaKnown RBP eCLIP28.31■■■□□ 2.12
USP4-203ENST00000415188 ZCCHC6Q5VYS8 1495 aaKnown RBP28.28■■■□□ 2.12
USP4-203ENST00000415188 UNC13AQ9UPW8 1703 aa28.25■■■□□ 2.11
USP4-203ENST00000415188 DCAF1Q9Y4B6 1507 aa28.11■■■□□ 2.09
USP4-203ENST00000415188 BICRAQ9NZM4 1560 aa28.09■■■□□ 2.09
USP4-203ENST00000415188 SCRIBQ14160 1630 aa27.82■■■□□ 2.04
USP4-203ENST00000415188 SHROOM4Q9ULL8 1493 aa27.65■■■□□ 2.02
USP4-203ENST00000415188 CC2D2AQ9P2K1 1620 aa27.39■■□□□ 1.97
USP4-203ENST00000415188 EIF4G1Q04637 1599 aaKnown RBP27.37■■□□□ 1.97
USP4-203ENST00000415188 CECR2Q9BXF3 1484 aa27.29■■□□□ 1.96
USP4-203ENST00000415188 NCAPD3P42695 1498 aa26.55■■□□□ 1.84
USP4-203ENST00000415188 SMARCA4P51532 1647 aa26.53■■□□□ 1.84
USP4-203ENST00000415188 ATAD2BQ9ULI0 1458 aa26.52■■□□□ 1.84
USP4-203ENST00000415188 SMARCA2P51531 1590 aa26.42■■□□□ 1.82
USP4-203ENST00000415188 BAZ1AQ9NRL2 1556 aaPredicted RBP26.41■■□□□ 1.82
USP4-203ENST00000415188 HMGXB3Q12766 1538 aa26.36■■□□□ 1.81
USP4-203ENST00000415188 MROH2BQ7Z745 1585 aa26.28■■□□□ 1.8
USP4-203ENST00000415188 BAZ1BQ9UIG0 1483 aaKnown RBP26.27■■□□□ 1.8
USP4-203ENST00000415188 PEG3Q9GZU2 1588 aa26.24■■□□□ 1.79
USP4-203ENST00000415188 ERCC6Q03468 1493 aa26.15■■□□□ 1.78
USP4-203ENST00000415188 NESP48681 1621 aa26.13■■□□□ 1.77
USP4-203ENST00000415188 CUX2O14529 1486 aa26.01■■□□□ 1.75
USP4-203ENST00000415188 WIZO95785 1651 aa25.96■■□□□ 1.75
USP4-203ENST00000415188 LAMC3Q9Y6N6 1575 aa25.9■■□□□ 1.74
USP4-203ENST00000415188 DNAJC5Q9H3Z4 198 aa25.81■■□□□ 1.72
USP4-203ENST00000415188 RSF1Q96T23 1441 aaPredicted RBP25.81■■□□□ 1.72
USP4-203ENST00000415188 THOC2Q8NI27 1593 aaKnown RBP25.78■■□□□ 1.72
USP4-203ENST00000415188 CADPSQ9ULU8 1353 aa25.77■■□□□ 1.72
USP4-203ENST00000415188 PDS5BQ9NTI5 1447 aa25.76■■□□□ 1.71
USP4-203ENST00000415188 KIF21AQ7Z4S6 1674 aa25.75■■□□□ 1.71
USP4-203ENST00000415188 TOP2AP11388 1531 aaKnown RBP25.63■■□□□ 1.69
USP4-203ENST00000415188 MRC2Q9UBG0 1479 aa25.55■■□□□ 1.68
USP4-203ENST00000415188 CFTRP13569 1480 aa25.51■■□□□ 1.67
USP4-203ENST00000415188 SUPT5HO00267 1087 aaKnown RBP25.49■■□□□ 1.67
USP4-203ENST00000415188 FANCD2Q9BXW9 1451 aa25.48■■□□□ 1.67
USP4-203ENST00000415188 CEP164Q9UPV0 1460 aa25.48■■□□□ 1.67
USP4-203ENST00000415188 WDR62O43379 1518 aa25.47■■□□□ 1.67
USP4-203ENST00000415188 CCDC88BA6NC98 1476 aa25.36■■□□□ 1.65
USP4-203ENST00000415188 URB2Q14146 1524 aaKnown RBP25.28■■□□□ 1.64
USP4-203ENST00000415188 PRDM2Q13029 1718 aa25.21■■□□□ 1.63
USP4-203ENST00000415188 TOPBP1Q92547 1522 aa25.02■■□□□ 1.6
USP4-203ENST00000415188 IFT140Q96RY7 1462 aa24.96■■□□□ 1.59
USP4-203ENST00000415188 ZNF608Q9ULD9 1512 aaPredicted RBP24.95■■□□□ 1.58
USP4-203ENST00000415188 DNMBPQ6XZF7 1577 aa24.93■■□□□ 1.58
USP4-203ENST00000415188 ABCC8Q09428 1581 aa24.93■■□□□ 1.58
USP4-203ENST00000415188 OSCARQ8IYS5 282 aa24.88■■□□□ 1.57
USP4-203ENST00000415188 CHIC1Q5VXU3 224 aa24.85■■□□□ 1.57
USP4-203ENST00000415188 TRIM41Q8WV44 630 aa24.81■■□□□ 1.56
USP4-203ENST00000415188 EIF4G3O43432 1585 aaKnown RBP24.79■■□□□ 1.56
USP4-203ENST00000415188 POLA1P09884 1462 aaPredicted RBP24.78■■□□□ 1.56
USP4-203ENST00000415188 TARBP1Q13395 1621 aaKnown RBP24.77■■□□□ 1.56
USP4-203ENST00000415188 AQRO60306 1485 aaKnown RBP eCLIP24.74■■□□□ 1.552e-6■■■■■ 28.4
USP4-203ENST00000415188 RAD54L2Q9Y4B4 1467 aa24.72■■□□□ 1.55
USP4-203ENST00000415188 CUX1P39880 1505 aa24.68■■□□□ 1.54
USP4-203ENST00000415188 SOGA1O94964 1423 aa24.67■■□□□ 1.54
USP4-203ENST00000415188 FGD5Q6ZNL6 1462 aa24.67■■□□□ 1.54
USP4-203ENST00000415188 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
USP4-203ENST00000415188 CHD1O14646 1710 aa24.55■■□□□ 1.52
USP4-203ENST00000415188 FBLN2P98095 1184 aa24.54■■□□□ 1.52
USP4-203ENST00000415188 RIMBP3CA6NJZ7 1639 aa24.54■■□□□ 1.52
USP4-203ENST00000415188 RIMBP3BA6NNM3 1639 aa24.54■■□□□ 1.52
USP4-203ENST00000415188 RIMBP3Q9UFD9 1639 aa24.54■■□□□ 1.52
USP4-203ENST00000415188 SNAPC4Q5SXM2 1469 aa24.49■■□□□ 1.51
USP4-203ENST00000415188 ARHGEF11O15085 1522 aa24.49■■□□□ 1.51
USP4-203ENST00000415188 WDR97A6NE52 1622 aa24.48■■□□□ 1.51
USP4-203ENST00000415188 GRIN2BQ13224 1484 aa24.42■■□□□ 1.5
USP4-203ENST00000415188 MAGI1Q96QZ7 1491 aaPredicted RBP24.39■■□□□ 1.49
USP4-203ENST00000415188 GAPVD1Q14C86 1478 aa24.37■■□□□ 1.49
USP4-203ENST00000415188 ABCA10Q8WWZ4 1543 aa24.37■■□□□ 1.49
USP4-203ENST00000415188 CHMP7Q8WUX9 453 aaPredicted RBP24.37■■□□□ 1.49
USP4-203ENST00000415188 PBRM1Q86U86 1689 aa24.33■■□□□ 1.48
USP4-203ENST00000415188 WRNQ14191 1432 aaPredicted RBP eCLIP24.32■■□□□ 1.48
USP4-203ENST00000415188 SYNJ1O43426 1573 aa24.32■■□□□ 1.48
USP4-203ENST00000415188 CYB5RLQ6IPT4 315 aa24.32■■□□□ 1.48
USP4-203ENST00000415188 ABCA5Q8WWZ7 1642 aa24.31■■□□□ 1.48
USP4-203ENST00000415188 SYNJ2O15056 1496 aa24.31■■□□□ 1.48
USP4-203ENST00000415188 TOP2BQ02880 1626 aa24.3■■□□□ 1.48
USP4-203ENST00000415188 BIVM-ERCC5R4GMW8 1640 aa24.29■■□□□ 1.48
USP4-203ENST00000415188 CLASP1Q7Z460 1538 aa24.28■■□□□ 1.48
USP4-203ENST00000415188 ARAP1Q96P48 1450 aa24.28■■□□□ 1.48
USP4-203ENST00000415188 ADAMTS12P58397 1594 aa24.13■■□□□ 1.45
USP4-203ENST00000415188 GRIN2AQ12879 1464 aa24.11■■□□□ 1.45
USP4-203ENST00000415188 FHAD1B1AJZ9 1412 aa24.06■■□□□ 1.44
USP4-203ENST00000415188 ERICH3Q5RHP9 1530 aa24.05■■□□□ 1.44
USP4-203ENST00000415188 NUP160Q12769 1436 aa24.03■■□□□ 1.44
USP4-203ENST00000415188 CEP170Q5SW79 1584 aa24.03■■□□□ 1.44
USP4-203ENST00000415188 TRHP20396 242 aaPredicted RBP23.98■■□□□ 1.43
USP4-203ENST00000415188 ERCC6L2Q5T890 1561 aa23.97■■□□□ 1.43
USP4-203ENST00000415188 SHROOM2Q13796 1616 aa23.87■■□□□ 1.41
USP4-203ENST00000415188 LOC105371045A0A1W2PR82 267 aa23.85■■□□□ 1.41
USP4-203ENST00000415188 KIF27Q86VH2 1401 aa23.84■■□□□ 1.41
USP4-203ENST00000415188 IGF1RP08069 1367 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms