RNA–Protein interactions for RNA: ENST00000379792.6

HERPUD1-203, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 5 BASIC

Gene HERPUD1, Length 1,782 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-203ENST00000379792 NISCHQ9Y2I1 1504 aa32.93■■■□□ 2.86
HERPUD1-203ENST00000379792 CCDC180Q9P1Z9 1646 aa28.87■■■□□ 2.21
HERPUD1-203ENST00000379792 ABCC9O60706 1549 aa28.3■■■□□ 2.12
HERPUD1-203ENST00000379792 ZCCHC6Q5VYS8 1495 aaKnown RBP27.54■■■□□ 2
HERPUD1-203ENST00000379792 DCAF8L2P0C7V8 631 aa27.49■■□□□ 1.99
HERPUD1-203ENST00000379792 RB1CC1Q8TDY2 1594 aa27.23■■□□□ 1.95
HERPUD1-203ENST00000379792 NACADO15069 1562 aa27.18■■□□□ 1.94
HERPUD1-203ENST00000379792 DCAF1Q9Y4B6 1507 aa27.17■■□□□ 1.94
HERPUD1-203ENST00000379792 MYO15BQ96JP2 1530 aa27.02■■□□□ 1.92
HERPUD1-203ENST00000379792 SHROOM4Q9ULL8 1493 aa26.63■■□□□ 1.85
HERPUD1-203ENST00000379792 UNC13AQ9UPW8 1703 aa26.57■■□□□ 1.84
HERPUD1-203ENST00000379792 SCRIBQ14160 1630 aa26.56■■□□□ 1.84
HERPUD1-203ENST00000379792 PABPN1Q86U42 306 aaKnown RBP eCLIP26.41■■□□□ 1.82
HERPUD1-203ENST00000379792 BICRAQ9NZM4 1560 aa26.38■■□□□ 1.81
HERPUD1-203ENST00000379792 DNAJC5BQ9UF47 199 aa26.09■■□□□ 1.77
HERPUD1-203ENST00000379792 EIF4G1Q04637 1599 aaKnown RBP25.7■■□□□ 1.7
HERPUD1-203ENST00000379792 CECR2Q9BXF3 1484 aa25.67■■□□□ 1.7
HERPUD1-203ENST00000379792 CC2D2AQ9P2K1 1620 aa25.62■■□□□ 1.69
HERPUD1-203ENST00000379792 MROH2BQ7Z745 1585 aa25.45■■□□□ 1.66
HERPUD1-203ENST00000379792 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
HERPUD1-203ENST00000379792 SMARCA4P51532 1647 aa25.4■■□□□ 1.66
HERPUD1-203ENST00000379792 RSF1Q96T23 1441 aaPredicted RBP25.39■■□□□ 1.65
HERPUD1-203ENST00000379792 SUPT5HO00267 1087 aaKnown RBP25.39■■□□□ 1.65
HERPUD1-203ENST00000379792 WIZO95785 1651 aa25.2■■□□□ 1.62
HERPUD1-203ENST00000379792 ATAD2BQ9ULI0 1458 aa25.13■■□□□ 1.61
HERPUD1-203ENST00000379792 NCAPD3P42695 1498 aa25.08■■□□□ 1.61
HERPUD1-203ENST00000379792 SMARCA2P51531 1590 aa25.07■■□□□ 1.6
HERPUD1-203ENST00000379792 PEG3Q9GZU2 1588 aa25.07■■□□□ 1.6
HERPUD1-203ENST00000379792 BAZ1BQ9UIG0 1483 aaKnown RBP24.96■■□□□ 1.59
HERPUD1-203ENST00000379792 HMGXB3Q12766 1538 aa24.94■■□□□ 1.58
HERPUD1-203ENST00000379792 TOP2AP11388 1531 aaKnown RBP24.9■■□□□ 1.58
HERPUD1-203ENST00000379792 CCDC88BA6NC98 1476 aa24.68■■□□□ 1.54
HERPUD1-203ENST00000379792 NESP48681 1621 aa24.45■■□□□ 1.5
HERPUD1-203ENST00000379792 LAMC3Q9Y6N6 1575 aa24.43■■□□□ 1.5
HERPUD1-203ENST00000379792 ERCC6Q03468 1493 aa24.42■■□□□ 1.5
HERPUD1-203ENST00000379792 CADPSQ9ULU8 1353 aa24.33■■□□□ 1.49
HERPUD1-203ENST00000379792 CFTRP13569 1480 aa24.3■■□□□ 1.48
HERPUD1-203ENST00000379792 PDS5BQ9NTI5 1447 aa24.27■■□□□ 1.48
HERPUD1-203ENST00000379792 CUX2O14529 1486 aa24.26■■□□□ 1.47
HERPUD1-203ENST00000379792 KIF21AQ7Z4S6 1674 aa24.17■■□□□ 1.46
HERPUD1-203ENST00000379792 THOC2Q8NI27 1593 aaKnown RBP24.14■■□□□ 1.46
HERPUD1-203ENST00000379792 FANCD2Q9BXW9 1451 aa24.06■■□□□ 1.44
HERPUD1-203ENST00000379792 PRDM2Q13029 1718 aa24.05■■□□□ 1.44
HERPUD1-203ENST00000379792 CEP164Q9UPV0 1460 aa24.02■■□□□ 1.44
HERPUD1-203ENST00000379792 CHIC1Q5VXU3 224 aa24.01■■□□□ 1.43
HERPUD1-203ENST00000379792 MRC2Q9UBG0 1479 aa24.01■■□□□ 1.43
HERPUD1-203ENST00000379792 ABCC8Q09428 1581 aa24.01■■□□□ 1.43
HERPUD1-203ENST00000379792 WDR62O43379 1518 aa23.95■■□□□ 1.42
HERPUD1-203ENST00000379792 WRNQ14191 1432 aaPredicted RBP eCLIP23.9■■□□□ 1.42
HERPUD1-203ENST00000379792 TRIM41Q8WV44 630 aa23.87■■□□□ 1.41
HERPUD1-203ENST00000379792 CUX1P39880 1505 aa23.82■■□□□ 1.4
HERPUD1-203ENST00000379792 SYNJ1O43426 1573 aa23.81■■□□□ 1.4
HERPUD1-203ENST00000379792 URB2Q14146 1524 aaKnown RBP23.79■■□□□ 1.4
HERPUD1-203ENST00000379792 TOPBP1Q92547 1522 aa23.74■■□□□ 1.39
HERPUD1-203ENST00000379792 TOP2BQ02880 1626 aa23.72■■□□□ 1.39
HERPUD1-203ENST00000379792 DNMBPQ6XZF7 1577 aa23.72■■□□□ 1.39
HERPUD1-203ENST00000379792 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
HERPUD1-203ENST00000379792 DNAJC5Q9H3Z4 198 aa23.65■■□□□ 1.38
HERPUD1-203ENST00000379792 FGD5Q6ZNL6 1462 aa23.64■■□□□ 1.37
HERPUD1-203ENST00000379792 POLA1P09884 1462 aaPredicted RBP23.59■■□□□ 1.37
HERPUD1-203ENST00000379792 RAD54L2Q9Y4B4 1467 aa23.55■■□□□ 1.36
HERPUD1-203ENST00000379792 SOGA1O94964 1423 aa23.54■■□□□ 1.36
HERPUD1-203ENST00000379792 IFT140Q96RY7 1462 aa23.53■■□□□ 1.36
HERPUD1-203ENST00000379792 FAM9AQ8IZU1 332 aaPredicted RBP23.47■■□□□ 1.35
HERPUD1-203ENST00000379792 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
HERPUD1-203ENST00000379792 TARBP1Q13395 1621 aaKnown RBP23.4■■□□□ 1.34
HERPUD1-203ENST00000379792 ABCA10Q8WWZ4 1543 aa23.39■■□□□ 1.34
HERPUD1-203ENST00000379792 ZNF608Q9ULD9 1512 aaPredicted RBP23.39■■□□□ 1.34
HERPUD1-203ENST00000379792 TDRD9Q8NDG6 1382 aaKnown RBP23.39■■□□□ 1.33
HERPUD1-203ENST00000379792 KIF27Q86VH2 1401 aa23.34■■□□□ 1.33
HERPUD1-203ENST00000379792 EIF4G3O43432 1585 aaKnown RBP23.31■■□□□ 1.32
HERPUD1-203ENST00000379792 WDR97A6NE52 1622 aa23.31■■□□□ 1.32
HERPUD1-203ENST00000379792 AQRO60306 1485 aaKnown RBP eCLIP23.3■■□□□ 1.324e-7■■■■■ 42.8
HERPUD1-203ENST00000379792 CSRNP3Q8WYN3 585 aa23.26■■□□□ 1.31
HERPUD1-203ENST00000379792 EEA1Q15075 1411 aa23.25■■□□□ 1.31
HERPUD1-203ENST00000379792 GAPVD1Q14C86 1478 aa23.25■■□□□ 1.31
HERPUD1-203ENST00000379792 ABCA5Q8WWZ7 1642 aa23.22■■□□□ 1.31
HERPUD1-203ENST00000379792 OSCARQ8IYS5 282 aa23.22■■□□□ 1.31
HERPUD1-203ENST00000379792 IGF1RP08069 1367 aa23.21■■□□□ 1.31
HERPUD1-203ENST00000379792 EHMT2Q96KQ7 1210 aa23.2■■□□□ 1.3
HERPUD1-203ENST00000379792 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
HERPUD1-203ENST00000379792 LOC105371045A0A1W2PR82 267 aa23.12■■□□□ 1.29
HERPUD1-203ENST00000379792 ERICH3Q5RHP9 1530 aa23.09■■□□□ 1.29
HERPUD1-203ENST00000379792 PBRM1Q86U86 1689 aa23.09■■□□□ 1.29
HERPUD1-203ENST00000379792 CARMIL1Q5VZK9 1371 aa23.08■■□□□ 1.29
HERPUD1-203ENST00000379792 SNAPC4Q5SXM2 1469 aa23.05■■□□□ 1.28
HERPUD1-203ENST00000379792 PRXQ9BXM0 1461 aa23.05■■□□□ 1.28
HERPUD1-203ENST00000379792 MAGI1Q96QZ7 1491 aaPredicted RBP23.04■■□□□ 1.28
HERPUD1-203ENST00000379792 CHD1O14646 1710 aa23.03■■□□□ 1.28
HERPUD1-203ENST00000379792 RAPGEF2Q9Y4G8 1499 aa23■■□□□ 1.27
HERPUD1-203ENST00000379792 CUL7Q14999 1698 aa22.98■■□□□ 1.27
HERPUD1-203ENST00000379792 FHAD1B1AJZ9 1412 aa22.98■■□□□ 1.27
HERPUD1-203ENST00000379792 FBLN2P98095 1184 aa22.97■■□□□ 1.27
HERPUD1-203ENST00000379792 KIF21BO75037 1637 aa22.97■■□□□ 1.27
HERPUD1-203ENST00000379792 ADAMTS12P58397 1594 aa22.96■■□□□ 1.27
HERPUD1-203ENST00000379792 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
HERPUD1-203ENST00000379792 SYNJ2O15056 1496 aa22.94■■□□□ 1.26
HERPUD1-203ENST00000379792 GOLGA3Q08378 1498 aa22.94■■□□□ 1.26
HERPUD1-203ENST00000379792 CHMP7Q8WUX9 453 aaPredicted RBP22.94■■□□□ 1.26
HERPUD1-203ENST00000379792 GRIN2AQ12879 1464 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms