RNA–Protein interactions for RNA: ENST00000622493.4

CLTCL1-212, Transcript of clathrin heavy chain like 1, humanhuman

TSL 2 BASIC

Gene CLTCL1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-212ENST00000622493 NISCHQ9Y2I1 1504 aa32.82■■■□□ 2.84
CLTCL1-212ENST00000622493 CCDC180Q9P1Z9 1646 aa28.79■■■□□ 2.2
CLTCL1-212ENST00000622493 ZCCHC6Q5VYS8 1495 aaKnown RBP27.52■■■□□ 2
CLTCL1-212ENST00000622493 ABCC9O60706 1549 aa27.34■■□□□ 1.97
CLTCL1-212ENST00000622493 DCAF1Q9Y4B6 1507 aa27.22■■□□□ 1.95
CLTCL1-212ENST00000622493 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
CLTCL1-212ENST00000622493 MYO15BQ96JP2 1530 aa27.02■■□□□ 1.92
CLTCL1-212ENST00000622493 NACADO15069 1562 aa26.88■■□□□ 1.89
CLTCL1-212ENST00000622493 RB1CC1Q8TDY2 1594 aa26.7■■□□□ 1.86
CLTCL1-212ENST00000622493 SHROOM4Q9ULL8 1493 aa26.43■■□□□ 1.82
CLTCL1-212ENST00000622493 SCRIBQ14160 1630 aa26.32■■□□□ 1.8
CLTCL1-212ENST00000622493 UNC13AQ9UPW8 1703 aa26.08■■□□□ 1.76
CLTCL1-212ENST00000622493 BICRAQ9NZM4 1560 aa25.84■■□□□ 1.73
CLTCL1-212ENST00000622493 PABPN1Q86U42 306 aaKnown RBP eCLIP25.7■■□□□ 1.7
CLTCL1-212ENST00000622493 CECR2Q9BXF3 1484 aa25.45■■□□□ 1.67
CLTCL1-212ENST00000622493 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.65
CLTCL1-212ENST00000622493 SUPT5HO00267 1087 aaKnown RBP25.34■■□□□ 1.65
CLTCL1-212ENST00000622493 RSF1Q96T23 1441 aaPredicted RBP25.34■■□□□ 1.65
CLTCL1-212ENST00000622493 MROH2BQ7Z745 1585 aa25.3■■□□□ 1.64
CLTCL1-212ENST00000622493 SMARCA4P51532 1647 aa25.27■■□□□ 1.64
CLTCL1-212ENST00000622493 EIF4G1Q04637 1599 aaKnown RBP25.1■■□□□ 1.61
CLTCL1-212ENST00000622493 WIZO95785 1651 aa25.06■■□□□ 1.6
CLTCL1-212ENST00000622493 PEG3Q9GZU2 1588 aa25.03■■□□□ 1.6
CLTCL1-212ENST00000622493 SMARCA2P51531 1590 aa24.95■■□□□ 1.58
CLTCL1-212ENST00000622493 ATAD2BQ9ULI0 1458 aa24.93■■□□□ 1.58
CLTCL1-212ENST00000622493 TOP2AP11388 1531 aaKnown RBP24.85■■□□□ 1.57
CLTCL1-212ENST00000622493 NCAPD3P42695 1498 aa24.8■■□□□ 1.56
CLTCL1-212ENST00000622493 CC2D2AQ9P2K1 1620 aa24.78■■□□□ 1.56
CLTCL1-212ENST00000622493 BAZ1BQ9UIG0 1483 aaKnown RBP24.77■■□□□ 1.56
CLTCL1-212ENST00000622493 HMGXB3Q12766 1538 aa24.75■■□□□ 1.55
CLTCL1-212ENST00000622493 CCDC88BA6NC98 1476 aa24.57■■□□□ 1.52
CLTCL1-212ENST00000622493 DNAJC5BQ9UF47 199 aa24.31■■□□□ 1.48
CLTCL1-212ENST00000622493 CFTRP13569 1480 aa24.16■■□□□ 1.46
CLTCL1-212ENST00000622493 CHIC1Q5VXU3 224 aa24.16■■□□□ 1.46
CLTCL1-212ENST00000622493 CADPSQ9ULU8 1353 aa24.13■■□□□ 1.45
CLTCL1-212ENST00000622493 PRDM2Q13029 1718 aa24.03■■□□□ 1.44
CLTCL1-212ENST00000622493 LAMC3Q9Y6N6 1575 aa24.01■■□□□ 1.43
CLTCL1-212ENST00000622493 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
CLTCL1-212ENST00000622493 ABCC8Q09428 1581 aa23.91■■□□□ 1.42
CLTCL1-212ENST00000622493 NESP48681 1621 aa23.9■■□□□ 1.42
CLTCL1-212ENST00000622493 WRNQ14191 1432 aaPredicted RBP eCLIP23.87■■□□□ 1.41
CLTCL1-212ENST00000622493 FANCD2Q9BXW9 1451 aa23.83■■□□□ 1.41
CLTCL1-212ENST00000622493 PDS5BQ9NTI5 1447 aa23.83■■□□□ 1.4
CLTCL1-212ENST00000622493 SYNJ1O43426 1573 aa23.74■■□□□ 1.39
CLTCL1-212ENST00000622493 CEP164Q9UPV0 1460 aa23.72■■□□□ 1.39
CLTCL1-212ENST00000622493 TOP2BQ02880 1626 aa23.72■■□□□ 1.39
CLTCL1-212ENST00000622493 BIVM-ERCC5R4GMW8 1640 aa23.7■■□□□ 1.38
CLTCL1-212ENST00000622493 CUX1P39880 1505 aa23.67■■□□□ 1.38
CLTCL1-212ENST00000622493 KIF21AQ7Z4S6 1674 aa23.65■■□□□ 1.38
CLTCL1-212ENST00000622493 DNMBPQ6XZF7 1577 aa23.59■■□□□ 1.37
CLTCL1-212ENST00000622493 TOPBP1Q92547 1522 aa23.54■■□□□ 1.36
CLTCL1-212ENST00000622493 URB2Q14146 1524 aaKnown RBP23.53■■□□□ 1.36
CLTCL1-212ENST00000622493 ERCC6Q03468 1493 aa23.52■■□□□ 1.36
CLTCL1-212ENST00000622493 MRC2Q9UBG0 1479 aa23.5■■□□□ 1.35
CLTCL1-212ENST00000622493 FGD5Q6ZNL6 1462 aa23.47■■□□□ 1.35
CLTCL1-212ENST00000622493 EEA1Q15075 1411 aa23.45■■□□□ 1.34
CLTCL1-212ENST00000622493 SOGA1O94964 1423 aa23.42■■□□□ 1.34
CLTCL1-212ENST00000622493 POLA1P09884 1462 aaPredicted RBP23.41■■□□□ 1.34
CLTCL1-212ENST00000622493 WDR62O43379 1518 aa23.4■■□□□ 1.34
CLTCL1-212ENST00000622493 FAM9AQ8IZU1 332 aaPredicted RBP23.37■■□□□ 1.33
CLTCL1-212ENST00000622493 THOC2Q8NI27 1593 aaKnown RBP23.35■■□□□ 1.33
CLTCL1-212ENST00000622493 RUSC2Q8N2Y8 1516 aa23.33■■□□□ 1.32
CLTCL1-212ENST00000622493 KIF27Q86VH2 1401 aa23.31■■□□□ 1.32
CLTCL1-212ENST00000622493 ABCA10Q8WWZ4 1543 aa23.3■■□□□ 1.32
CLTCL1-212ENST00000622493 CSRNP3Q8WYN3 585 aa23.29■■□□□ 1.32
CLTCL1-212ENST00000622493 RAD54L2Q9Y4B4 1467 aa23.28■■□□□ 1.32
CLTCL1-212ENST00000622493 CUX2O14529 1486 aa23.26■■□□□ 1.31
CLTCL1-212ENST00000622493 WDR97A6NE52 1622 aa23.22■■□□□ 1.31
CLTCL1-212ENST00000622493 TARBP1Q13395 1621 aaKnown RBP23.22■■□□□ 1.31
CLTCL1-212ENST00000622493 IFT140Q96RY7 1462 aa23.2■■□□□ 1.3
CLTCL1-212ENST00000622493 LOC105371045A0A1W2PR82 267 aa23.16■■□□□ 1.3
CLTCL1-212ENST00000622493 IGF1RP08069 1367 aa23.11■■□□□ 1.29
CLTCL1-212ENST00000622493 KIF21BO75037 1637 aa23.11■■□□□ 1.29
CLTCL1-212ENST00000622493 ABCA5Q8WWZ7 1642 aa23.11■■□□□ 1.29
CLTCL1-212ENST00000622493 TDRD9Q8NDG6 1382 aaKnown RBP23.09■■□□□ 1.29
CLTCL1-212ENST00000622493 GAPVD1Q14C86 1478 aa23.08■■□□□ 1.29
CLTCL1-212ENST00000622493 PRXQ9BXM0 1461 aa23.08■■□□□ 1.28
CLTCL1-212ENST00000622493 GOLGA3Q08378 1498 aa23.06■■□□□ 1.28
CLTCL1-212ENST00000622493 ERICH3Q5RHP9 1530 aa23.04■■□□□ 1.28
CLTCL1-212ENST00000622493 CARMIL1Q5VZK9 1371 aa22.99■■□□□ 1.27
CLTCL1-212ENST00000622493 ZNF608Q9ULD9 1512 aaPredicted RBP22.99■■□□□ 1.27
CLTCL1-212ENST00000622493 CUL7Q14999 1698 aa22.99■■□□□ 1.27
CLTCL1-212ENST00000622493 AQRO60306 1485 aaKnown RBP eCLIP22.99■■□□□ 1.27
CLTCL1-212ENST00000622493 EHMT2Q96KQ7 1210 aa22.98■■□□□ 1.27
CLTCL1-212ENST00000622493 RAPGEF2Q9Y4G8 1499 aa22.98■■□□□ 1.27
CLTCL1-212ENST00000622493 GRIN2BQ13224 1484 aa22.96■■□□□ 1.27
CLTCL1-212ENST00000622493 PBRM1Q86U86 1689 aa22.95■■□□□ 1.26
CLTCL1-212ENST00000622493 EIF4G3O43432 1585 aaKnown RBP22.95■■□□□ 1.26
CLTCL1-212ENST00000622493 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
CLTCL1-212ENST00000622493 UBTFP17480 764 aaKnown RBP22.93■■□□□ 1.26
CLTCL1-212ENST00000622493 FHAD1B1AJZ9 1412 aa22.85■■□□□ 1.25
CLTCL1-212ENST00000622493 ADAMTS12P58397 1594 aa22.81■■□□□ 1.24
CLTCL1-212ENST00000622493 MAGI1Q96QZ7 1491 aaPredicted RBP22.81■■□□□ 1.24
CLTCL1-212ENST00000622493 SNAPC4Q5SXM2 1469 aa22.79■■□□□ 1.24
CLTCL1-212ENST00000622493 CEP162Q5TB80 1403 aa22.76■■□□□ 1.23
CLTCL1-212ENST00000622493 SYNJ2O15056 1496 aa22.71■■□□□ 1.23
CLTCL1-212ENST00000622493 CTTNBP2Q8WZ74 1663 aa22.66■■□□□ 1.22
CLTCL1-212ENST00000622493 CLIP1P30622 1438 aa22.66■■□□□ 1.22
CLTCL1-212ENST00000622493 GRIN2AQ12879 1464 aa22.66■■□□□ 1.22
CLTCL1-212ENST00000622493 CHMP7Q8WUX9 453 aaPredicted RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms