RNA–Protein interactions for RNA: ENST00000380494.9

COL4A3BP-203, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 2 BASIC

Gene COL4A3BP, Length 5,651 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-203ENST00000380494 DCAF8L2P0C7V8 631 aa27.94■■■□□ 2.06
COL4A3BP-203ENST00000380494 PELP1Q8IZL8 1130 aaKnown RBP27.65■■■□□ 2.02
COL4A3BP-203ENST00000380494 SUPT5HO00267 1087 aaKnown RBP27.39■■□□□ 1.97
COL4A3BP-203ENST00000380494 NISCHQ9Y2I1 1504 aa27.14■■□□□ 1.94
COL4A3BP-203ENST00000380494 MYT1Q01538 1121 aa27.04■■□□□ 1.92
COL4A3BP-203ENST00000380494 SHROOM4Q9ULL8 1493 aa26.64■■□□□ 1.85
COL4A3BP-203ENST00000380494 CENPBP07199 599 aaPredicted RBP26.59■■□□□ 1.85
COL4A3BP-203ENST00000380494 ZEB1P37275 1124 aaPredicted RBP26.55■■□□□ 1.84
COL4A3BP-203ENST00000380494 PCGF6Q9BYE7 350 aa26.42■■□□□ 1.82
COL4A3BP-203ENST00000380494 ERICH6Q7L0X2 663 aa26.34■■□□□ 1.81
COL4A3BP-203ENST00000380494 APLP2Q06481 763 aa26.32■■□□□ 1.8
COL4A3BP-203ENST00000380494 CCER1Q8TC90 406 aaPredicted RBP26.32■■□□□ 1.8
COL4A3BP-203ENST00000380494 EHMT2Q96KQ7 1210 aa26.26■■□□□ 1.79
COL4A3BP-203ENST00000380494 FAM9AQ8IZU1 332 aaPredicted RBP25.75■■□□□ 1.71
COL4A3BP-203ENST00000380494 NEFLP07196 543 aa25.74■■□□□ 1.71
COL4A3BP-203ENST00000380494 HRCP23327 699 aa25.61■■□□□ 1.69
COL4A3BP-203ENST00000380494 TTBK1Q5TCY1 1321 aaPredicted RBP25.6■■□□□ 1.69
COL4A3BP-203ENST00000380494 TRIM41Q8WV44 630 aa25.5■■□□□ 1.67
COL4A3BP-203ENST00000380494 YTHDC1Q96MU7 727 aaKnown RBP25.49■■□□□ 1.67
COL4A3BP-203ENST00000380494 TRIM26Q12899 539 aaPredicted RBP25.45■■□□□ 1.66
COL4A3BP-203ENST00000380494 UBTFP17480 764 aaKnown RBP25.08■■□□□ 1.61
COL4A3BP-203ENST00000380494 RANGAP1P46060 587 aaPredicted RBP24.99■■□□□ 1.59
COL4A3BP-203ENST00000380494 DAXXQ9UER7 740 aaPredicted RBP24.96■■□□□ 1.59
COL4A3BP-203ENST00000380494 ATP1B4Q9UN42 357 aaPredicted RBP24.83■■□□□ 1.57
COL4A3BP-203ENST00000380494 PPARGC1BQ86YN6 1023 aaKnown RBP24.72■■□□□ 1.55
COL4A3BP-203ENST00000380494 RTL5Q5HYW3 569 aaPredicted RBP24.71■■□□□ 1.55
COL4A3BP-203ENST00000380494 DIEXFQ68CQ4 756 aaKnown RBP24.7■■□□□ 1.54
COL4A3BP-203ENST00000380494 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
COL4A3BP-203ENST00000380494 LOC105371045A0A1W2PR82 267 aa24.49■■□□□ 1.51
COL4A3BP-203ENST00000380494 GTF3C3Q9Y5Q9 886 aa24.46■■□□□ 1.51
COL4A3BP-203ENST00000380494 ZNF316A6NFI3 1004 aaPredicted RBP24.42■■□□□ 1.5
COL4A3BP-203ENST00000380494 HNRNPUL2Q1KMD3 747 aaKnown RBP24.36■■□□□ 1.49
COL4A3BP-203ENST00000380494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.34■■□□□ 1.49
COL4A3BP-203ENST00000380494 ITGAEP38570 1179 aa24.26■■□□□ 1.47
COL4A3BP-203ENST00000380494 ACIN1Q9UKV3 1341 aaKnown RBP24.24■■□□□ 1.47
COL4A3BP-203ENST00000380494 POLR3GLQ9BT43 218 aa24.21■■□□□ 1.47
COL4A3BP-203ENST00000380494 CDK11AQ9UQ88 783 aaPredicted RBP24.21■■□□□ 1.47
COL4A3BP-203ENST00000380494 CLSPNQ9HAW4 1339 aa24.14■■□□□ 1.45
COL4A3BP-203ENST00000380494 BCANQ96GW7 911 aa24.04■■□□□ 1.44
COL4A3BP-203ENST00000380494 ANP32CO43423 234 aa23.99■■□□□ 1.43
COL4A3BP-203ENST00000380494 MYT1LQ9UL68 1186 aa23.93■■□□□ 1.42
COL4A3BP-203ENST00000380494 CNGB1Q14028 1251 aaPredicted RBP23.85■■□□□ 1.41
COL4A3BP-203ENST00000380494 ANP32AP39687 249 aaKnown RBP23.84■■□□□ 1.41
COL4A3BP-203ENST00000380494 FAM50AQ14320 339 aaKnown RBP23.73■■□□□ 1.39
COL4A3BP-203ENST00000380494 NEUROD1Q13562 356 aa23.7■■□□□ 1.38
COL4A3BP-203ENST00000380494 DCAF1Q9Y4B6 1507 aa23.67■■□□□ 1.38
COL4A3BP-203ENST00000380494 GLIPR1L2Q4G1C9 344 aa23.64■■□□□ 1.37
COL4A3BP-203ENST00000380494 TRIM52Q96A61 297 aa23.6■■□□□ 1.37
COL4A3BP-203ENST00000380494 SLC4A1APQ9BWU0 796 aaKnown RBP23.56■■□□□ 1.36
COL4A3BP-203ENST00000380494 ZBTB47Q9UFB7 747 aaPredicted RBP23.51■■□□□ 1.35
COL4A3BP-203ENST00000380494 FKBP8Q14318 412 aa23.5■■□□□ 1.35
COL4A3BP-203ENST00000380494 EIF5BO60841 1220 aaKnown RBP23.5■■□□□ 1.35
COL4A3BP-203ENST00000380494 SCAF1Q9H7N4 1312 aaKnown RBP23.46■■□□□ 1.35
COL4A3BP-203ENST00000380494 CANXP27824 592 aaKnown RBP23.42■■□□□ 1.34
COL4A3BP-203ENST00000380494 ANP32BQ92688 251 aaKnown RBP23.42■■□□□ 1.34
COL4A3BP-203ENST00000380494 NPM2Q86SE8 214 aaKnown RBP23.38■■□□□ 1.33
COL4A3BP-203ENST00000380494 ZNF326Q5BKZ1 582 aaKnown RBP23.26■■□□□ 1.31
COL4A3BP-203ENST00000380494 UPF2Q9HAU5 1272 aaKnown RBP23.21■■□□□ 1.31
COL4A3BP-203ENST00000380494 HNRNPUQ00839 825 aaKnown RBP eCLIP23.18■■□□□ 1.3
COL4A3BP-203ENST00000380494 ANP32EQ9BTT0 268 aa23.17■■□□□ 1.3
COL4A3BP-203ENST00000380494 CSRNP3Q8WYN3 585 aa23.15■■□□□ 1.3
COL4A3BP-203ENST00000380494 NBR1Q14596 966 aa23.14■■□□□ 1.3
COL4A3BP-203ENST00000380494 TONSLQ96HA7 1378 aa23.12■■□□□ 1.29
COL4A3BP-203ENST00000380494 NEFMP07197 916 aa23.11■■□□□ 1.29
COL4A3BP-203ENST00000380494 CCDC136Q96JN2 1154 aa23.09■■□□□ 1.29
COL4A3BP-203ENST00000380494 HSP90AA1P07900 732 aaKnown RBP23.06■■□□□ 1.28
COL4A3BP-203ENST00000380494 DDX10Q13206 875 aaKnown RBP23.02■■□□□ 1.28
COL4A3BP-203ENST00000380494 MIER1Q8N108 512 aa23■■□□□ 1.27
COL4A3BP-203ENST00000380494 DDRGK1Q96HY6 314 aa22.99■■□□□ 1.27
COL4A3BP-203ENST00000380494 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.98■■□□□ 1.27
COL4A3BP-203ENST00000380494 BCL11AQ9H165 835 aa22.98■■□□□ 1.27
COL4A3BP-203ENST00000380494 CCDC180Q9P1Z9 1646 aa22.97■■□□□ 1.27
COL4A3BP-203ENST00000380494 FAM9BQ8IZU0 186 aa22.96■■□□□ 1.27
COL4A3BP-203ENST00000380494 TMC1Q8TDI8 760 aa22.81■■□□□ 1.24
COL4A3BP-203ENST00000380494 BECN1Q14457 450 aa22.8■■□□□ 1.24
COL4A3BP-203ENST00000380494 MRS2Q9HD23 443 aa22.79■■□□□ 1.24
COL4A3BP-203ENST00000380494 PPM1GO15355 546 aaPredicted RBP22.77■■□□□ 1.24
COL4A3BP-203ENST00000380494 TRIM44Q96DX7 344 aaPredicted RBP22.73■■□□□ 1.23
COL4A3BP-203ENST00000380494 ERICH6BQ5W0A0 696 aa22.72■■□□□ 1.23
COL4A3BP-203ENST00000380494 TNNT2P45379 298 aaPredicted RBP22.69■■□□□ 1.22
COL4A3BP-203ENST00000380494 P3H3Q8IVL6 736 aa22.68■■□□□ 1.22
COL4A3BP-203ENST00000380494 SLC24A1O60721 1099 aa22.68■■□□□ 1.22
COL4A3BP-203ENST00000380494 IRX6P78412 446 aaPredicted RBP22.68■■□□□ 1.22
COL4A3BP-203ENST00000380494 ARXQ96QS3 562 aa22.67■■□□□ 1.22
COL4A3BP-203ENST00000380494 WDR43Q15061 677 aaKnown RBP eCLIP22.67■■□□□ 1.22
COL4A3BP-203ENST00000380494 NOP58Q9Y2X3 529 aaKnown RBP22.61■■□□□ 1.21
COL4A3BP-203ENST00000380494 GOLGA6L22H0YM25 854 aa22.61■■□□□ 1.21
COL4A3BP-203ENST00000380494 ZCCHC6Q5VYS8 1495 aaKnown RBP22.59■■□□□ 1.21
COL4A3BP-203ENST00000380494 SALL2Q9Y467 1007 aaPredicted RBP22.59■■□□□ 1.21
COL4A3BP-203ENST00000380494 SUPT16HQ9Y5B9 1047 aaKnown RBP22.59■■□□□ 1.21
COL4A3BP-203ENST00000380494 MYO15BQ96JP2 1530 aa22.58■■□□□ 1.21
COL4A3BP-203ENST00000380494 PPP4R2Q9NY27 417 aa22.58■■□□□ 1.21
COL4A3BP-203ENST00000380494 EIF4G2P78344 907 aaKnown RBP eCLIP22.57■■□□□ 1.2
COL4A3BP-203ENST00000380494 PABPN1Q86U42 306 aaKnown RBP eCLIP22.56■■□□□ 1.2
COL4A3BP-203ENST00000380494 ZNF777Q9ULD5 760 aaPredicted RBP22.56■■□□□ 1.2
COL4A3BP-203ENST00000380494 ABCC9O60706 1549 aa22.52■■□□□ 1.2
COL4A3BP-203ENST00000380494 NCLP19338 710 aaKnown RBP22.52■■□□□ 1.2
COL4A3BP-203ENST00000380494 MYH16Q9H6N6 1097 aa22.5■■□□□ 1.19
COL4A3BP-203ENST00000380494 CLIP1P30622 1438 aa22.5■■□□□ 1.19
COL4A3BP-203ENST00000380494 EEA1Q15075 1411 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms