Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TNFAIP3-201ENST00000237289 4432 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.358e-12■■■■□ 20.4
DDX55Q8NHQ9 TNFAIP3-208ENST00000615468 3818 ntTSL 5 BASIC11.07□□□□□ -0.648e-12■■■■□ 20.4
DDX55Q8NHQ9 TNFAIP3-210ENST00000620204 3817 ntTSL 5 BASIC10.38□□□□□ -0.758e-12■■■■□ 20.4
DDX55Q8NHQ9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.216e-30■■■■□ 20.4
DDX55Q8NHQ9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC22.62■■□□□ 1.216e-30■■■■□ 20.4
DDX55Q8NHQ9 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.816e-30■■■■□ 20.4
DDX55Q8NHQ9 NME1-206ENST00000475573 781 ntTSL 319.47■□□□□ 0.716e-30■■■■□ 20.4
DDX55Q8NHQ9 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.36e-30■■■■□ 20.4
DDX55Q8NHQ9 NME1-209ENST00000511355 1645 ntTSL 5 BASIC15.76■□□□□ 0.116e-30■■■■□ 20.4
DDX55Q8NHQ9 NME1-NME2-201ENST00000376392 894 ntTSL 5 BASIC14.52□□□□□ -0.096e-30■■■■□ 20.4
DDX55Q8NHQ9 AES-206ENST00000586742 1666 ntTSL 322.49■■□□□ 1.195e-8■■■■□ 20.3
DDX55Q8NHQ9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.12■□□□□ 0.655e-8■■■■□ 20.3
DDX55Q8NHQ9 RBM39-225ENST00000465158 825 ntTSL 27.68□□□□□ -1.182e-26■■■■□ 20.3
DDX55Q8NHQ9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.66■□□□□ 0.91e-6■■■■□ 20.3
DDX55Q8NHQ9 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.081e-6■■■■□ 20.3
DDX55Q8NHQ9 TRIM41-204ENST00000508930 3834 ntTSL 1 (best)15.09■□□□□ 0.011e-6■■■■□ 20.3
DDX55Q8NHQ9 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC36■■■■□ 3.352e-7■■■■□ 20.3
DDX55Q8NHQ9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC34.3■■■■□ 3.082e-7■■■■□ 20.3
DDX55Q8NHQ9 HAGHL-202ENST00000389701 1295 ntTSL 1 (best)29.12■■■□□ 2.252e-7■■■■□ 20.3
DDX55Q8NHQ9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.45■■□□□ 1.822e-7■■■■□ 20.3
DDX55Q8NHQ9 HAGHL-215ENST00000567696 2199 ntTSL 223.85■■□□□ 1.412e-7■■■■□ 20.3
DDX55Q8NHQ9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.242e-7■■■■□ 20.3
DDX55Q8NHQ9 HAGHL-210ENST00000563156 572 ntTSL 414.39□□□□□ -0.112e-7■■■■□ 20.3
DDX55Q8NHQ9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41e-7■■■■□ 20.3
DDX55Q8NHQ9 HNRNPM-205ENST00000596295 910 ntTSL 321.94■■□□□ 1.11e-7■■■■□ 20.3
DDX55Q8NHQ9 HNRNPM-214ENST00000600806 2373 ntTSL 520.53■□□□□ 0.881e-7■■■■□ 20.3
DDX55Q8NHQ9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.861e-7■■■■□ 20.3
DDX55Q8NHQ9 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.671e-7■■■■□ 20.3
DDX55Q8NHQ9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.44■■□□□ 1.822e-6■■■■□ 20.3
DDX55Q8NHQ9 ILF3-221ENST00000591649 2579 ntTSL 214.84□□□□□ -0.031e-19■■■■□ 20.2
DDX55Q8NHQ9 ILF3-205ENST00000586544 3859 ntTSL 1 (best)10.86□□□□□ -0.671e-19■■■■□ 20.2
DDX55Q8NHQ9 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.059e-9■■■■□ 20.2
DDX55Q8NHQ9 ZNHIT1-203ENST00000485387 2898 ntTSL 1 (best)14.94□□□□□ -0.029e-9■■■■□ 20.2
DDX55Q8NHQ9 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.94■□□□□ 0.789e-8■■■■□ 20.2
DDX55Q8NHQ9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.739e-8■■■■□ 20.2
DDX55Q8NHQ9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC24.96■■□□□ 1.598e-11■■■■□ 20.2
DDX55Q8NHQ9 NEU1-208ENST00000491768 1875 ntTSL 521.85■■□□□ 1.098e-10■■■■□ 20.2
DDX55Q8NHQ9 NEU1-207ENST00000480384 2214 ntTSL 219.31■□□□□ 0.688e-10■■■■□ 20.2
DDX55Q8NHQ9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.688e-10■■■■□ 20.2
DDX55Q8NHQ9 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.326e-8■■■■□ 20.2
DDX55Q8NHQ9 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.056e-8■■■■□ 20.2
DDX55Q8NHQ9 NEU1-209ENST00000495807 4616 ntTSL 213.83□□□□□ -0.28e-10■■■■□ 20.2
DDX55Q8NHQ9 ISCU-209ENST00000540154 385 ntTSL 37.57□□□□□ -1.28e-11■■■■□ 20.2
DDX55Q8NHQ9 ISCU-206ENST00000538193 423 ntTSL 27.01□□□□□ -1.298e-11■■■■□ 20.2
DDX55Q8NHQ9 SENP3-209ENST00000610454 606 ntTSL 316.32■□□□□ 0.26e-19■■■■□ 20.2
DDX55Q8NHQ9 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.056e-19■■■■□ 20.2
DDX55Q8NHQ9 SENP3-203ENST00000580231 901 ntTSL 39.96□□□□□ -0.826e-19■■■■□ 20.2
DDX55Q8NHQ9 SENP3-205ENST00000581010 527 nt8.54□□□□□ -1.046e-19■■■■□ 20.2
DDX55Q8NHQ9 SENP3-206ENST00000581093 493 ntTSL 57.49□□□□□ -1.216e-19■■■■□ 20.2
DDX55Q8NHQ9 SENP3-207ENST00000582789 536 ntTSL 26.34□□□□□ -1.396e-19■■■■□ 20.2
DDX55Q8NHQ9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.046e-7■■■■□ 20.2
DDX55Q8NHQ9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.654e-8■■■■□ 20.2
DDX55Q8NHQ9 SH3GLB2-211ENST00000479237 2794 ntTSL 1 (best)16.97■□□□□ 0.317e-8■■■■□ 20.2
DDX55Q8NHQ9 SH3GLB2-209ENST00000461811 4828 ntTSL 1 (best)15.04■□□□□ -07e-8■■■■□ 20.2
DDX55Q8NHQ9 PPP1R37-204ENST00000540059 1719 ntTSL 225.39■■□□□ 1.653e-8■■■■□ 20.1
DDX55Q8NHQ9 PPP1R37-202ENST00000422370 5943 ntTSL 1 (best)19.43■□□□□ 0.73e-8■■■■□ 20.1
DDX55Q8NHQ9 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.243e-8■■■■□ 20.1
DDX55Q8NHQ9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC24.25■■□□□ 1.475e-8■■■■□ 20.1
DDX55Q8NHQ9 HAGHL-208ENST00000562141 650 ntTSL 521.3■■□□□ 15e-8■■■■□ 20.1
DDX55Q8NHQ9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.463e-7■■■■□ 20.1
DDX55Q8NHQ9 NPC2-208ENST00000556009 699 ntTSL 522.15■■□□□ 1.143e-7■■■■□ 20.1
DDX55Q8NHQ9 NPC2-205ENST00000554482 583 ntTSL 213.99□□□□□ -0.173e-7■■■■□ 20.1
DDX55Q8NHQ9 NPC2-202ENST00000434013 875 ntTSL 2 BASIC13.15□□□□□ -0.33e-7■■■■□ 20.1
DDX55Q8NHQ9 NPC2-201ENST00000238633 796 ntAPPRIS ALT1 TSL 3 BASIC12.01□□□□□ -0.493e-7■■■■□ 20.1
DDX55Q8NHQ9 NPC2-209ENST00000557510 1029 ntTSL 1 (best) BASIC11.32□□□□□ -0.63e-7■■■■□ 20.1
DDX55Q8NHQ9 NPC2-204ENST00000553490 729 ntTSL 210.84□□□□□ -0.673e-7■■■■□ 20.1
DDX55Q8NHQ9 NPC2-203ENST00000541064 1436 ntTSL 2 BASIC10.27□□□□□ -0.773e-7■■■■□ 20.1
DDX55Q8NHQ9 MIR4709-201ENST00000577272 72 ntBASIC2.13□□□□□ -2.073e-7■■■■□ 20.1
DDX55Q8NHQ9 ZNF692-212ENST00000478107 1051 ntTSL 525.36■■□□□ 1.653e-7■■■■□ 20.1
DDX55Q8NHQ9 PHF1-207ENST00000479029 933 ntTSL 220.65■□□□□ 0.92e-14■■■■□ 20.1
DDX55Q8NHQ9 PHF1-204ENST00000427826 862 ntTSL 318.67■□□□□ 0.582e-14■■■■□ 20.1
DDX55Q8NHQ9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.582e-6■■■■□ 20.1
DDX55Q8NHQ9 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.31■■□□□ 14e-8■■■■□ 20.1
DDX55Q8NHQ9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.954e-8■■■■□ 20.1
DDX55Q8NHQ9 LLGL2-219ENST00000582393 599 ntTSL 320.48■□□□□ 0.874e-8■■■■□ 20.1
DDX55Q8NHQ9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.814e-8■■■■□ 20.1
DDX55Q8NHQ9 LLGL2-211ENST00000578638 2367 ntTSL 218.5■□□□□ 0.554e-8■■■■□ 20.1
DDX55Q8NHQ9 LLGL2-206ENST00000577211 543 ntTSL 318.27■□□□□ 0.524e-8■■■■□ 20.1
DDX55Q8NHQ9 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.08■□□□□ 0.484e-8■■■■□ 20.1
DDX55Q8NHQ9 PCED1A-205ENST00000474714 531 ntTSL 317.62■□□□□ 0.414e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.024e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.13■□□□□ 0.014e-8■■■■□ 20.1
DDX55Q8NHQ9 LLGL2-207ENST00000577500 2971 ntTSL 213.8□□□□□ -0.24e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.234e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-203ENST00000361904 1580 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.364e-8■■■■□ 20.1
DDX55Q8NHQ9 LLGL2-204ENST00000545227 3527 ntTSL 212.06□□□□□ -0.484e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-207ENST00000524648 393 ntTSL 211.23□□□□□ -0.614e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-202ENST00000358597 2108 ntAPPRIS ALT1 TSL 1 (best) BASIC9.96□□□□□ -0.824e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-205ENST00000395292 2191 ntAPPRIS P4 TSL 1 (best) BASIC9.84□□□□□ -0.834e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-215ENST00000532048 3044 ntTSL 1 (best) BASIC8.89□□□□□ -0.994e-8■■■■□ 20.1
DDX55Q8NHQ9 CELF1-220ENST00000539455 800 ntTSL 56.72□□□□□ -1.334e-8■■■■□ 20.1
DDX55Q8NHQ9 HS1BP3-206ENST00000446825 841 ntTSL 318.4■□□□□ 0.543e-8■■■■□ 20
DDX55Q8NHQ9 AC012065.3-201ENST00000602736 439 ntBASIC9.15□□□□□ -0.943e-8■■■■□ 20
DDX55Q8NHQ9 EDA-202ENST00000374548 1116 ntTSL 1 (best)31.47■■■□□ 2.637e-13■■■■□ 20
DDX55Q8NHQ9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26.84■■□□□ 1.897e-13■■■■□ 20
DDX55Q8NHQ9 EDA-212ENST00000533317 1462 ntTSL 1 (best)26.82■■□□□ 1.887e-13■■■■□ 20
DDX55Q8NHQ9 EDA-205ENST00000502251 1167 ntTSL 1 (best)25.59■■□□□ 1.697e-13■■■■□ 20
DDX55Q8NHQ9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC25.59■■□□□ 1.697e-13■■■■□ 20
DDX55Q8NHQ9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.317e-13■■■■□ 20
DDX55Q8NHQ9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.727e-13■■■■□ 20
Retrieved 100 of 15,504 protein–RNA pairs in 170.7 ms