RNA–Protein interactions for RNA: ENST00000237289.8

TNFAIP3-201, Transcript of TNF alpha induced protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFAIP3, Length 4,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-201ENST00000237289 NISCHQ9Y2I1 1504 aa24.74■■□□□ 1.55
TNFAIP3-201ENST00000237289 DCAF8L2P0C7V8 631 aa21.61■■□□□ 1.05
TNFAIP3-201ENST00000237289 CCDC180Q9P1Z9 1646 aa21.53■■□□□ 1.04
TNFAIP3-201ENST00000237289 ABCC9O60706 1549 aa21.25■□□□□ 0.99
TNFAIP3-201ENST00000237289 ZCCHC6Q5VYS8 1495 aaKnown RBP20.61■□□□□ 0.89
TNFAIP3-201ENST00000237289 SHROOM4Q9ULL8 1493 aa20.49■□□□□ 0.87
TNFAIP3-201ENST00000237289 RB1CC1Q8TDY2 1594 aa20.4■□□□□ 0.86
TNFAIP3-201ENST00000237289 NACADO15069 1562 aa20.39■□□□□ 0.86
TNFAIP3-201ENST00000237289 DCAF1Q9Y4B6 1507 aa20.28■□□□□ 0.84
TNFAIP3-201ENST00000237289 MYO15BQ96JP2 1530 aa20.18■□□□□ 0.82
TNFAIP3-201ENST00000237289 PABPN1Q86U42 306 aaKnown RBP eCLIP20.17■□□□□ 0.82
TNFAIP3-201ENST00000237289 SCRIBQ14160 1630 aa20.06■□□□□ 0.8
TNFAIP3-201ENST00000237289 SUPT5HO00267 1087 aaKnown RBP19.74■□□□□ 0.75
TNFAIP3-201ENST00000237289 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
TNFAIP3-201ENST00000237289 UNC13AQ9UPW8 1703 aa19.37■□□□□ 0.69
TNFAIP3-201ENST00000237289 CECR2Q9BXF3 1484 aa19.29■□□□□ 0.68
TNFAIP3-201ENST00000237289 BAZ1AQ9NRL2 1556 aaPredicted RBP19.23■□□□□ 0.67
TNFAIP3-201ENST00000237289 RSF1Q96T23 1441 aaPredicted RBP19.12■□□□□ 0.65
TNFAIP3-201ENST00000237289 EIF4G1Q04637 1599 aaKnown RBP19.1■□□□□ 0.65
TNFAIP3-201ENST00000237289 MROH2BQ7Z745 1585 aa19.08■□□□□ 0.64
TNFAIP3-201ENST00000237289 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
TNFAIP3-201ENST00000237289 BAZ1BQ9UIG0 1483 aaKnown RBP19.02■□□□□ 0.64
TNFAIP3-201ENST00000237289 SMARCA2P51531 1590 aa19.01■□□□□ 0.63
TNFAIP3-201ENST00000237289 ATAD2BQ9ULI0 1458 aa18.96■□□□□ 0.63
TNFAIP3-201ENST00000237289 DNAJC5BQ9UF47 199 aa18.94■□□□□ 0.62
TNFAIP3-201ENST00000237289 CC2D2AQ9P2K1 1620 aa18.92■□□□□ 0.62
TNFAIP3-201ENST00000237289 WIZO95785 1651 aa18.84■□□□□ 0.61
TNFAIP3-201ENST00000237289 NCAPD3P42695 1498 aa18.84■□□□□ 0.61
TNFAIP3-201ENST00000237289 TOP2AP11388 1531 aaKnown RBP18.72■□□□□ 0.59
TNFAIP3-201ENST00000237289 HMGXB3Q12766 1538 aa18.67■□□□□ 0.58
TNFAIP3-201ENST00000237289 PEG3Q9GZU2 1588 aa18.62■□□□□ 0.57
TNFAIP3-201ENST00000237289 CCDC88BA6NC98 1476 aa18.61■□□□□ 0.57
TNFAIP3-201ENST00000237289 TRIM41Q8WV44 630 aa18.57■□□□□ 0.56
TNFAIP3-201ENST00000237289 CADPSQ9ULU8 1353 aa18.53■□□□□ 0.56
TNFAIP3-201ENST00000237289 ERCC6Q03468 1493 aa18.5■□□□□ 0.55
TNFAIP3-201ENST00000237289 PDS5BQ9NTI5 1447 aa18.47■□□□□ 0.55
TNFAIP3-201ENST00000237289 NESP48681 1621 aa18.33■□□□□ 0.52
TNFAIP3-201ENST00000237289 FAM9AQ8IZU1 332 aaPredicted RBP18.32■□□□□ 0.52
TNFAIP3-201ENST00000237289 CHIC1Q5VXU3 224 aa18.32■□□□□ 0.52
TNFAIP3-201ENST00000237289 CFTRP13569 1480 aa18.3■□□□□ 0.52
TNFAIP3-201ENST00000237289 FANCD2Q9BXW9 1451 aa18.28■□□□□ 0.52
TNFAIP3-201ENST00000237289 CEP164Q9UPV0 1460 aa18.26■□□□□ 0.51
TNFAIP3-201ENST00000237289 LAMC3Q9Y6N6 1575 aa18.24■□□□□ 0.51
TNFAIP3-201ENST00000237289 WRNQ14191 1432 aaPredicted RBP eCLIP18.22■□□□□ 0.51
TNFAIP3-201ENST00000237289 EHMT2Q96KQ7 1210 aa18.21■□□□□ 0.51
TNFAIP3-201ENST00000237289 ABCC8Q09428 1581 aa18.09■□□□□ 0.49
TNFAIP3-201ENST00000237289 MRC2Q9UBG0 1479 aa18.06■□□□□ 0.48
TNFAIP3-201ENST00000237289 FBLN2P98095 1184 aa18.04■□□□□ 0.48
TNFAIP3-201ENST00000237289 SOGA1O94964 1423 aa18.01■□□□□ 0.47
TNFAIP3-201ENST00000237289 UBTFP17480 764 aaKnown RBP17.99■□□□□ 0.47
TNFAIP3-201ENST00000237289 TOPBP1Q92547 1522 aa17.93■□□□□ 0.46
TNFAIP3-201ENST00000237289 CSRNP3Q8WYN3 585 aa17.92■□□□□ 0.46
TNFAIP3-201ENST00000237289 RANGAP1P46060 587 aaPredicted RBP17.92■□□□□ 0.46
TNFAIP3-201ENST00000237289 FGD5Q6ZNL6 1462 aa17.9■□□□□ 0.46
TNFAIP3-201ENST00000237289 KIF27Q86VH2 1401 aa17.9■□□□□ 0.46
TNFAIP3-201ENST00000237289 TDRD9Q8NDG6 1382 aaKnown RBP17.9■□□□□ 0.46
TNFAIP3-201ENST00000237289 CUX2O14529 1486 aa17.89■□□□□ 0.45
TNFAIP3-201ENST00000237289 DNMBPQ6XZF7 1577 aa17.88■□□□□ 0.45
TNFAIP3-201ENST00000237289 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
TNFAIP3-201ENST00000237289 URB2Q14146 1524 aaKnown RBP17.87■□□□□ 0.45
TNFAIP3-201ENST00000237289 KIF21AQ7Z4S6 1674 aa17.86■□□□□ 0.45
TNFAIP3-201ENST00000237289 CUX1P39880 1505 aa17.86■□□□□ 0.45
TNFAIP3-201ENST00000237289 RAD54L2Q9Y4B4 1467 aa17.84■□□□□ 0.45
TNFAIP3-201ENST00000237289 POLA1P09884 1462 aaPredicted RBP17.81■□□□□ 0.44
TNFAIP3-201ENST00000237289 IFT140Q96RY7 1462 aa17.81■□□□□ 0.44
TNFAIP3-201ENST00000237289 SYNJ1O43426 1573 aa17.8■□□□□ 0.44
TNFAIP3-201ENST00000237289 PRDM2Q13029 1718 aa17.79■□□□□ 0.44
TNFAIP3-201ENST00000237289 EEA1Q15075 1411 aa17.78■□□□□ 0.44
TNFAIP3-201ENST00000237289 TOP2BQ02880 1626 aa17.78■□□□□ 0.44
TNFAIP3-201ENST00000237289 AQRO60306 1485 aaKnown RBP eCLIP17.73■□□□□ 0.431e-6■■■■□ 23.4
TNFAIP3-201ENST00000237289 WDR62O43379 1518 aa17.73■□□□□ 0.43
TNFAIP3-201ENST00000237289 LOC105371045A0A1W2PR82 267 aa17.73■□□□□ 0.43
TNFAIP3-201ENST00000237289 GAPVD1Q14C86 1478 aa17.71■□□□□ 0.43
TNFAIP3-201ENST00000237289 TTBK1Q5TCY1 1321 aaPredicted RBP17.7■□□□□ 0.42
TNFAIP3-201ENST00000237289 CARMIL1Q5VZK9 1371 aa17.69■□□□□ 0.42
TNFAIP3-201ENST00000237289 ATP1B4Q9UN42 357 aaPredicted RBP17.64■□□□□ 0.41
TNFAIP3-201ENST00000237289 BIVM-ERCC5R4GMW8 1640 aa17.64■□□□□ 0.41
TNFAIP3-201ENST00000237289 ABCA10Q8WWZ4 1543 aa17.63■□□□□ 0.41
TNFAIP3-201ENST00000237289 GRIN2BQ13224 1484 aa17.63■□□□□ 0.41
TNFAIP3-201ENST00000237289 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
TNFAIP3-201ENST00000237289 APLP2Q06481 763 aa17.62■□□□□ 0.41
TNFAIP3-201ENST00000237289 ZNF608Q9ULD9 1512 aaPredicted RBP17.6■□□□□ 0.41
TNFAIP3-201ENST00000237289 IGF1RP08069 1367 aa17.59■□□□□ 0.41
TNFAIP3-201ENST00000237289 RUSC2Q8N2Y8 1516 aa17.59■□□□□ 0.41
TNFAIP3-201ENST00000237289 OSCARQ8IYS5 282 aa17.56■□□□□ 0.4
TNFAIP3-201ENST00000237289 GOLGA3Q08378 1498 aa17.52■□□□□ 0.4
TNFAIP3-201ENST00000237289 P3H3Q8IVL6 736 aa17.52■□□□□ 0.4
TNFAIP3-201ENST00000237289 FHAD1B1AJZ9 1412 aa17.51■□□□□ 0.39
TNFAIP3-201ENST00000237289 RAPGEF2Q9Y4G8 1499 aa17.51■□□□□ 0.39
TNFAIP3-201ENST00000237289 SNAPC4Q5SXM2 1469 aa17.51■□□□□ 0.39
TNFAIP3-201ENST00000237289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.48■□□□□ 0.39
TNFAIP3-201ENST00000237289 HNRNPUL2Q1KMD3 747 aaKnown RBP17.48■□□□□ 0.39
TNFAIP3-201ENST00000237289 MAGI1Q96QZ7 1491 aaPredicted RBP17.44■□□□□ 0.38
TNFAIP3-201ENST00000237289 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
TNFAIP3-201ENST00000237289 TARBP1Q13395 1621 aaKnown RBP17.42■□□□□ 0.38
TNFAIP3-201ENST00000237289 EIF4G3O43432 1585 aaKnown RBP17.41■□□□□ 0.38
TNFAIP3-201ENST00000237289 SYNJ2O15056 1496 aa17.4■□□□□ 0.38
TNFAIP3-201ENST00000237289 JPH4Q96JJ6 628 aa17.39■□□□□ 0.37
TNFAIP3-201ENST00000237289 TNIKQ9UKE5 1360 aa17.36■□□□□ 0.37
TNFAIP3-201ENST00000237289 WDR97A6NE52 1622 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms