RNA–Protein interactions for RNA: ENST00000368309.3

UBQLN4-201, Transcript of ubiquilin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBQLN4, Length 3,576 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4-201ENST00000368309 NISCHQ9Y2I1 1504 aa37.72■■■■□ 3.63
UBQLN4-201ENST00000368309 SHROOM4Q9ULL8 1493 aa32.31■■■□□ 2.76
UBQLN4-201ENST00000368309 CCDC180Q9P1Z9 1646 aa31.96■■■□□ 2.71
UBQLN4-201ENST00000368309 ZCCHC6Q5VYS8 1495 aaKnown RBP31.85■■■□□ 2.69
UBQLN4-201ENST00000368309 SUPT5HO00267 1087 aaKnown RBP31.67■■■□□ 2.66
UBQLN4-201ENST00000368309 DCAF8L2P0C7V8 631 aa31.65■■■□□ 2.66
UBQLN4-201ENST00000368309 DCAF1Q9Y4B6 1507 aa30.84■■■□□ 2.53
UBQLN4-201ENST00000368309 CHIC1Q5VXU3 224 aa30.64■■■□□ 2.49
UBQLN4-201ENST00000368309 MYO15BQ96JP2 1530 aa30.41■■■□□ 2.46
UBQLN4-201ENST00000368309 SCRIBQ14160 1630 aa30.12■■■□□ 2.41
UBQLN4-201ENST00000368309 ABCC9O60706 1549 aa29.98■■■□□ 2.39
UBQLN4-201ENST00000368309 RSF1Q96T23 1441 aaPredicted RBP29.87■■■□□ 2.37
UBQLN4-201ENST00000368309 LOC105371045A0A1W2PR82 267 aa29.82■■■□□ 2.36
UBQLN4-201ENST00000368309 NACADO15069 1562 aa29.67■■■□□ 2.34
UBQLN4-201ENST00000368309 PCGF6Q9BYE7 350 aa29.64■■■□□ 2.34
UBQLN4-201ENST00000368309 CECR2Q9BXF3 1484 aa29.53■■■□□ 2.32
UBQLN4-201ENST00000368309 RB1CC1Q8TDY2 1594 aa29.48■■■□□ 2.31
UBQLN4-201ENST00000368309 HRCP23327 699 aa29.45■■■□□ 2.3
UBQLN4-201ENST00000368309 TRIM41Q8WV44 630 aa29.45■■■□□ 2.3
UBQLN4-201ENST00000368309 MROH2BQ7Z745 1585 aa29.36■■■□□ 2.29
UBQLN4-201ENST00000368309 FAM9AQ8IZU1 332 aaPredicted RBP29.29■■■□□ 2.28
UBQLN4-201ENST00000368309 WIZO95785 1651 aa29.17■■■□□ 2.26
UBQLN4-201ENST00000368309 EHMT2Q96KQ7 1210 aa29.12■■■□□ 2.25
UBQLN4-201ENST00000368309 TRIM26Q12899 539 aaPredicted RBP29.01■■■□□ 2.24
UBQLN4-201ENST00000368309 PPARGC1BQ86YN6 1023 aaKnown RBP28.97■■■□□ 2.23
UBQLN4-201ENST00000368309 BAZ1AQ9NRL2 1556 aaPredicted RBP28.95■■■□□ 2.22
UBQLN4-201ENST00000368309 PABPN1Q86U42 306 aaKnown RBP eCLIP28.78■■■□□ 2.2
UBQLN4-201ENST00000368309 UNC13AQ9UPW8 1703 aa28.72■■■□□ 2.19
UBQLN4-201ENST00000368309 SMARCA4P51532 1647 aa28.71■■■□□ 2.19
UBQLN4-201ENST00000368309 TOP2AP11388 1531 aaKnown RBP28.66■■■□□ 2.18
UBQLN4-201ENST00000368309 CCDC88BA6NC98 1476 aa28.64■■■□□ 2.18
UBQLN4-201ENST00000368309 EIF4G1Q04637 1599 aaKnown RBP28.6■■■□□ 2.17
UBQLN4-201ENST00000368309 ABCC8Q09428 1581 aa28.53■■■□□ 2.16
UBQLN4-201ENST00000368309 SMARCA2P51531 1590 aa28.52■■■□□ 2.16
UBQLN4-201ENST00000368309 BICRAQ9NZM4 1560 aa28.46■■■□□ 2.15
UBQLN4-201ENST00000368309 SOGA1O94964 1423 aa28.29■■■□□ 2.12
UBQLN4-201ENST00000368309 ZEB1P37275 1124 aaPredicted RBP28.26■■■□□ 2.11
UBQLN4-201ENST00000368309 RUSC2Q8N2Y8 1516 aa28.16■■■□□ 2.1
UBQLN4-201ENST00000368309 CSRNP3Q8WYN3 585 aa28.16■■■□□ 2.1
UBQLN4-201ENST00000368309 TTBK1Q5TCY1 1321 aaPredicted RBP28.12■■■□□ 2.09
UBQLN4-201ENST00000368309 UBTFP17480 764 aaKnown RBP28.11■■■□□ 2.09
UBQLN4-201ENST00000368309 PEG3Q9GZU2 1588 aa28.11■■■□□ 2.09
UBQLN4-201ENST00000368309 ATAD2BQ9ULI0 1458 aa28.08■■■□□ 2.09
UBQLN4-201ENST00000368309 WRNQ14191 1432 aaPredicted RBP eCLIP28.07■■■□□ 2.08
UBQLN4-201ENST00000368309 CEP162Q5TB80 1403 aa28.06■■■□□ 2.08
UBQLN4-201ENST00000368309 TNIKQ9UKE5 1360 aa28.01■■■□□ 2.07
UBQLN4-201ENST00000368309 BAZ1BQ9UIG0 1483 aaKnown RBP28■■■□□ 2.07
UBQLN4-201ENST00000368309 EEA1Q15075 1411 aa27.99■■■□□ 2.07
UBQLN4-201ENST00000368309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.98■■■□□ 2.07
UBQLN4-201ENST00000368309 SYNJ1O43426 1573 aa27.87■■■□□ 2.05
UBQLN4-201ENST00000368309 CCER1Q8TC90 406 aaPredicted RBP27.86■■■□□ 2.05
UBQLN4-201ENST00000368309 GOLGA3Q08378 1498 aa27.84■■■□□ 2.05
UBQLN4-201ENST00000368309 CEP164Q9UPV0 1460 aa27.69■■■□□ 2.02
UBQLN4-201ENST00000368309 RANGAP1P46060 587 aaPredicted RBP27.68■■■□□ 2.02
UBQLN4-201ENST00000368309 CLIP1P30622 1438 aa27.58■■■□□ 2.01
UBQLN4-201ENST00000368309 RAPGEF2Q9Y4G8 1499 aa27.57■■■□□ 2
UBQLN4-201ENST00000368309 KIF21BO75037 1637 aa27.57■■■□□ 2
UBQLN4-201ENST00000368309 NCAPD3P42695 1498 aa27.53■■■□□ 2
UBQLN4-201ENST00000368309 TOP2BQ02880 1626 aa27.5■■□□□ 1.99
UBQLN4-201ENST00000368309 HMGXB3Q12766 1538 aa27.43■■□□□ 1.98
UBQLN4-201ENST00000368309 HNRNPUL2Q1KMD3 747 aaKnown RBP27.43■■□□□ 1.98
UBQLN4-201ENST00000368309 APLP2Q06481 763 aa27.42■■□□□ 1.98
UBQLN4-201ENST00000368309 VPS8Q8N3P4 1428 aa27.4■■□□□ 1.98
UBQLN4-201ENST00000368309 BIVM-ERCC5R4GMW8 1640 aa27.34■■□□□ 1.97
UBQLN4-201ENST00000368309 CUX1P39880 1505 aa27.32■■□□□ 1.96
UBQLN4-201ENST00000368309 CFTRP13569 1480 aa27.29■■□□□ 1.96
UBQLN4-201ENST00000368309 PRXQ9BXM0 1461 aa27.26■■□□□ 1.95
UBQLN4-201ENST00000368309 DIEXFQ68CQ4 756 aaKnown RBP27.22■■□□□ 1.95
UBQLN4-201ENST00000368309 KIF27Q86VH2 1401 aa27.21■■□□□ 1.95
UBQLN4-201ENST00000368309 ERICH3Q5RHP9 1530 aa27.16■■□□□ 1.94
UBQLN4-201ENST00000368309 ARAP1Q96P48 1450 aa27.09■■□□□ 1.93
UBQLN4-201ENST00000368309 KANK4Q5T7N3 995 aaPredicted RBP27.09■■□□□ 1.93
UBQLN4-201ENST00000368309 SCAF1Q9H7N4 1312 aaKnown RBP27.07■■□□□ 1.92
UBQLN4-201ENST00000368309 CADPSQ9ULU8 1353 aa27.06■■□□□ 1.92
UBQLN4-201ENST00000368309 ZNF316A6NFI3 1004 aaPredicted RBP27.03■■□□□ 1.92
UBQLN4-201ENST00000368309 CUX2O14529 1486 aa27■■□□□ 1.91
UBQLN4-201ENST00000368309 IGF1RP08069 1367 aa26.97■■□□□ 1.91
UBQLN4-201ENST00000368309 ARHGAP35Q9NRY4 1499 aa26.9■■□□□ 1.9
UBQLN4-201ENST00000368309 CC2D2AQ9P2K1 1620 aa26.89■■□□□ 1.9
UBQLN4-201ENST00000368309 NEUROD1Q13562 356 aa26.88■■□□□ 1.89
UBQLN4-201ENST00000368309 FGD5Q6ZNL6 1462 aa26.88■■□□□ 1.89
UBQLN4-201ENST00000368309 ACIN1Q9UKV3 1341 aaKnown RBP26.86■■□□□ 1.89
UBQLN4-201ENST00000368309 CARMIL1Q5VZK9 1371 aa26.86■■□□□ 1.89
UBQLN4-201ENST00000368309 PRDM2Q13029 1718 aa26.83■■□□□ 1.89
UBQLN4-201ENST00000368309 ITGAEP38570 1179 aa26.79■■□□□ 1.88
UBQLN4-201ENST00000368309 FANCD2Q9BXW9 1451 aa26.78■■□□□ 1.88
UBQLN4-201ENST00000368309 P3H3Q8IVL6 736 aa26.74■■□□□ 1.87
UBQLN4-201ENST00000368309 DHX57Q6P158 1386 aaKnown RBP26.73■■□□□ 1.87
UBQLN4-201ENST00000368309 RRBP1Q9P2E9 1410 aaKnown RBP26.72■■□□□ 1.87
UBQLN4-201ENST00000368309 CENPBP07199 599 aaPredicted RBP26.72■■□□□ 1.87
UBQLN4-201ENST00000368309 CCNB3Q8WWL7 1395 aa26.69■■□□□ 1.86
UBQLN4-201ENST00000368309 RAD54L2Q9Y4B4 1467 aa26.69■■□□□ 1.86
UBQLN4-201ENST00000368309 NESP48681 1621 aa26.68■■□□□ 1.86
UBQLN4-201ENST00000368309 MIER1Q8N108 512 aa26.67■■□□□ 1.86
UBQLN4-201ENST00000368309 ATP1B4Q9UN42 357 aaPredicted RBP26.66■■□□□ 1.86
UBQLN4-201ENST00000368309 YTHDC1Q96MU7 727 aaKnown RBP26.64■■□□□ 1.86
UBQLN4-201ENST00000368309 CLSPNQ9HAW4 1339 aa26.62■■□□□ 1.85
UBQLN4-201ENST00000368309 GTF3C3Q9Y5Q9 886 aa26.59■■□□□ 1.85
UBQLN4-201ENST00000368309 POLA1P09884 1462 aaPredicted RBP26.57■■□□□ 1.84
UBQLN4-201ENST00000368309 TOPBP1Q92547 1522 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms