RNA–Protein interactions for RNA: ENST00000427826.1

PHF1-204, Transcript of PHD finger protein 1, humanhuman

TSL 3

Gene PHF1, Length 862 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-204ENST00000427826 NISCHQ9Y2I1 1504 aa37.29■■■■□ 3.56
PHF1-204ENST00000427826 CCDC180Q9P1Z9 1646 aa33.27■■■□□ 2.92
PHF1-204ENST00000427826 ABCC9O60706 1549 aa32.94■■■□□ 2.86
PHF1-204ENST00000427826 RB1CC1Q8TDY2 1594 aa31.55■■■□□ 2.64
PHF1-204ENST00000427826 NACADO15069 1562 aa31.43■■■□□ 2.62
PHF1-204ENST00000427826 DCAF8L2P0C7V8 631 aa31.39■■■□□ 2.62
PHF1-204ENST00000427826 MYO15BQ96JP2 1530 aa31.14■■■□□ 2.58
PHF1-204ENST00000427826 ZCCHC6Q5VYS8 1495 aaKnown RBP30.95■■■□□ 2.55
PHF1-204ENST00000427826 DCAF1Q9Y4B6 1507 aa30.86■■■□□ 2.53
PHF1-204ENST00000427826 PABPN1Q86U42 306 aaKnown RBP eCLIP30.76■■■□□ 2.511e-8■■■□□ 15.7
PHF1-204ENST00000427826 UNC13AQ9UPW8 1703 aa30.67■■■□□ 2.5
PHF1-204ENST00000427826 DNAJC5BQ9UF47 199 aa30.59■■■□□ 2.49
PHF1-204ENST00000427826 BICRAQ9NZM4 1560 aa30.54■■■□□ 2.48
PHF1-204ENST00000427826 SCRIBQ14160 1630 aa30.31■■■□□ 2.44
PHF1-204ENST00000427826 SHROOM4Q9ULL8 1493 aa30.3■■■□□ 2.44
PHF1-204ENST00000427826 EIF4G1Q04637 1599 aaKnown RBP29.8■■■□□ 2.36
PHF1-204ENST00000427826 CC2D2AQ9P2K1 1620 aa29.75■■■□□ 2.35
PHF1-204ENST00000427826 CECR2Q9BXF3 1484 aa29.68■■■□□ 2.34
PHF1-204ENST00000427826 NCAPD3P42695 1498 aa29.03■■■□□ 2.24
PHF1-204ENST00000427826 SMARCA4P51532 1647 aa28.97■■■□□ 2.23
PHF1-204ENST00000427826 ATAD2BQ9ULI0 1458 aa28.96■■■□□ 2.23
PHF1-204ENST00000427826 BAZ1AQ9NRL2 1556 aaPredicted RBP28.94■■■□□ 2.22
PHF1-204ENST00000427826 SMARCA2P51531 1590 aa28.92■■■□□ 2.22
PHF1-204ENST00000427826 HMGXB3Q12766 1538 aa28.81■■■□□ 2.2
PHF1-204ENST00000427826 PEG3Q9GZU2 1588 aa28.72■■■□□ 2.19
PHF1-204ENST00000427826 BAZ1BQ9UIG0 1483 aaKnown RBP28.71■■■□□ 2.19
PHF1-204ENST00000427826 MROH2BQ7Z745 1585 aa28.7■■■□□ 2.18
PHF1-204ENST00000427826 ERCC6Q03468 1493 aa28.47■■■□□ 2.15
PHF1-204ENST00000427826 NESP48681 1621 aa28.37■■■□□ 2.13
PHF1-204ENST00000427826 WIZO95785 1651 aa28.33■■■□□ 2.13
PHF1-204ENST00000427826 CUX2O14529 1486 aa28.3■■■□□ 2.12
PHF1-204ENST00000427826 LAMC3Q9Y6N6 1575 aa28.28■■■□□ 2.12
PHF1-204ENST00000427826 RSF1Q96T23 1441 aaPredicted RBP28.28■■■□□ 2.12
PHF1-204ENST00000427826 PDS5BQ9NTI5 1447 aa28.18■■■□□ 2.1
PHF1-204ENST00000427826 CADPSQ9ULU8 1353 aa28.18■■■□□ 2.1
PHF1-204ENST00000427826 TOP2AP11388 1531 aaKnown RBP28.06■■■□□ 2.08
PHF1-204ENST00000427826 THOC2Q8NI27 1593 aaKnown RBP27.99■■■□□ 2.07
PHF1-204ENST00000427826 KIF21AQ7Z4S6 1674 aa27.97■■■□□ 2.07
PHF1-204ENST00000427826 DNAJC5Q9H3Z4 198 aa27.92■■■□□ 2.06
PHF1-204ENST00000427826 CFTRP13569 1480 aa27.9■■■□□ 2.06
PHF1-204ENST00000427826 MRC2Q9UBG0 1479 aa27.85■■■□□ 2.05
PHF1-204ENST00000427826 FANCD2Q9BXW9 1451 aa27.82■■■□□ 2.04
PHF1-204ENST00000427826 CEP164Q9UPV0 1460 aa27.82■■■□□ 2.04
PHF1-204ENST00000427826 CCDC88BA6NC98 1476 aa27.76■■■□□ 2.03
PHF1-204ENST00000427826 WDR62O43379 1518 aa27.74■■■□□ 2.03
PHF1-204ENST00000427826 PRDM2Q13029 1718 aa27.53■■■□□ 2
PHF1-204ENST00000427826 URB2Q14146 1524 aaKnown RBP27.53■■■□□ 2
PHF1-204ENST00000427826 ABCC8Q09428 1581 aa27.36■■□□□ 1.97
PHF1-204ENST00000427826 SUPT5HO00267 1087 aaKnown RBP27.32■■□□□ 1.96
PHF1-204ENST00000427826 TOPBP1Q92547 1522 aa27.31■■□□□ 1.96
PHF1-204ENST00000427826 IFT140Q96RY7 1462 aa27.27■■□□□ 1.96
PHF1-204ENST00000427826 DNMBPQ6XZF7 1577 aa27.24■■□□□ 1.95
PHF1-204ENST00000427826 OSCARQ8IYS5 282 aa27.14■■□□□ 1.94
PHF1-204ENST00000427826 ZNF608Q9ULD9 1512 aaPredicted RBP27.12■■□□□ 1.93
PHF1-204ENST00000427826 POLA1P09884 1462 aaPredicted RBP27.06■■□□□ 1.92
PHF1-204ENST00000427826 TARBP1Q13395 1621 aaKnown RBP27.01■■□□□ 1.91
PHF1-204ENST00000427826 SOGA1O94964 1423 aa26.99■■□□□ 1.91
PHF1-204ENST00000427826 EIF4G3O43432 1585 aaKnown RBP26.97■■□□□ 1.91
PHF1-204ENST00000427826 AQRO60306 1485 aaKnown RBP eCLIP26.95■■□□□ 1.913e-7■■□□□ 13.1
PHF1-204ENST00000427826 CUX1P39880 1505 aa26.95■■□□□ 1.9
PHF1-204ENST00000427826 FGD5Q6ZNL6 1462 aa26.93■■□□□ 1.9
PHF1-204ENST00000427826 RAD54L2Q9Y4B4 1467 aa26.93■■□□□ 1.9
PHF1-204ENST00000427826 TDRD9Q8NDG6 1382 aaKnown RBP26.87■■□□□ 1.89
PHF1-204ENST00000427826 WDR97A6NE52 1622 aa26.83■■□□□ 1.88
PHF1-204ENST00000427826 TRIM41Q8WV44 630 aa26.81■■□□□ 1.88
PHF1-204ENST00000427826 FBLN2P98095 1184 aa26.77■■□□□ 1.88
PHF1-204ENST00000427826 GRIN2BQ13224 1484 aa26.71■■□□□ 1.87
PHF1-204ENST00000427826 WRNQ14191 1432 aaPredicted RBP eCLIP26.69■■□□□ 1.86
PHF1-204ENST00000427826 SNAPC4Q5SXM2 1469 aa26.68■■□□□ 1.86
PHF1-204ENST00000427826 ABCA10Q8WWZ4 1543 aa26.67■■□□□ 1.86
PHF1-204ENST00000427826 MAGI1Q96QZ7 1491 aaPredicted RBP26.67■■□□□ 1.86
PHF1-204ENST00000427826 CHD1O14646 1710 aa26.66■■□□□ 1.86
PHF1-204ENST00000427826 CHMP7Q8WUX9 453 aaPredicted RBP26.66■■□□□ 1.86
PHF1-204ENST00000427826 GAPVD1Q14C86 1478 aa26.65■■□□□ 1.86
PHF1-204ENST00000427826 TOP2BQ02880 1626 aa26.62■■□□□ 1.85
PHF1-204ENST00000427826 RIMBP3CA6NJZ7 1639 aa26.6■■□□□ 1.85
PHF1-204ENST00000427826 RIMBP3BA6NNM3 1639 aa26.6■■□□□ 1.85
PHF1-204ENST00000427826 RIMBP3Q9UFD9 1639 aa26.6■■□□□ 1.85
PHF1-204ENST00000427826 BIVM-ERCC5R4GMW8 1640 aa26.59■■□□□ 1.85
PHF1-204ENST00000427826 ARHGEF11O15085 1522 aa26.59■■□□□ 1.85
PHF1-204ENST00000427826 SYNJ2O15056 1496 aa26.57■■□□□ 1.84
PHF1-204ENST00000427826 SYNJ1O43426 1573 aa26.56■■□□□ 1.84
PHF1-204ENST00000427826 ABCA5Q8WWZ7 1642 aa26.54■■□□□ 1.84
PHF1-204ENST00000427826 PBRM1Q86U86 1689 aa26.51■■□□□ 1.83
PHF1-204ENST00000427826 CYB5RLQ6IPT4 315 aa26.44■■□□□ 1.82
PHF1-204ENST00000427826 CLASP1Q7Z460 1538 aa26.43■■□□□ 1.82
PHF1-204ENST00000427826 ERICH3Q5RHP9 1530 aa26.35■■□□□ 1.81
PHF1-204ENST00000427826 FHAD1B1AJZ9 1412 aa26.35■■□□□ 1.81
PHF1-204ENST00000427826 GRIN2AQ12879 1464 aa26.34■■□□□ 1.81
PHF1-204ENST00000427826 ARAP1Q96P48 1450 aa26.34■■□□□ 1.81
PHF1-204ENST00000427826 ADAMTS12P58397 1594 aa26.32■■□□□ 1.8
PHF1-204ENST00000427826 NUP160Q12769 1436 aa26.24■■□□□ 1.79
PHF1-204ENST00000427826 KIF27Q86VH2 1401 aa26.19■■□□□ 1.78
PHF1-204ENST00000427826 CEP170Q5SW79 1584 aa26.17■■□□□ 1.78
PHF1-204ENST00000427826 IGF1RP08069 1367 aa26.13■■□□□ 1.77
PHF1-204ENST00000427826 TRHP20396 242 aaPredicted RBP26.05■■□□□ 1.76
PHF1-204ENST00000427826 JPH4Q96JJ6 628 aa26.04■■□□□ 1.76
PHF1-204ENST00000427826 SHROOM2Q13796 1616 aa26.03■■□□□ 1.76
PHF1-204ENST00000427826 CUL7Q14999 1698 aa26.01■■□□□ 1.75
PHF1-204ENST00000427826 ERCC6L2Q5T890 1561 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms