Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 BAK1P1-201ENST00000317045 636 ntBASIC18.34■□□□□ 0.53
SCN11AQ9UI33 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 BCAS2P2-201ENST00000425064 674 ntBASIC18.34■□□□□ 0.53
SCN11AQ9UI33 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 AC011247.3-201ENST00000603297 438 ntBASIC18.34■□□□□ 0.53
SCN11AQ9UI33 AC244250.3-201ENST00000620749 366 ntBASIC18.34■□□□□ 0.53
SCN11AQ9UI33 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 AC015909.5-201ENST00000624336 2266 ntBASIC18.34■□□□□ 0.53
SCN11AQ9UI33 FUCA1P1-201ENST00000374476 1351 ntBASIC18.34■□□□□ 0.53
SCN11AQ9UI33 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SCN11AQ9UI33 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 KRT18P46-201ENST00000435568 1279 ntBASIC18.33■□□□□ 0.53
SCN11AQ9UI33 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 AC012073.1-201ENST00000606114 1108 ntBASIC18.33■□□□□ 0.53
SCN11AQ9UI33 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SCN11AQ9UI33 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.33■□□□□ 0.52
SCN11AQ9UI33 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 HMGA1P1-201ENST00000415560 1062 ntBASIC18.32■□□□□ 0.52
SCN11AQ9UI33 AC092573.1-201ENST00000433054 884 ntBASIC18.32■□□□□ 0.52
SCN11AQ9UI33 RPL35P9-201ENST00000446059 350 ntBASIC18.32■□□□□ 0.52
SCN11AQ9UI33 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 NHP2-202ENST00000314397 599 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 MIR1227-201ENST00000408484 88 ntBASIC18.32■□□□□ 0.52
SCN11AQ9UI33 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN11AQ9UI33 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms