RNA–Protein interactions for RNA: ENST00000389797.7

LRCH1-202, Transcript of leucine rich repeats and calponin homology domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LRCH1, Length 3,314 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH1-202ENST00000389797 NISCHQ9Y2I1 1504 aa32.31■■■□□ 2.76
LRCH1-202ENST00000389797 CCDC180Q9P1Z9 1646 aa27.94■■■□□ 2.06
LRCH1-202ENST00000389797 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
LRCH1-202ENST00000389797 SHROOM4Q9ULL8 1493 aa26.71■■□□□ 1.87
LRCH1-202ENST00000389797 DCAF1Q9Y4B6 1507 aa26.66■■□□□ 1.86
LRCH1-202ENST00000389797 DCAF8L2P0C7V8 631 aa26.5■■□□□ 1.83
LRCH1-202ENST00000389797 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
LRCH1-202ENST00000389797 MYO15BQ96JP2 1530 aa26.17■■□□□ 1.78
LRCH1-202ENST00000389797 ABCC9O60706 1549 aa26.12■■□□□ 1.77
LRCH1-202ENST00000389797 NACADO15069 1562 aa25.9■■□□□ 1.74
LRCH1-202ENST00000389797 SCRIBQ14160 1630 aa25.84■■□□□ 1.73
LRCH1-202ENST00000389797 CHIC1Q5VXU3 224 aa25.71■■□□□ 1.71
LRCH1-202ENST00000389797 HRCP23327 699 aa25.58■■□□□ 1.69
LRCH1-202ENST00000389797 RB1CC1Q8TDY2 1594 aa25.58■■□□□ 1.68
LRCH1-202ENST00000389797 PCGF6Q9BYE7 350 aa25.32■■□□□ 1.64
LRCH1-202ENST00000389797 UNC13AQ9UPW8 1703 aa25.27■■□□□ 1.64
LRCH1-202ENST00000389797 RSF1Q96T23 1441 aaPredicted RBP25.25■■□□□ 1.63
LRCH1-202ENST00000389797 CECR2Q9BXF3 1484 aa25.16■■□□□ 1.62
LRCH1-202ENST00000389797 MROH2BQ7Z745 1585 aa25.04■■□□□ 1.6
LRCH1-202ENST00000389797 LOC105371045A0A1W2PR82 267 aa24.96■■□□□ 1.59
LRCH1-202ENST00000389797 BICRAQ9NZM4 1560 aa24.95■■□□□ 1.59
LRCH1-202ENST00000389797 PPARGC1BQ86YN6 1023 aaKnown RBP24.92■■□□□ 1.58
LRCH1-202ENST00000389797 WIZO95785 1651 aa24.88■■□□□ 1.57
LRCH1-202ENST00000389797 BAZ1AQ9NRL2 1556 aaPredicted RBP24.87■■□□□ 1.57
LRCH1-202ENST00000389797 TRIM26Q12899 539 aaPredicted RBP24.78■■□□□ 1.56
LRCH1-202ENST00000389797 SMARCA4P51532 1647 aa24.77■■□□□ 1.56
LRCH1-202ENST00000389797 PABPN1Q86U42 306 aaKnown RBP eCLIP24.73■■□□□ 1.55
LRCH1-202ENST00000389797 TOP2AP11388 1531 aaKnown RBP24.54■■□□□ 1.52
LRCH1-202ENST00000389797 TRIM41Q8WV44 630 aa24.47■■□□□ 1.51
LRCH1-202ENST00000389797 ZEB1P37275 1124 aaPredicted RBP24.45■■□□□ 1.51
LRCH1-202ENST00000389797 PEG3Q9GZU2 1588 aa24.44■■□□□ 1.5
LRCH1-202ENST00000389797 EIF4G1Q04637 1599 aaKnown RBP24.41■■□□□ 1.5
LRCH1-202ENST00000389797 PELP1Q8IZL8 1130 aaKnown RBP24.38■■□□□ 1.49
LRCH1-202ENST00000389797 SMARCA2P51531 1590 aa24.38■■□□□ 1.49
LRCH1-202ENST00000389797 CCDC88BA6NC98 1476 aa24.34■■□□□ 1.49
LRCH1-202ENST00000389797 FAM9AQ8IZU1 332 aaPredicted RBP24.27■■□□□ 1.48
LRCH1-202ENST00000389797 ATAD2BQ9ULI0 1458 aa24.24■■□□□ 1.47
LRCH1-202ENST00000389797 BAZ1BQ9UIG0 1483 aaKnown RBP24.09■■□□□ 1.45
LRCH1-202ENST00000389797 EHMT2Q96KQ7 1210 aa24.03■■□□□ 1.44
LRCH1-202ENST00000389797 MYT1Q01538 1121 aa24.02■■□□□ 1.44
LRCH1-202ENST00000389797 ABCC8Q09428 1581 aa24.01■■□□□ 1.43
LRCH1-202ENST00000389797 HMGXB3Q12766 1538 aa23.93■■□□□ 1.42
LRCH1-202ENST00000389797 NCAPD3P42695 1498 aa23.93■■□□□ 1.42
LRCH1-202ENST00000389797 SCAF1Q9H7N4 1312 aaKnown RBP23.76■■□□□ 1.39
LRCH1-202ENST00000389797 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
LRCH1-202ENST00000389797 CCER1Q8TC90 406 aaPredicted RBP23.69■■□□□ 1.38
LRCH1-202ENST00000389797 SYNJ1O43426 1573 aa23.69■■□□□ 1.38
LRCH1-202ENST00000389797 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.67■■□□□ 1.38
LRCH1-202ENST00000389797 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
LRCH1-202ENST00000389797 SOGA1O94964 1423 aa23.63■■□□□ 1.37
LRCH1-202ENST00000389797 RUSC2Q8N2Y8 1516 aa23.56■■□□□ 1.36
LRCH1-202ENST00000389797 CFTRP13569 1480 aa23.54■■□□□ 1.36
LRCH1-202ENST00000389797 TOP2BQ02880 1626 aa23.49■■□□□ 1.35
LRCH1-202ENST00000389797 EEA1Q15075 1411 aa23.48■■□□□ 1.35
LRCH1-202ENST00000389797 BIVM-ERCC5R4GMW8 1640 aa23.47■■□□□ 1.35
LRCH1-202ENST00000389797 ACIN1Q9UKV3 1341 aaKnown RBP23.47■■□□□ 1.35
LRCH1-202ENST00000389797 PRDM2Q13029 1718 aa23.46■■□□□ 1.35
LRCH1-202ENST00000389797 CEP162Q5TB80 1403 aa23.43■■□□□ 1.34
LRCH1-202ENST00000389797 DIEXFQ68CQ4 756 aaKnown RBP23.42■■□□□ 1.34
LRCH1-202ENST00000389797 TNIKQ9UKE5 1360 aa23.39■■□□□ 1.33
LRCH1-202ENST00000389797 CUX1P39880 1505 aa23.38■■□□□ 1.33
LRCH1-202ENST00000389797 CSRNP3Q8WYN3 585 aa23.38■■□□□ 1.33
LRCH1-202ENST00000389797 NEUROD1Q13562 356 aa23.37■■□□□ 1.33
LRCH1-202ENST00000389797 TTBK1Q5TCY1 1321 aaPredicted RBP23.36■■□□□ 1.33
LRCH1-202ENST00000389797 CENPBP07199 599 aaPredicted RBP23.35■■□□□ 1.33
LRCH1-202ENST00000389797 CADPSQ9ULU8 1353 aa23.34■■□□□ 1.33
LRCH1-202ENST00000389797 UBTFP17480 764 aaKnown RBP23.28■■□□□ 1.32
LRCH1-202ENST00000389797 KIF21BO75037 1637 aa23.26■■□□□ 1.31
LRCH1-202ENST00000389797 GOLGA3Q08378 1498 aa23.24■■□□□ 1.31
LRCH1-202ENST00000389797 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
LRCH1-202ENST00000389797 GTF3C3Q9Y5Q9 886 aa23.2■■□□□ 1.3
LRCH1-202ENST00000389797 ZNF316A6NFI3 1004 aaPredicted RBP23.15■■□□□ 1.3
LRCH1-202ENST00000389797 NESP48681 1621 aa23.12■■□□□ 1.29
LRCH1-202ENST00000389797 RAPGEF2Q9Y4G8 1499 aa23.11■■□□□ 1.29
LRCH1-202ENST00000389797 FANCD2Q9BXW9 1451 aa23.11■■□□□ 1.29
LRCH1-202ENST00000389797 DNAJC5BQ9UF47 199 aa23.09■■□□□ 1.29
LRCH1-202ENST00000389797 PRXQ9BXM0 1461 aa23.05■■□□□ 1.28
LRCH1-202ENST00000389797 LAMC3Q9Y6N6 1575 aa23.03■■□□□ 1.28
LRCH1-202ENST00000389797 FGD5Q6ZNL6 1462 aa23.02■■□□□ 1.28
LRCH1-202ENST00000389797 KIF27Q86VH2 1401 aa23.01■■□□□ 1.27
LRCH1-202ENST00000389797 ERICH3Q5RHP9 1530 aa23.01■■□□□ 1.27
LRCH1-202ENST00000389797 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
LRCH1-202ENST00000389797 HNRNPUL2Q1KMD3 747 aaKnown RBP22.96■■□□□ 1.27
LRCH1-202ENST00000389797 CLIP1P30622 1438 aa22.93■■□□□ 1.26
LRCH1-202ENST00000389797 TOPBP1Q92547 1522 aa22.93■■□□□ 1.26
LRCH1-202ENST00000389797 CUX2O14529 1486 aa22.92■■□□□ 1.26
LRCH1-202ENST00000389797 APLP2Q06481 763 aa22.89■■□□□ 1.25
LRCH1-202ENST00000389797 VPS8Q8N3P4 1428 aa22.87■■□□□ 1.25
LRCH1-202ENST00000389797 YTHDC1Q96MU7 727 aaKnown RBP22.87■■□□□ 1.25
LRCH1-202ENST00000389797 URB2Q14146 1524 aaKnown RBP22.86■■□□□ 1.25
LRCH1-202ENST00000389797 POLA1P09884 1462 aaPredicted RBP22.86■■□□□ 1.25
LRCH1-202ENST00000389797 IGF1RP08069 1367 aa22.85■■□□□ 1.25
LRCH1-202ENST00000389797 KIF21AQ7Z4S6 1674 aa22.84■■□□□ 1.25
LRCH1-202ENST00000389797 PRKCSHP14314 528 aaPredicted RBP22.84■■□□□ 1.25
LRCH1-202ENST00000389797 MIER1Q8N108 512 aa22.83■■□□□ 1.25
LRCH1-202ENST00000389797 RAD54L2Q9Y4B4 1467 aa22.82■■□□□ 1.24
LRCH1-202ENST00000389797 ABCA10Q8WWZ4 1543 aa22.8■■□□□ 1.24
LRCH1-202ENST00000389797 PDS5BQ9NTI5 1447 aa22.79■■□□□ 1.24
LRCH1-202ENST00000389797 WDR97A6NE52 1622 aa22.77■■□□□ 1.24
LRCH1-202ENST00000389797 ARAP1Q96P48 1450 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms