Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC23.84■■□□□ 1.41
CUX1P39880 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC23.84■■□□□ 1.41
CUX1P39880 LINC00554-201ENST00000564841 3011 ntBASIC23.84■■□□□ 1.41
CUX1P39880 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC23.84■■□□□ 1.41
CUX1P39880 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC23.84■■□□□ 1.41
CUX1P39880 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 TBC1D27-202ENST00000424239 1573 ntBASIC23.84■■□□□ 1.41
CUX1P39880 CASP3-205ENST00000517513 964 ntTSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUX1P39880 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC23.84■■□□□ 1.41
CUX1P39880 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 USP39-220ENST00000613444 2161 ntTSL 2 BASIC23.83■■□□□ 1.41
CUX1P39880 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC23.83■■□□□ 1.41
CUX1P39880 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
CUX1P39880 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC23.83■■□□□ 1.41
CUX1P39880 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC23.83■■□□□ 1.41
CUX1P39880 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC23.83■■□□□ 1.41
CUX1P39880 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC23.83■■□□□ 1.41
CUX1P39880 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
CUX1P39880 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CUX1P39880 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
CUX1P39880 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC23.83■■□□□ 1.41
CUX1P39880 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC23.83■■□□□ 1.41
CUX1P39880 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC23.83■■□□□ 1.41
CUX1P39880 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC23.83■■□□□ 1.41
CUX1P39880 AL359219.1-201ENST00000556311 934 ntBASIC23.83■■□□□ 1.41
CUX1P39880 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC23.83■■□□□ 1.41
CUX1P39880 ESR1-214ENST00000638569 132 ntTSL 5 BASIC23.83■■□□□ 1.41
CUX1P39880 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC23.83■■□□□ 1.4
CUX1P39880 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC23.83■■□□□ 1.4
CUX1P39880 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.4
CUX1P39880 MECR-202ENST00000373791 2416 ntTSL 2 BASIC23.83■■□□□ 1.4
CUX1P39880 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC23.82■■□□□ 1.4
CUX1P39880 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 GSN-215ENST00000545652 2428 ntTSL 2 BASIC23.82■■□□□ 1.4
CUX1P39880 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CUX1P39880 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC23.82■■□□□ 1.4
CUX1P39880 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CUX1P39880 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC23.82■■□□□ 1.4
CUX1P39880 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CUX1P39880 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC23.82■■□□□ 1.4
CUX1P39880 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CUX1P39880 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC23.82■■□□□ 1.4
CUX1P39880 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC23.82■■□□□ 1.4
CUX1P39880 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
CUX1P39880 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CUX1P39880 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CUX1P39880 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC23.82■■□□□ 1.4
CUX1P39880 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CUX1P39880 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUX1P39880 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 AC007952.5-201ENST00000572818 1486 ntBASIC23.81■■□□□ 1.4
CUX1P39880 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CUX1P39880 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 AC103592.1-201ENST00000394513 664 ntBASIC23.81■■□□□ 1.4
CUX1P39880 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC23.81■■□□□ 1.4
CUX1P39880 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC23.81■■□□□ 1.4
CUX1P39880 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CUX1P39880 ASS1P2-201ENST00000439895 1223 ntBASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms