RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 NISCHQ9Y2I1 1504 aa33■■■□□ 2.87
CTCF-201ENST00000264010 DCAF8L2P0C7V8 631 aa28.63■■■□□ 2.17
CTCF-201ENST00000264010 SHROOM4Q9ULL8 1493 aa28.51■■■□□ 2.15
CTCF-201ENST00000264010 SUPT5HO00267 1087 aaKnown RBP28.1■■■□□ 2.09
CTCF-201ENST00000264010 CCDC180Q9P1Z9 1646 aa27.99■■■□□ 2.07
CTCF-201ENST00000264010 ZCCHC6Q5VYS8 1495 aaKnown RBP27.74■■■□□ 2.03
CTCF-201ENST00000264010 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
CTCF-201ENST00000264010 CHIC1Q5VXU3 224 aa26.74■■□□□ 1.87
CTCF-201ENST00000264010 ABCC9O60706 1549 aa26.72■■□□□ 1.87
CTCF-201ENST00000264010 SCRIBQ14160 1630 aa26.46■■□□□ 1.83
CTCF-201ENST00000264010 MYO15BQ96JP2 1530 aa26.28■■□□□ 1.8
CTCF-201ENST00000264010 TRIM41Q8WV44 630 aa26.25■■□□□ 1.79
CTCF-201ENST00000264010 NACADO15069 1562 aa26.25■■□□□ 1.79
CTCF-201ENST00000264010 RSF1Q96T23 1441 aaPredicted RBP26.07■■□□□ 1.76
CTCF-201ENST00000264010 FAM9AQ8IZU1 332 aaPredicted RBP26.06■■□□□ 1.76
CTCF-201ENST00000264010 LOC105371045A0A1W2PR82 267 aa26■■□□□ 1.75
CTCF-201ENST00000264010 PCGF6Q9BYE7 350 aa25.99■■□□□ 1.75
CTCF-201ENST00000264010 RB1CC1Q8TDY2 1594 aa25.98■■□□□ 1.75
CTCF-201ENST00000264010 EHMT2Q96KQ7 1210 aa25.93■■□□□ 1.74
CTCF-201ENST00000264010 CECR2Q9BXF3 1484 aa25.72■■□□□ 1.71
CTCF-201ENST00000264010 PABPN1Q86U42 306 aaKnown RBP eCLIP25.7■■□□□ 1.7
CTCF-201ENST00000264010 PELP1Q8IZL8 1130 aaKnown RBP25.58■■□□□ 1.69
CTCF-201ENST00000264010 MROH2BQ7Z745 1585 aa25.57■■□□□ 1.68
CTCF-201ENST00000264010 HRCP23327 699 aa25.56■■□□□ 1.68
CTCF-201ENST00000264010 TRIM26Q12899 539 aaPredicted RBP25.55■■□□□ 1.68
CTCF-201ENST00000264010 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
CTCF-201ENST00000264010 PPARGC1BQ86YN6 1023 aaKnown RBP25.36■■□□□ 1.65
CTCF-201ENST00000264010 WIZO95785 1651 aa25.32■■□□□ 1.64
CTCF-201ENST00000264010 UBTFP17480 764 aaKnown RBP25.24■■□□□ 1.63
CTCF-201ENST00000264010 ZEB1P37275 1124 aaPredicted RBP25.19■■□□□ 1.62
CTCF-201ENST00000264010 TOP2AP11388 1531 aaKnown RBP25.11■■□□□ 1.61
CTCF-201ENST00000264010 SMARCA4P51532 1647 aa25.1■■□□□ 1.61
CTCF-201ENST00000264010 CCDC88BA6NC98 1476 aa25.05■■□□□ 1.6
CTCF-201ENST00000264010 TTBK1Q5TCY1 1321 aaPredicted RBP25.03■■□□□ 1.6
CTCF-201ENST00000264010 APLP2Q06481 763 aa25■■□□□ 1.59
CTCF-201ENST00000264010 CSRNP3Q8WYN3 585 aa24.97■■□□□ 1.59
CTCF-201ENST00000264010 MYT1Q01538 1121 aa24.94■■□□□ 1.58
CTCF-201ENST00000264010 BAZ1BQ9UIG0 1483 aaKnown RBP24.88■■□□□ 1.57
CTCF-201ENST00000264010 RANGAP1P46060 587 aaPredicted RBP24.84■■□□□ 1.57
CTCF-201ENST00000264010 CCER1Q8TC90 406 aaPredicted RBP24.83■■□□□ 1.57
CTCF-201ENST00000264010 EEA1Q15075 1411 aa24.82■■□□□ 1.56
CTCF-201ENST00000264010 SMARCA2P51531 1590 aa24.81■■□□□ 1.56
CTCF-201ENST00000264010 ABCC8Q09428 1581 aa24.8■■□□□ 1.56
CTCF-201ENST00000264010 WRNQ14191 1432 aaPredicted RBP eCLIP24.79■■□□□ 1.56
CTCF-201ENST00000264010 UNC13AQ9UPW8 1703 aa24.73■■□□□ 1.55
CTCF-201ENST00000264010 ATAD2BQ9ULI0 1458 aa24.7■■□□□ 1.55
CTCF-201ENST00000264010 BICRAQ9NZM4 1560 aa24.7■■□□□ 1.54
CTCF-201ENST00000264010 SOGA1O94964 1423 aa24.66■■□□□ 1.54
CTCF-201ENST00000264010 TNIKQ9UKE5 1360 aa24.62■■□□□ 1.53
CTCF-201ENST00000264010 CEP162Q5TB80 1403 aa24.6■■□□□ 1.53
CTCF-201ENST00000264010 GOLGA3Q08378 1498 aa24.58■■□□□ 1.53
CTCF-201ENST00000264010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.54■■□□□ 1.52
CTCF-201ENST00000264010 CEP164Q9UPV0 1460 aa24.46■■□□□ 1.51
CTCF-201ENST00000264010 PEG3Q9GZU2 1588 aa24.42■■□□□ 1.5
CTCF-201ENST00000264010 EIF4G1Q04637 1599 aaKnown RBP24.41■■□□□ 1.5
CTCF-201ENST00000264010 CLIP1P30622 1438 aa24.37■■□□□ 1.49
CTCF-201ENST00000264010 HNRNPUL2Q1KMD3 747 aaKnown RBP24.37■■□□□ 1.49
CTCF-201ENST00000264010 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
CTCF-201ENST00000264010 NCAPD3P42695 1498 aa24.28■■□□□ 1.48
CTCF-201ENST00000264010 CENPBP07199 599 aaPredicted RBP24.27■■□□□ 1.48
CTCF-201ENST00000264010 YTHDC1Q96MU7 727 aaKnown RBP24.25■■□□□ 1.47
CTCF-201ENST00000264010 KIF27Q86VH2 1401 aa24.21■■□□□ 1.47
CTCF-201ENST00000264010 ATP1B4Q9UN42 357 aaPredicted RBP24.21■■□□□ 1.47
CTCF-201ENST00000264010 SYNJ1O43426 1573 aa24.18■■□□□ 1.46
CTCF-201ENST00000264010 HMGXB3Q12766 1538 aa24.13■■□□□ 1.45
CTCF-201ENST00000264010 SCAF1Q9H7N4 1312 aaKnown RBP24.12■■□□□ 1.45
CTCF-201ENST00000264010 RAPGEF2Q9Y4G8 1499 aa24.06■■□□□ 1.44
CTCF-201ENST00000264010 VPS8Q8N3P4 1428 aa24.06■■□□□ 1.44
CTCF-201ENST00000264010 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
CTCF-201ENST00000264010 KIF21BO75037 1637 aa24.02■■□□□ 1.44
CTCF-201ENST00000264010 ITGAEP38570 1179 aa23.99■■□□□ 1.43
CTCF-201ENST00000264010 TOP2BQ02880 1626 aa23.98■■□□□ 1.43
CTCF-201ENST00000264010 CFTRP13569 1480 aa23.97■■□□□ 1.43
CTCF-201ENST00000264010 DIEXFQ68CQ4 756 aaKnown RBP23.95■■□□□ 1.42
CTCF-201ENST00000264010 CUX2O14529 1486 aa23.95■■□□□ 1.42
CTCF-201ENST00000264010 P3H3Q8IVL6 736 aa23.86■■□□□ 1.41
CTCF-201ENST00000264010 GTF3C3Q9Y5Q9 886 aa23.85■■□□□ 1.41
CTCF-201ENST00000264010 CARMIL1Q5VZK9 1371 aa23.84■■□□□ 1.41
CTCF-201ENST00000264010 CUX1P39880 1505 aa23.82■■□□□ 1.4
CTCF-201ENST00000264010 ZNF316A6NFI3 1004 aaPredicted RBP23.82■■□□□ 1.4
CTCF-201ENST00000264010 ERICH3Q5RHP9 1530 aa23.79■■□□□ 1.4
CTCF-201ENST00000264010 PRXQ9BXM0 1461 aa23.77■■□□□ 1.4
CTCF-201ENST00000264010 FAM50AQ14320 339 aaKnown RBP23.76■■□□□ 1.39
CTCF-201ENST00000264010 BIVM-ERCC5R4GMW8 1640 aa23.75■■□□□ 1.39
CTCF-201ENST00000264010 FANCD2Q9BXW9 1451 aa23.73■■□□□ 1.39
CTCF-201ENST00000264010 ERICH6Q7L0X2 663 aa23.72■■□□□ 1.39
CTCF-201ENST00000264010 CC2D2AQ9P2K1 1620 aa23.71■■□□□ 1.39
CTCF-201ENST00000264010 IGF1RP08069 1367 aa23.69■■□□□ 1.38
CTCF-201ENST00000264010 FGD5Q6ZNL6 1462 aa23.69■■□□□ 1.38
CTCF-201ENST00000264010 KANK4Q5T7N3 995 aaPredicted RBP23.66■■□□□ 1.38
CTCF-201ENST00000264010 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
CTCF-201ENST00000264010 PDS5BQ9NTI5 1447 aa23.58■■□□□ 1.37
CTCF-201ENST00000264010 CCNB3Q8WWL7 1395 aa23.56■■□□□ 1.36
CTCF-201ENST00000264010 ARAP1Q96P48 1450 aa23.53■■□□□ 1.36
CTCF-201ENST00000264010 CLSPNQ9HAW4 1339 aa23.52■■□□□ 1.36
CTCF-201ENST00000264010 NEUROD1Q13562 356 aa23.49■■□□□ 1.35
CTCF-201ENST00000264010 RAD54L2Q9Y4B4 1467 aa23.47■■□□□ 1.35
CTCF-201ENST00000264010 ARHGAP35Q9NRY4 1499 aa23.46■■□□□ 1.35
CTCF-201ENST00000264010 TDRD9Q8NDG6 1382 aaKnown RBP23.45■■□□□ 1.34
CTCF-201ENST00000264010 NESP48681 1621 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms