RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NISCHQ9Y2I1 1504 aa32.92■■■□□ 2.86
UPF3B-202ENST00000345865 CCDC180Q9P1Z9 1646 aa28.13■■■□□ 2.09
UPF3B-202ENST00000345865 ZCCHC6Q5VYS8 1495 aaKnown RBP27.81■■■□□ 2.04
UPF3B-202ENST00000345865 SHROOM4Q9ULL8 1493 aa27.78■■■□□ 2.04
UPF3B-202ENST00000345865 DCAF8L2P0C7V8 631 aa27.22■■□□□ 1.95
UPF3B-202ENST00000345865 SUPT5HO00267 1087 aaKnown RBP27.11■■□□□ 1.93
UPF3B-202ENST00000345865 DCAF1Q9Y4B6 1507 aa27.05■■□□□ 1.92
UPF3B-202ENST00000345865 MYO15BQ96JP2 1530 aa26.36■■□□□ 1.81
UPF3B-202ENST00000345865 CHIC1Q5VXU3 224 aa26.31■■□□□ 1.8
UPF3B-202ENST00000345865 SCRIBQ14160 1630 aa26.27■■□□□ 1.8
UPF3B-202ENST00000345865 ABCC9O60706 1549 aa26.2■■□□□ 1.78
UPF3B-202ENST00000345865 NACADO15069 1562 aa26.05■■□□□ 1.76
UPF3B-202ENST00000345865 RSF1Q96T23 1441 aaPredicted RBP25.95■■□□□ 1.74
UPF3B-202ENST00000345865 CECR2Q9BXF3 1484 aa25.7■■□□□ 1.7
UPF3B-202ENST00000345865 RB1CC1Q8TDY2 1594 aa25.65■■□□□ 1.7
UPF3B-202ENST00000345865 MROH2BQ7Z745 1585 aa25.58■■□□□ 1.69
UPF3B-202ENST00000345865 LOC105371045A0A1W2PR82 267 aa25.49■■□□□ 1.67
UPF3B-202ENST00000345865 WIZO95785 1651 aa25.44■■□□□ 1.66
UPF3B-202ENST00000345865 UNC13AQ9UPW8 1703 aa25.35■■□□□ 1.65
UPF3B-202ENST00000345865 BAZ1AQ9NRL2 1556 aaPredicted RBP25.29■■□□□ 1.64
UPF3B-202ENST00000345865 TRIM41Q8WV44 630 aa25.28■■□□□ 1.64
UPF3B-202ENST00000345865 PCGF6Q9BYE7 350 aa25.16■■□□□ 1.62
UPF3B-202ENST00000345865 SMARCA4P51532 1647 aa25.13■■□□□ 1.61
UPF3B-202ENST00000345865 FAM9AQ8IZU1 332 aaPredicted RBP25.04■■□□□ 1.6
UPF3B-202ENST00000345865 BICRAQ9NZM4 1560 aa25.03■■□□□ 1.6
UPF3B-202ENST00000345865 EIF4G1Q04637 1599 aaKnown RBP25.03■■□□□ 1.6
UPF3B-202ENST00000345865 TOP2AP11388 1531 aaKnown RBP25.02■■□□□ 1.6
UPF3B-202ENST00000345865 HRCP23327 699 aa25.01■■□□□ 1.59
UPF3B-202ENST00000345865 PABPN1Q86U42 306 aaKnown RBP eCLIP24.98■■□□□ 1.59
UPF3B-202ENST00000345865 CCDC88BA6NC98 1476 aa24.91■■□□□ 1.58
UPF3B-202ENST00000345865 SMARCA2P51531 1590 aa24.89■■□□□ 1.58
UPF3B-202ENST00000345865 EHMT2Q96KQ7 1210 aa24.8■■□□□ 1.56
UPF3B-202ENST00000345865 TRIM26Q12899 539 aaPredicted RBP24.76■■□□□ 1.55
UPF3B-202ENST00000345865 ABCC8Q09428 1581 aa24.75■■□□□ 1.55
UPF3B-202ENST00000345865 PEG3Q9GZU2 1588 aa24.69■■□□□ 1.54
UPF3B-202ENST00000345865 PPARGC1BQ86YN6 1023 aaKnown RBP24.54■■□□□ 1.52
UPF3B-202ENST00000345865 ATAD2BQ9ULI0 1458 aa24.54■■□□□ 1.52
UPF3B-202ENST00000345865 SOGA1O94964 1423 aa24.47■■□□□ 1.51
UPF3B-202ENST00000345865 BAZ1BQ9UIG0 1483 aaKnown RBP24.42■■□□□ 1.5
UPF3B-202ENST00000345865 RUSC2Q8N2Y8 1516 aa24.38■■□□□ 1.49
UPF3B-202ENST00000345865 WRNQ14191 1432 aaPredicted RBP eCLIP24.35■■□□□ 1.49
UPF3B-202ENST00000345865 SYNJ1O43426 1573 aa24.28■■□□□ 1.48
UPF3B-202ENST00000345865 EEA1Q15075 1411 aa24.28■■□□□ 1.48
UPF3B-202ENST00000345865 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
UPF3B-202ENST00000345865 CEP162Q5TB80 1403 aa24.21■■□□□ 1.47
UPF3B-202ENST00000345865 TNIKQ9UKE5 1360 aa24.2■■□□□ 1.47
UPF3B-202ENST00000345865 NCAPD3P42695 1498 aa24.11■■□□□ 1.45
UPF3B-202ENST00000345865 UBTFP17480 764 aaKnown RBP24.1■■□□□ 1.45
UPF3B-202ENST00000345865 GOLGA3Q08378 1498 aa24.09■■□□□ 1.45
UPF3B-202ENST00000345865 HMGXB3Q12766 1538 aa24.09■■□□□ 1.45
UPF3B-202ENST00000345865 ZEB1P37275 1124 aaPredicted RBP24.05■■□□□ 1.44
UPF3B-202ENST00000345865 TOP2BQ02880 1626 aa24■■□□□ 1.43
UPF3B-202ENST00000345865 KIF21BO75037 1637 aa24■■□□□ 1.43
UPF3B-202ENST00000345865 CEP164Q9UPV0 1460 aa23.99■■□□□ 1.43
UPF3B-202ENST00000345865 TTBK1Q5TCY1 1321 aaPredicted RBP23.94■■□□□ 1.42
UPF3B-202ENST00000345865 BIVM-ERCC5R4GMW8 1640 aa23.94■■□□□ 1.42
UPF3B-202ENST00000345865 RAPGEF2Q9Y4G8 1499 aa23.89■■□□□ 1.41
UPF3B-202ENST00000345865 CFTRP13569 1480 aa23.85■■□□□ 1.41
UPF3B-202ENST00000345865 CUX1P39880 1505 aa23.83■■□□□ 1.41
UPF3B-202ENST00000345865 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.83■■□□□ 1.4
UPF3B-202ENST00000345865 CLIP1P30622 1438 aa23.8■■□□□ 1.4
UPF3B-202ENST00000345865 PRXQ9BXM0 1461 aa23.7■■□□□ 1.38
UPF3B-202ENST00000345865 CCER1Q8TC90 406 aaPredicted RBP23.7■■□□□ 1.38
UPF3B-202ENST00000345865 VPS8Q8N3P4 1428 aa23.68■■□□□ 1.38
UPF3B-202ENST00000345865 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
UPF3B-202ENST00000345865 RANGAP1P46060 587 aaPredicted RBP23.66■■□□□ 1.38
UPF3B-202ENST00000345865 ERICH3Q5RHP9 1530 aa23.65■■□□□ 1.38
UPF3B-202ENST00000345865 CC2D2AQ9P2K1 1620 aa23.63■■□□□ 1.37
UPF3B-202ENST00000345865 CADPSQ9ULU8 1353 aa23.61■■□□□ 1.37
UPF3B-202ENST00000345865 KIF27Q86VH2 1401 aa23.61■■□□□ 1.37
UPF3B-202ENST00000345865 ARAP1Q96P48 1450 aa23.5■■□□□ 1.35
UPF3B-202ENST00000345865 APLP2Q06481 763 aa23.45■■□□□ 1.35
UPF3B-202ENST00000345865 CUX2O14529 1486 aa23.44■■□□□ 1.34
UPF3B-202ENST00000345865 FGD5Q6ZNL6 1462 aa23.42■■□□□ 1.34
UPF3B-202ENST00000345865 IGF1RP08069 1367 aa23.42■■□□□ 1.34
UPF3B-202ENST00000345865 HNRNPUL2Q1KMD3 747 aaKnown RBP23.42■■□□□ 1.34
UPF3B-202ENST00000345865 FANCD2Q9BXW9 1451 aa23.37■■□□□ 1.33
UPF3B-202ENST00000345865 ARHGAP35Q9NRY4 1499 aa23.34■■□□□ 1.33
UPF3B-202ENST00000345865 KANK4Q5T7N3 995 aaPredicted RBP23.32■■□□□ 1.32
UPF3B-202ENST00000345865 NESP48681 1621 aa23.31■■□□□ 1.32
UPF3B-202ENST00000345865 CARMIL1Q5VZK9 1371 aa23.28■■□□□ 1.32
UPF3B-202ENST00000345865 DNMBPQ6XZF7 1577 aa23.24■■□□□ 1.31
UPF3B-202ENST00000345865 RAD54L2Q9Y4B4 1467 aa23.22■■□□□ 1.31
UPF3B-202ENST00000345865 TOPBP1Q92547 1522 aa23.21■■□□□ 1.31
UPF3B-202ENST00000345865 POLA1P09884 1462 aaPredicted RBP23.19■■□□□ 1.3
UPF3B-202ENST00000345865 ABCA10Q8WWZ4 1543 aa23.16■■□□□ 1.3
UPF3B-202ENST00000345865 DNAJC5BQ9UF47 199 aa23.14■■□□□ 1.29
UPF3B-202ENST00000345865 RRBP1Q9P2E9 1410 aaKnown RBP23.12■■□□□ 1.29
UPF3B-202ENST00000345865 DIEXFQ68CQ4 756 aaKnown RBP23.11■■□□□ 1.29
UPF3B-202ENST00000345865 LAMC3Q9Y6N6 1575 aa23.11■■□□□ 1.29
UPF3B-202ENST00000345865 URB2Q14146 1524 aaKnown RBP23.08■■□□□ 1.29
UPF3B-202ENST00000345865 ZNF316A6NFI3 1004 aaPredicted RBP23.03■■□□□ 1.28
UPF3B-202ENST00000345865 TIAM1Q13009 1591 aa23.03■■□□□ 1.28
UPF3B-202ENST00000345865 CCNB3Q8WWL7 1395 aa23■■□□□ 1.27
UPF3B-202ENST00000345865 WDR97A6NE52 1622 aa23■■□□□ 1.27
UPF3B-202ENST00000345865 MAP3K1Q13233 1512 aa23■■□□□ 1.27
UPF3B-202ENST00000345865 P3H3Q8IVL6 736 aa22.99■■□□□ 1.27
UPF3B-202ENST00000345865 DHX57Q6P158 1386 aaKnown RBP22.99■■□□□ 1.27
UPF3B-202ENST00000345865 CUL7Q14999 1698 aa22.98■■□□□ 1.27
UPF3B-202ENST00000345865 PCF11O94913 1555 aaKnown RBP22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms