Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PEX5-212ENST00000539304 708 ntTSL 212.41□□□□□ -0.424e-7■■■■■ 86.2
SF3B1O75533 SBF2-205ENST00000525697 923 ntTSL 312.39□□□□□ -0.434e-7■■■■■ 86.2
SF3B1O75533 TRIOBP-202ENST00000344404 7300 ntTSL 212.39□□□□□ -0.434e-7■■■■■ 86.2
SF3B1O75533 SNX1-204ENST00000559061 550 ntTSL 512.37□□□□□ -0.434e-7■■■■■ 86.2
SF3B1O75533 PHYKPL-216ENST00000510991 814 ntTSL 312.37□□□□□ -0.435e-6■■■■■ 86.2
SF3B1O75533 MEGF8-202ENST00000334370 10966 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.434e-7■■■■■ 86.2
SF3B1O75533 WDR44-205ENST00000493448 1041 ntTSL 412.32□□□□□ -0.443e-8■■■■■ 86.2
SF3B1O75533 INO80-211ENST00000616814 4272 ntTSL 5 BASIC12.28□□□□□ -0.444e-7■■■■■ 86.2
SF3B1O75533 ZNF3-213ENST00000479192 640 ntTSL 212.27□□□□□ -0.454e-7■■■■■ 86.2
SF3B1O75533 USP11-206ENST00000469080 3467 ntTSL 1 (best)12.25□□□□□ -0.454e-7■■■■■ 86.2
SF3B1O75533 ZSCAN29-208ENST00000570181 1724 ntTSL 1 (best)12.23□□□□□ -0.454e-7■■■■■ 86.2
SF3B1O75533 TCF25-210ENST00000563484 468 ntTSL 212.21□□□□□ -0.453e-13■■■■■ 86.2
SF3B1O75533 G3BP2-201ENST00000357854 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.464e-7■■■■■ 86.2
SF3B1O75533 PI4KA-217ENST00000492581 3925 ntTSL 212.17□□□□□ -0.464e-7■■■■■ 86.2
SF3B1O75533 RPL4-202ENST00000561554 580 ntTSL 412.11□□□□□ -0.474e-7■■■■■ 86.2
SF3B1O75533 WDR59-208ENST00000563111 583 ntTSL 412.09□□□□□ -0.474e-7■■■■■ 86.2
SF3B1O75533 TALDO1-205ENST00000530440 710 ntTSL 312.09□□□□□ -0.472e-7■■■■■ 86.2
SF3B1O75533 RUVBL2-212ENST00000627972 1065 ntTSL 5 BASIC12.04□□□□□ -0.484e-7■■■■■ 86.2
SF3B1O75533 RPL4-215ENST00000568588 1864 ntTSL 2 BASIC12.03□□□□□ -0.484e-7■■■■■ 86.2
SF3B1O75533 CBL-203ENST00000634586 3457 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.494e-7■■■■■ 86.2
SF3B1O75533 NDST1-201ENST00000261797 8030 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.494e-7■■■■■ 86.2
SF3B1O75533 RPL4-217ENST00000569696 569 ntTSL 511.94□□□□□ -0.54e-7■■■■■ 86.2
SF3B1O75533 RPL4-213ENST00000566624 819 ntTSL 211.94□□□□□ -0.54e-7■■■■■ 86.2
SF3B1O75533 NEDD8-204ENST00000526430 286 ntTSL 311.9□□□□□ -0.54e-7■■■■■ 86.2
SF3B1O75533 TRIOBP-204ENST00000406386 10129 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.54e-7■■■■■ 86.2
SF3B1O75533 RASGEF1A-201ENST00000374455 632 ntTSL 511.89□□□□□ -0.514e-7■■■■■ 86.2
SF3B1O75533 PEX5-220ENST00000545845 562 ntTSL 411.88□□□□□ -0.514e-7■■■■■ 86.2
SF3B1O75533 KCNJ11-205ENST00000528992 466 ntTSL 411.86□□□□□ -0.514e-7■■■■■ 86.2
SF3B1O75533 ZSCAN29-201ENST00000396972 2831 ntTSL 5 BASIC11.86□□□□□ -0.514e-7■■■■■ 86.2
SF3B1O75533 ZSCAN29-206ENST00000566849 2834 ntTSL 1 (best)11.86□□□□□ -0.514e-7■■■■■ 86.2
SF3B1O75533 KCTD20-204ENST00000449081 4094 ntTSL 1 (best) BASIC11.84□□□□□ -0.514e-7■■■■■ 86.2
SF3B1O75533 SMG9-206ENST00000597598 1077 ntTSL 511.84□□□□□ -0.513e-13■■■■■ 86.2
SF3B1O75533 NDUFA12-206ENST00000547986 487 ntTSL 2 BASIC11.82□□□□□ -0.524e-7■■■■■ 86.2
SF3B1O75533 TBRG1-201ENST00000284290 4468 ntTSL 1 (best)11.8□□□□□ -0.524e-7■■■■■ 86.2
SF3B1O75533 MTG1-206ENST00000492266 413 ntTSL 211.8□□□□□ -0.524e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-208ENST00000477177 562 ntTSL 311.79□□□□□ -0.527e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-201ENST00000259037 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.527e-7■■■■■ 86.2
SF3B1O75533 RNF220-210ENST00000474394 810 ntTSL 311.72□□□□□ -0.535e-6■■■■■ 86.2
SF3B1O75533 CRYZ-205ENST00000417775 2301 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.543e-8■■■■■ 86.2
SF3B1O75533 BRPF3-206ENST00000449261 4816 ntTSL 511.66□□□□□ -0.544e-7■■■■■ 86.2
SF3B1O75533 MEGF8-203ENST00000378073 11034 ntTSL 5 BASIC11.66□□□□□ -0.544e-7■■■■■ 86.2
SF3B1O75533 RILPL1-203ENST00000544468 769 ntTSL 311.62□□□□□ -0.554e-7■■■■■ 86.2
SF3B1O75533 TCF4-206ENST00000537856 1996 ntTSL 2 BASIC11.61□□□□□ -0.554e-7■■■■■ 86.2
SF3B1O75533 G3BP2-204ENST00000499709 508 ntTSL 411.6□□□□□ -0.554e-7■■■■■ 86.2
SF3B1O75533 ARF1-201ENST00000272102 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.554e-7■■■■■ 86.2
SF3B1O75533 INO80-205ENST00000558357 5503 ntTSL 1 (best)11.59□□□□□ -0.554e-7■■■■■ 86.2
SF3B1O75533 EIF2B2-201ENST00000266126 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.554e-7■■■■■ 86.2
SF3B1O75533 RPL4-205ENST00000564439 582 ntTSL 311.59□□□□□ -0.554e-7■■■■■ 86.2
SF3B1O75533 NEDD8-205ENST00000527046 847 ntTSL 211.57□□□□□ -0.564e-7■■■■■ 86.2
SF3B1O75533 NVL-208ENST00000467882 1310 ntTSL 511.52□□□□□ -0.574e-7■■■■■ 86.2
SF3B1O75533 PRPF40A-202ENST00000410080 8048 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.584e-7■■■■■ 86.2
SF3B1O75533 NEDD8-MDP1-202ENST00000534348 595 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.584e-7■■■■■ 86.2
SF3B1O75533 ATL3-204ENST00000540699 714 ntTSL 311.38□□□□□ -0.594e-7■■■■■ 86.2
SF3B1O75533 PSMD2-211ENST00000466987 530 ntTSL 211.35□□□□□ -0.594e-7■■■■■ 86.2
SF3B1O75533 EXO1-206ENST00000469419 754 ntTSL 311.35□□□□□ -0.594e-7■■■■■ 86.2
SF3B1O75533 NEDD8-202ENST00000396828 626 ntTSL 211.35□□□□□ -0.594e-7■■■■■ 86.2
SF3B1O75533 WDR59-204ENST00000562331 570 ntTSL 411.33□□□□□ -0.64e-7■■■■■ 86.2
SF3B1O75533 TAF1B-211ENST00000625239 273 ntTSL 5 BASIC11.32□□□□□ -0.64e-7■■■■■ 86.2
SF3B1O75533 ZBTB38-209ENST00000509842 1434 ntTSL 1 (best)11.31□□□□□ -0.64e-6■■■■■ 86.2
SF3B1O75533 MED25-206ENST00000594998 3339 ntTSL 1 (best)11.31□□□□□ -0.62e-6■■■■■ 86.2
SF3B1O75533 ATG16L1-203ENST00000392017 3405 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.614e-7■■■■■ 86.2
SF3B1O75533 ZSCAN29-202ENST00000396976 5595 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.614e-7■■■■■ 86.2
SF3B1O75533 ZSCAN29-204ENST00000562072 2345 ntTSL 1 (best) BASIC11.22□□□□□ -0.614e-7■■■■■ 86.2
SF3B1O75533 RPL4-201ENST00000307961 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.624e-7■■■■■ 86.2
SF3B1O75533 PLA2G2C-202ENST00000429261 3249 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.624e-7■■■■■ 86.2
SF3B1O75533 RPLP0-221ENST00000551258 966 ntTSL 511.17□□□□□ -0.624e-7■■■■■ 86.2
SF3B1O75533 STIP1-211ENST00000543847 772 ntTSL 1 (best) BASIC11.11□□□□□ -0.637e-6■■■■■ 86.2
SF3B1O75533 SSFA2-208ENST00000454579 3772 ntTSL 211.08□□□□□ -0.644e-7■■■■■ 86.2
SF3B1O75533 NDUFA12-204ENST00000547157 276 ntTSL 2 BASIC11.07□□□□□ -0.644e-7■■■■■ 86.2
SF3B1O75533 EXO1-207ENST00000493702 783 ntTSL 511.07□□□□□ -0.644e-7■■■■■ 86.2
SF3B1O75533 NUDT21-205ENST00000567110 607 ntTSL 211.05□□□□□ -0.643e-8■■■■■ 86.2
SF3B1O75533 SAMD7-202ENST00000428432 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.644e-7■■■■■ 86.2
SF3B1O75533 SAMD7-201ENST00000335556 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.654e-7■■■■■ 86.2
SF3B1O75533 GSR-202ENST00000521479 582 ntTSL 311.02□□□□□ -0.654e-7■■■■■ 86.2
SF3B1O75533 DNAJC10-206ENST00000491074 3962 ntTSL 1 (best)11.02□□□□□ -0.654e-7■■■■■ 86.2
SF3B1O75533 SORD-203ENST00000558580 1395 ntTSL 5 BASIC10.99□□□□□ -0.654e-7■■■■■ 86.2
SF3B1O75533 SMG9-207ENST00000598860 574 ntTSL 210.99□□□□□ -0.653e-13■■■■■ 86.2
SF3B1O75533 TBRG1-203ENST00000441174 4004 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.654e-7■■■■■ 86.2
SF3B1O75533 RPLP0-210ENST00000547475 792 ntTSL 310.96□□□□□ -0.654e-7■■■■■ 86.2
SF3B1O75533 G3BP2-217ENST00000511868 573 ntTSL 210.96□□□□□ -0.654e-7■■■■■ 86.2
SF3B1O75533 PEX5-202ENST00000266564 3170 ntTSL 1 (best) BASIC10.93□□□□□ -0.664e-7■■■■■ 86.2
SF3B1O75533 PSMD2-206ENST00000439383 2633 ntTSL 2 BASIC10.91□□□□□ -0.664e-7■■■■■ 86.2
SF3B1O75533 TBRG1-202ENST00000438907 842 ntTSL 1 (best)10.89□□□□□ -0.674e-7■■■■■ 86.2
SF3B1O75533 NMT2-201ENST00000378150 2457 ntTSL 2 BASIC10.8□□□□□ -0.684e-7■■■■■ 86.2
SF3B1O75533 RHOT1-210ENST00000581094 3231 ntTSL 2 BASIC10.77□□□□□ -0.682e-6■■■■■ 86.2
SF3B1O75533 ATG16L1-205ENST00000392020 3213 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.694e-7■■■■■ 86.2
SF3B1O75533 TAF1B-202ENST00000402170 715 ntTSL 510.72□□□□□ -0.694e-7■■■■■ 86.2
SF3B1O75533 KPNA5-201ENST00000356348 2150 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.694e-7■■■■■ 86.2
SF3B1O75533 CIT-218ENST00000546026 677 ntTSL 310.68□□□□□ -0.74e-7■■■■■ 86.2
SF3B1O75533 CD2BP2-201ENST00000305596 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.714e-7■■■■■ 86.2
SF3B1O75533 ZZEF1-206ENST00000572831 558 ntTSL 410.55□□□□□ -0.724e-7■■■■■ 86.2
SF3B1O75533 GPBP1L1-214ENST00000498128 559 ntTSL 310.55□□□□□ -0.721e-6■■■■■ 86.2
SF3B1O75533 PABPN1-208ENST00000557702 778 ntTSL 2 BASIC10.55□□□□□ -0.724e-7■■■■■ 86.2
SF3B1O75533 FTSJ3-212ENST00000583202 908 ntTSL 310.54□□□□□ -0.724e-7■■■■■ 86.2
SF3B1O75533 CC2D2A-202ENST00000424120 5249 ntAPPRIS P3 TSL 5 BASIC10.48□□□□□ -0.734e-7■■■■■ 86.2
SF3B1O75533 BRPF3-204ENST00000441730 3329 ntTSL 510.47□□□□□ -0.734e-7■■■■■ 86.2
SF3B1O75533 PHACTR1-201ENST00000332995 5332 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.734e-7■■■■■ 86.2
SF3B1O75533 CIPC-206ENST00000555611 599 ntTSL 4 BASIC10.45□□□□□ -0.744e-7■■■■■ 86.2
SF3B1O75533 ITGA9-AS1-219ENST00000630986 588 ntTSL 210.45□□□□□ -0.744e-7■■■■■ 86.2
SF3B1O75533 NONO-205ENST00000418921 703 ntTSL 510.43□□□□□ -0.744e-7■■■■■ 86.2
Retrieved 100 of 46,956 protein–RNA pairs in 1909.6 ms