RNA–Protein interactions for RNA: ENST00000469080.5

USP11-206, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 1 (best)

Gene USP11, Length 3,467 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-206ENST00000469080 NISCHQ9Y2I1 1504 aa24.36■■□□□ 1.49
USP11-206ENST00000469080 DCAF8L2P0C7V8 631 aa22.34■■□□□ 1.17
USP11-206ENST00000469080 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
USP11-206ENST00000469080 SUPT5HO00267 1087 aaKnown RBP21.69■■□□□ 1.06
USP11-206ENST00000469080 PELP1Q8IZL8 1130 aaKnown RBP20.83■□□□□ 0.93
USP11-206ENST00000469080 CCDC180Q9P1Z9 1646 aa20.81■□□□□ 0.92
USP11-206ENST00000469080 EHMT2Q96KQ7 1210 aa20.7■□□□□ 0.9
USP11-206ENST00000469080 ABCC9O60706 1549 aa20.54■□□□□ 0.88
USP11-206ENST00000469080 ZCCHC6Q5VYS8 1495 aaKnown RBP20.37■□□□□ 0.85
USP11-206ENST00000469080 FAM9AQ8IZU1 332 aaPredicted RBP20.31■□□□□ 0.84
USP11-206ENST00000469080 MYT1Q01538 1121 aa20.3■□□□□ 0.84
USP11-206ENST00000469080 CHIC1Q5VXU3 224 aa20.16■□□□□ 0.82
USP11-206ENST00000469080 LOC105371045A0A1W2PR82 267 aa20.11■□□□□ 0.81
USP11-206ENST00000469080 HRCP23327 699 aa20.04■□□□□ 0.8
USP11-206ENST00000469080 PCGF6Q9BYE7 350 aa19.95■□□□□ 0.78
USP11-206ENST00000469080 PABPN1Q86U42 306 aaKnown RBP eCLIP19.88■□□□□ 0.77
USP11-206ENST00000469080 SCRIBQ14160 1630 aa19.86■□□□□ 0.77
USP11-206ENST00000469080 TRIM41Q8WV44 630 aa19.84■□□□□ 0.77
USP11-206ENST00000469080 TTBK1Q5TCY1 1321 aaPredicted RBP19.84■□□□□ 0.77
USP11-206ENST00000469080 PPARGC1BQ86YN6 1023 aaKnown RBP19.84■□□□□ 0.77
USP11-206ENST00000469080 DCAF1Q9Y4B6 1507 aa19.75■□□□□ 0.75
USP11-206ENST00000469080 MYO15BQ96JP2 1530 aa19.72■□□□□ 0.75
USP11-206ENST00000469080 RANGAP1P46060 587 aaPredicted RBP19.6■□□□□ 0.73
USP11-206ENST00000469080 NACADO15069 1562 aa19.59■□□□□ 0.73
USP11-206ENST00000469080 SCAF1Q9H7N4 1312 aaKnown RBP19.58■□□□□ 0.73
USP11-206ENST00000469080 RB1CC1Q8TDY2 1594 aa19.51■□□□□ 0.71
USP11-206ENST00000469080 CECR2Q9BXF3 1484 aa19.4■□□□□ 0.7
USP11-206ENST00000469080 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
USP11-206ENST00000469080 UBTFP17480 764 aaKnown RBP19.22■□□□□ 0.67
USP11-206ENST00000469080 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
USP11-206ENST00000469080 UNC13AQ9UPW8 1703 aa19.06■□□□□ 0.64
USP11-206ENST00000469080 PRKCSHP14314 528 aaPredicted RBP19.04■□□□□ 0.64
USP11-206ENST00000469080 TRIM26Q12899 539 aaPredicted RBP19.03■□□□□ 0.64
USP11-206ENST00000469080 BCL11AQ9H165 835 aa19.03■□□□□ 0.64
USP11-206ENST00000469080 BICRAQ9NZM4 1560 aa18.97■□□□□ 0.63
USP11-206ENST00000469080 WIZO95785 1651 aa18.95■□□□□ 0.62
USP11-206ENST00000469080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
USP11-206ENST00000469080 GTF3C3Q9Y5Q9 886 aa18.84■□□□□ 0.61
USP11-206ENST00000469080 CCER1Q8TC90 406 aaPredicted RBP18.84■□□□□ 0.61
USP11-206ENST00000469080 ACIN1Q9UKV3 1341 aaKnown RBP18.79■□□□□ 0.6
USP11-206ENST00000469080 ATP1B4Q9UN42 357 aaPredicted RBP18.79■□□□□ 0.6
USP11-206ENST00000469080 CENPBP07199 599 aaPredicted RBP18.76■□□□□ 0.59
USP11-206ENST00000469080 ABCC8Q09428 1581 aa18.76■□□□□ 0.59
USP11-206ENST00000469080 APLP2Q06481 763 aa18.75■□□□□ 0.59
USP11-206ENST00000469080 NEUROD1Q13562 356 aa18.75■□□□□ 0.59
USP11-206ENST00000469080 HNRNPUL2Q1KMD3 747 aaKnown RBP18.75■□□□□ 0.59
USP11-206ENST00000469080 BAZ1AQ9NRL2 1556 aaPredicted RBP18.74■□□□□ 0.59
USP11-206ENST00000469080 CSRNP3Q8WYN3 585 aa18.69■□□□□ 0.58
USP11-206ENST00000469080 SMARCA4P51532 1647 aa18.67■□□□□ 0.58
USP11-206ENST00000469080 ITGAEP38570 1179 aa18.65■□□□□ 0.58
USP11-206ENST00000469080 CCDC88BA6NC98 1476 aa18.65■□□□□ 0.58
USP11-206ENST00000469080 SOGA1O94964 1423 aa18.63■□□□□ 0.57
USP11-206ENST00000469080 ERICH6Q7L0X2 663 aa18.55■□□□□ 0.56
USP11-206ENST00000469080 RUSC2Q8N2Y8 1516 aa18.53■□□□□ 0.56
USP11-206ENST00000469080 P3H3Q8IVL6 736 aa18.52■□□□□ 0.55
USP11-206ENST00000469080 ATAD2BQ9ULI0 1458 aa18.51■□□□□ 0.55
USP11-206ENST00000469080 ZEB1P37275 1124 aaPredicted RBP18.48■□□□□ 0.55
USP11-206ENST00000469080 EIF4G1Q04637 1599 aaKnown RBP18.47■□□□□ 0.55
USP11-206ENST00000469080 DNAJC5BQ9UF47 199 aa18.46■□□□□ 0.55
USP11-206ENST00000469080 BAZ1BQ9UIG0 1483 aaKnown RBP18.45■□□□□ 0.54
USP11-206ENST00000469080 WRNQ14191 1432 aaPredicted RBP eCLIP18.4■□□□□ 0.54
USP11-206ENST00000469080 TOP2AP11388 1531 aaKnown RBP18.39■□□□□ 0.54
USP11-206ENST00000469080 CEP162Q5TB80 1403 aa18.34■□□□□ 0.53
USP11-206ENST00000469080 ARID3CA6NKF2 412 aa18.32■□□□□ 0.52
USP11-206ENST00000469080 YTHDC1Q96MU7 727 aaKnown RBP18.32■□□□□ 0.52
USP11-206ENST00000469080 SMARCA2P51531 1590 aa18.3■□□□□ 0.52
USP11-206ENST00000469080 ANP32EQ9BTT0 268 aa18.3■□□□□ 0.52
USP11-206ENST00000469080 CC2D2AQ9P2K1 1620 aa18.26■□□□□ 0.51
USP11-206ENST00000469080 NCAPD3P42695 1498 aa18.22■□□□□ 0.51
USP11-206ENST00000469080 PEG3Q9GZU2 1588 aa18.18■□□□□ 0.5
USP11-206ENST00000469080 CLIP1P30622 1438 aa18.15■□□□□ 0.5
USP11-206ENST00000469080 FAM50AQ14320 339 aaKnown RBP18.14■□□□□ 0.49
USP11-206ENST00000469080 TNIKQ9UKE5 1360 aa18.09■□□□□ 0.49
USP11-206ENST00000469080 GOLGA3Q08378 1498 aa18.08■□□□□ 0.49
USP11-206ENST00000469080 RAPGEF2Q9Y4G8 1499 aa18.06■□□□□ 0.48
USP11-206ENST00000469080 DIEXFQ68CQ4 756 aaKnown RBP18.06■□□□□ 0.48
USP11-206ENST00000469080 FBLN2P98095 1184 aa18.05■□□□□ 0.48
USP11-206ENST00000469080 KANK4Q5T7N3 995 aaPredicted RBP18.04■□□□□ 0.48
USP11-206ENST00000469080 HMGXB3Q12766 1538 aa18.01■□□□□ 0.47
USP11-206ENST00000469080 SYNJ1O43426 1573 aa18■□□□□ 0.47
USP11-206ENST00000469080 NESP48681 1621 aa18■□□□□ 0.47
USP11-206ENST00000469080 CEP164Q9UPV0 1460 aa17.95■□□□□ 0.46
USP11-206ENST00000469080 CADPSQ9ULU8 1353 aa17.95■□□□□ 0.46
USP11-206ENST00000469080 CUX2O14529 1486 aa17.92■□□□□ 0.46
USP11-206ENST00000469080 EEA1Q15075 1411 aa17.9■□□□□ 0.46
USP11-206ENST00000469080 CNGB1Q14028 1251 aaPredicted RBP17.88■□□□□ 0.45
USP11-206ENST00000469080 KIF27Q86VH2 1401 aa17.87■□□□□ 0.45
USP11-206ENST00000469080 CFTRP13569 1480 aa17.86■□□□□ 0.45
USP11-206ENST00000469080 HIRIP3Q9BW71 556 aaPredicted RBP17.85■□□□□ 0.45
USP11-206ENST00000469080 TDRD9Q8NDG6 1382 aaKnown RBP17.85■□□□□ 0.45
USP11-206ENST00000469080 ANO8Q9HCE9 1232 aaPredicted RBP17.82■□□□□ 0.44
USP11-206ENST00000469080 CHIC2Q9UKJ5 165 aa17.8■□□□□ 0.44
USP11-206ENST00000469080 ZNF316A6NFI3 1004 aaPredicted RBP17.78■□□□□ 0.44
USP11-206ENST00000469080 CARMIL1Q5VZK9 1371 aa17.78■□□□□ 0.44
USP11-206ENST00000469080 RAD54L2Q9Y4B4 1467 aa17.76■□□□□ 0.43
USP11-206ENST00000469080 FANCD2Q9BXW9 1451 aa17.75■□□□□ 0.43
USP11-206ENST00000469080 VPS8Q8N3P4 1428 aa17.75■□□□□ 0.43
USP11-206ENST00000469080 TSHZ2Q9NRE2 1034 aa17.74■□□□□ 0.43
USP11-206ENST00000469080 CUX1P39880 1505 aa17.71■□□□□ 0.43
USP11-206ENST00000469080 MIER1Q8N108 512 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms