RNA–Protein interactions for RNA: ENST00000410080.5

PRPF40A-202, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PRPF40A, Length 8,048 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-202ENST00000410080 DCAF8L2P0C7V8 631 aa19.63■□□□□ 0.73
PRPF40A-202ENST00000410080 EHMT2Q96KQ7 1210 aa18.3■□□□□ 0.52
PRPF40A-202ENST00000410080 SUPT5HO00267 1087 aaKnown RBP18.19■□□□□ 0.5
PRPF40A-202ENST00000410080 SHROOM4Q9ULL8 1493 aa18■□□□□ 0.47
PRPF40A-202ENST00000410080 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
PRPF40A-202ENST00000410080 FAM9AQ8IZU1 332 aaPredicted RBP17.76■□□□□ 0.43
PRPF40A-202ENST00000410080 APLP2Q06481 763 aa17.72■□□□□ 0.43
PRPF40A-202ENST00000410080 NISCHQ9Y2I1 1504 aa17.68■□□□□ 0.42
PRPF40A-202ENST00000410080 TTBK1Q5TCY1 1321 aaPredicted RBP17.63■□□□□ 0.41
PRPF40A-202ENST00000410080 RANGAP1P46060 587 aaPredicted RBP17.48■□□□□ 0.39
PRPF40A-202ENST00000410080 ATP1B4Q9UN42 357 aaPredicted RBP17.46■□□□□ 0.39
PRPF40A-202ENST00000410080 ERICH6Q7L0X2 663 aa17.45■□□□□ 0.38
PRPF40A-202ENST00000410080 CCER1Q8TC90 406 aaPredicted RBP17.15■□□□□ 0.34
PRPF40A-202ENST00000410080 MYT1LQ9UL68 1186 aa17.08■□□□□ 0.32
PRPF40A-202ENST00000410080 PCGF6Q9BYE7 350 aa17.07■□□□□ 0.32
PRPF40A-202ENST00000410080 CHIC1Q5VXU3 224 aa17.02■□□□□ 0.32
PRPF40A-202ENST00000410080 MYT1Q01538 1121 aa16.9■□□□□ 0.3
PRPF40A-202ENST00000410080 NEFLP07196 543 aa16.81■□□□□ 0.28
PRPF40A-202ENST00000410080 POLR3GLQ9BT43 218 aa16.8■□□□□ 0.28
PRPF40A-202ENST00000410080 SLC4A1APQ9BWU0 796 aaKnown RBP16.77■□□□□ 0.27
PRPF40A-202ENST00000410080 CENPBP07199 599 aaPredicted RBP16.77■□□□□ 0.27
PRPF40A-202ENST00000410080 YTHDC1Q96MU7 727 aaKnown RBP16.76■□□□□ 0.27
PRPF40A-202ENST00000410080 UBTFP17480 764 aaKnown RBP16.76■□□□□ 0.27
PRPF40A-202ENST00000410080 DAXXQ9UER7 740 aaPredicted RBP16.72■□□□□ 0.27
PRPF40A-202ENST00000410080 TRIM41Q8WV44 630 aa16.71■□□□□ 0.27
PRPF40A-202ENST00000410080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-202ENST00000410080 HNRNPUL2Q1KMD3 747 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-202ENST00000410080 CNGB1Q14028 1251 aaPredicted RBP16.69■□□□□ 0.26
PRPF40A-202ENST00000410080 PPARGC1BQ86YN6 1023 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-202ENST00000410080 ITGAEP38570 1179 aa16.51■□□□□ 0.23
PRPF40A-202ENST00000410080 SLC24A1O60721 1099 aa16.38■□□□□ 0.21
PRPF40A-202ENST00000410080 ZEB1P37275 1124 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-202ENST00000410080 CLSPNQ9HAW4 1339 aa16.32■□□□□ 0.2
PRPF40A-202ENST00000410080 ZNF316A6NFI3 1004 aaPredicted RBP16.29■□□□□ 0.2
PRPF40A-202ENST00000410080 BCL11AQ9H165 835 aa16.26■□□□□ 0.19
PRPF40A-202ENST00000410080 BCANQ96GW7 911 aa16.17■□□□□ 0.18
PRPF40A-202ENST00000410080 ZBTB47Q9UFB7 747 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-202ENST00000410080 PLPPR3Q6T4P5 718 aa16.04■□□□□ 0.16
PRPF40A-202ENST00000410080 RTL5Q5HYW3 569 aaPredicted RBP15.98■□□□□ 0.15
PRPF40A-202ENST00000410080 LOC105371045A0A1W2PR82 267 aa15.96■□□□□ 0.15
PRPF40A-202ENST00000410080 FAM50AQ14320 339 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-202ENST00000410080 TRIM52Q96A61 297 aa15.93■□□□□ 0.14
PRPF40A-202ENST00000410080 TRIM26Q12899 539 aaPredicted RBP15.92■□□□□ 0.14
PRPF40A-202ENST00000410080 FBLN2P98095 1184 aa15.91■□□□□ 0.14
PRPF40A-202ENST00000410080 ZNF326Q5BKZ1 582 aaKnown RBP15.89■□□□□ 0.13
PRPF40A-202ENST00000410080 PABPN1Q86U42 306 aaKnown RBP eCLIP15.88■□□□□ 0.132e-6■□□□□ 9.6
PRPF40A-202ENST00000410080 CANXP27824 592 aaKnown RBP15.85■□□□□ 0.13
PRPF40A-202ENST00000410080 NEUROD1Q13562 356 aa15.81■□□□□ 0.12
PRPF40A-202ENST00000410080 ABCC9O60706 1549 aa15.79■□□□□ 0.12
PRPF40A-202ENST00000410080 NEFMP07197 916 aa15.78■□□□□ 0.12
PRPF40A-202ENST00000410080 HRCP23327 699 aa15.72■□□□□ 0.11
PRPF40A-202ENST00000410080 A0A0G2JS52 829 aa15.72■□□□□ 0.11
PRPF40A-202ENST00000410080 ESF1Q9H501 851 aaKnown RBP15.71■□□□□ 0.11
PRPF40A-202ENST00000410080 SCAF1Q9H7N4 1312 aaKnown RBP15.71■□□□□ 0.11
PRPF40A-202ENST00000410080 ARID3CA6NKF2 412 aa15.64■□□□□ 0.09
PRPF40A-202ENST00000410080 STAG3Q9UJ98 1225 aa15.63■□□□□ 0.09
PRPF40A-202ENST00000410080 PLEKHG5O94827 1062 aa15.56■□□□□ 0.08
PRPF40A-202ENST00000410080 CHGAP10645 457 aaKnown RBP15.52■□□□□ 0.07
PRPF40A-202ENST00000410080 P3H3Q8IVL6 736 aa15.51■□□□□ 0.07
PRPF40A-202ENST00000410080 ANP32CO43423 234 aa15.5■□□□□ 0.07
PRPF40A-202ENST00000410080 HSP90AA1P07900 732 aaKnown RBP15.5■□□□□ 0.07
PRPF40A-202ENST00000410080 DIEXFQ68CQ4 756 aaKnown RBP15.49■□□□□ 0.07
PRPF40A-202ENST00000410080 ZNF777Q9ULD5 760 aaPredicted RBP15.49■□□□□ 0.07
PRPF40A-202ENST00000410080 CDK11AQ9UQ88 783 aaPredicted RBP15.49■□□□□ 0.07
PRPF40A-202ENST00000410080 NPM2Q86SE8 214 aaKnown RBP15.45■□□□□ 0.06
PRPF40A-202ENST00000410080 ZBTB7CA1YPR0 619 aa15.44■□□□□ 0.06
PRPF40A-202ENST00000410080 TULP1O00294 542 aaPredicted RBP15.44■□□□□ 0.06
PRPF40A-202ENST00000410080 CDK11BP21127 795 aaKnown RBP15.42■□□□□ 0.06
PRPF40A-202ENST00000410080 SENP3Q9H4L4 574 aaPredicted RBP15.41■□□□□ 0.06
PRPF40A-202ENST00000410080 ANP32BQ92688 251 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-202ENST00000410080 C14orf37Q86TY3 774 aa15.33■□□□□ 0.04
PRPF40A-202ENST00000410080 ANP32AP39687 249 aaKnown RBP15.3■□□□□ 0.04
PRPF40A-202ENST00000410080 NPM1P06748 294 aaKnown RBP eCLIP15.29■□□□□ 0.04
PRPF40A-202ENST00000410080 ARXQ96QS3 562 aa15.29■□□□□ 0.04
PRPF40A-202ENST00000410080 SALL2Q9Y467 1007 aaPredicted RBP15.27■□□□□ 0.04
PRPF40A-202ENST00000410080 NCBP3Q53F19 620 aaKnown RBP15.26■□□□□ 0.03
PRPF40A-202ENST00000410080 HAP1P54257 671 aaPredicted RBP15.25■□□□□ 0.03
PRPF40A-202ENST00000410080 SCRIBQ14160 1630 aa15.23■□□□□ 0.03
PRPF40A-202ENST00000410080 EIF5BO60841 1220 aaKnown RBP15.23■□□□□ 0.03
PRPF40A-202ENST00000410080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.23■□□□□ 0.034e-7■■■□□ 15.7
PRPF40A-202ENST00000410080 UPF2Q9HAU5 1272 aaKnown RBP15.23■□□□□ 0.03
PRPF40A-202ENST00000410080 NPHP1O15259 732 aa15.18■□□□□ 0.02
PRPF40A-202ENST00000410080 GTF3C3Q9Y5Q9 886 aa15.13■□□□□ 0.01
PRPF40A-202ENST00000410080 TAOK2Q9UL54 1235 aa15.12■□□□□ 0.01
PRPF40A-202ENST00000410080 ARID4BQ4LE39 1312 aaPredicted RBP15.09■□□□□ 0.01
PRPF40A-202ENST00000410080 TPRNQ4KMQ1 711 aa15.08■□□□□ 0
PRPF40A-202ENST00000410080 MYH16Q9H6N6 1097 aa15.07■□□□□ 0
PRPF40A-202ENST00000410080 FAM9BQ8IZU0 186 aa15.05■□□□□ 0
PRPF40A-202ENST00000410080 PPP1R15AO75807 674 aaPredicted RBP15.03■□□□□ -0
PRPF40A-202ENST00000410080 KDM2AQ9Y2K7 1162 aa15.03■□□□□ -0
PRPF40A-202ENST00000410080 WDR43Q15061 677 aaKnown RBP eCLIP15.03■□□□□ -0
PRPF40A-202ENST00000410080 CHIC2Q9UKJ5 165 aa15.02□□□□□ -0.01
PRPF40A-202ENST00000410080 NBR1Q14596 966 aa15□□□□□ -0.01
PRPF40A-202ENST00000410080 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.99□□□□□ -0.01
PRPF40A-202ENST00000410080 CSRNP3Q8WYN3 585 aa14.98□□□□□ -0.01
PRPF40A-202ENST00000410080 CLSTN1O94985 981 aa14.98□□□□□ -0.01
PRPF40A-202ENST00000410080 LMOD2Q6P5Q4 547 aa14.98□□□□□ -0.01
PRPF40A-202ENST00000410080 TONSLQ96HA7 1378 aa14.95□□□□□ -0.02
PRPF40A-202ENST00000410080 TMC1Q8TDI8 760 aa14.95□□□□□ -0.02
PRPF40A-202ENST00000410080 HNRNPUQ00839 825 aaKnown RBP eCLIP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms